Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 3.3e-98 361.7 178 100.0
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 3.5e-76 288.5 178 76.4
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 5.1e-75 284.6 178 78.7
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 1.5e-74 283.1 178 76.4
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 5.8e-71 271.2 174 74.7
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 9.9e-71 270.4 176 72.2
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 3.8e-70 268.5 176 72.2
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 1.4e-69 266.5 174 71.8
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 2.4e-69 265.8 176 71.0
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 3.2e-69 265.4 176 72.2
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 4.1e-69 265.0 176 71.0
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 9.2e-69 263.8 176 71.6
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 1.2e-68 263.5 176 71.6
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 1.2e-68 263.5 176 71.0
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 1.2e-68 263.5 176 71.0
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 2.1e-68 262.7 176 71.0
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 2.1e-68 262.7 176 71.0
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 2.1e-68 262.7 176 71.6
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 2.7e-68 262.3 176 71.0
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 3.5e-68 261.9 174 73.0
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 3.5e-68 261.9 176 71.0
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 4.6e-68 261.5 176 70.5
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 4.6e-68 261.5 175 70.9
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 7.8e-68 260.8 176 70.5
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 7.8e-68 260.8 176 70.5
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 7.8e-68 260.8 176 71.0
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 7.8e-68 260.8 176 69.9
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 7.8e-68 260.8 175 69.1
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 1.0e-67 260.4 176 70.5
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 1.0e-67 260.4 176 71.6
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 1.0e-67 260.4 176 70.5
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 1.3e-67 260.0 174 70.1
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 1.3e-67 260.0 176 71.6
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 1.7e-67 259.6 174 71.3
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 1.7e-67 259.6 176 71.0
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 3.0e-67 258.8 176 71.0
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 3.0e-67 258.8 176 71.0
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 3.9e-67 258.5 176 71.6
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 3.9e-67 258.5 176 69.3
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 5.1e-67 258.1 174 70.7
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 5.1e-67 258.1 176 68.2
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 6.6e-67 257.7 176 70.5
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 6.6e-67 257.7 175 69.7
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 8.6e-67 257.3 174 70.1
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 1.1e-66 256.9 176 70.5
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 1.1e-66 256.9 176 70.5
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 1.5e-66 256.5 176 69.3
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 1.5e-66 256.5 175 69.7
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 1.5e-66 256.5 176 68.8
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 1.5e-66 256.5 174 70.1
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 1.9e-66 256.1 176 69.3
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 1.9e-66 256.1 176 68.8
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 1.9e-66 256.1 174 69.5
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 1.9e-66 256.1 174 69.5
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 1.9e-66 256.1 176 67.6
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 2.5e-66 255.8 176 68.8
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 2.5e-66 255.8 175 70.9
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 2.5e-66 255.8 174 70.7
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 2.5e-66 255.8 176 67.6
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 3.3e-66 255.4 173 69.4
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 3.3e-66 255.4 174 69.5
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 4.3e-66 255.0 175 69.7
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 7.3e-66 254.2 174 69.5
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 9.6e-66 253.8 174 69.5
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 1.2e-65 253.4 176 68.2
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 1.6e-65 253.1 175 69.7
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 2.8e-65 252.3 175 69.7
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 3.6e-65 251.9 176 69.9
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.6e-65 251.9 176 69.9
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 4.7e-65 251.5 175 69.1
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 4.7e-65 251.5 176 69.3
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 6.2e-65 251.1 175 70.3
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 1.1e-64 250.4 174 69.5
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 1.4e-64 250.0 175 69.7
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 1.4e-64 250.0 175 69.7
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 1.8e-64 249.6 175 69.1
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 1.8e-64 249.6 174 69.5
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 1.8e-64 249.6 174 69.5
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 1.8e-64 249.6 174 69.5
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 1.8e-64 249.6 174 69.5
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.4e-64 249.2 176 69.3
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 2.4e-64 249.2 176 69.9
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 2.4e-64 249.2 176 68.8
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 3.1e-64 248.8 174 69.5
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 3.1e-64 248.8 173 69.4
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 4.0e-64 248.4 174 69.5
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 5.2e-64 248.1 175 68.0
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 5.2e-64 248.1 174 69.5
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 5.2e-64 248.1 174 69.0
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 1.2e-63 246.9 176 67.0
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 1.2e-63 246.9 172 68.0
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 1.2e-63 246.9 174 69.0
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 1.5e-63 246.5 182 67.0
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 2.0e-63 246.1 172 66.9
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 2.6e-63 245.7 172 67.4
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 9.9e-63 243.8 191 62.8
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 4.9e-62 241.5 175 65.7
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 8.4e-62 240.7 175 65.1
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.1e-61 240.4 175 65.1
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 1.2e-60 236.9 227 55.1
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 1.7e-59 233.0 167 68.9
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 1.1e-58 230.3 161 67.7
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 2.8e-57 225.7 160 70.0
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 1.4e-53 213.4 148 70.9
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 3.2e-53 212.2 153 66.7
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 3.9e-51 205.3 134 73.1
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 1.1e-50 203.8 147 69.4
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 3.3e-50 202.2 133 73.7
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 7.4e-50 201.1 134 70.9
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 3.4e-47 192.2 185 54.6
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 2.2e-46 189.5 136 68.4
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 2.4e-45 186.0 132 66.7
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 2.4e-45 186.0 132 66.7
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 5.5e-45 184.9 172 55.2
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 1.3e-43 180.3 128 68.0
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 3.9e-43 178.7 178 50.0
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 3.9e-43 178.7 129 67.4
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 1.5e-42 176.8 129 64.3
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 1.9e-42 176.4 129 65.1
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 3.3e-42 175.6 132 65.2
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 1.6e-41 173.3 130 66.2
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 2.0e-39 166.4 128 64.1
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 7.6e-39 164.5 131 62.6
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.3e-38 163.7 163 52.8
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 2.9e-38 162.5 130 60.8
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 1.0e-35 154.1 129 61.2
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 4.3e-34 148.7 130 56.2
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 2.1e-28 129.8 133 51.9
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 1.0e-27 127.5 194 36.1
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.1e-27 125.2 89 66.3
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.1e-27 125.2 93 65.6
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 1.1e-26 124.0 90 65.6
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 3.3e-26 122.5 87 65.5
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.8e-25 118.6 108 55.6
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.1e-24 117.5 92 62.0
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.4e-24 117.1 82 69.5
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.4e-24 116.3 106 56.6
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.1e-24 115.9 93 63.4
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.3e-24 115.2 87 65.5
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 1.7e-22 110.2 89 62.9
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 5.5e-21 105.1 75 65.3
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 5.5e-21 105.1 82 62.2
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 2.3e-19 99.8 101 49.5
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.3e-19 99.8 76 64.5
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 1.7e-17 93.6 69 62.3
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.4e-13 80.5 90 48.9
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 5.2e-11 72.0 59 61.0
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 9.1e-08 61.2 39 64.1


User provided reference genes

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