Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0548 Marchantia polymorpha HOM05D006998 ORTHO05D008733 1.7e-64 249.2 128 100.0
Pp3c11_10230 Physcomitrium patens HOM05D006998 ORTHO05D008733 3.5e-17 92.0 105 45.7
AagrBONN_evm.TU.Sc2ySwM_362.2114 Anthoceros agrestis HOM05D006998 ORTHO05D008733 4.2e-15 85.1 98 45.9
CBR_g38954 Chara braunii HOM05D006723 ORTHO05D008194 6.1e-14 81.3 97 47.4
Thecc.04G025300 Theobroma cacao HOM05D006998 ORTHO05D008733 8.8e-13 77.4 64 60.9
Gohir.A07G225400 Gossypium hirsutum HOM05D006998 ORTHO05D008733 3.4e-12 75.5 64 62.5
Gohir.D07G232600 Gossypium hirsutum HOM05D006998 ORTHO05D008733 3.4e-12 75.5 64 62.5
Gorai.001G267900 Gossypium raimondii HOM05D006998 ORTHO05D008733 3.4e-12 75.5 64 62.5
Cpa.g.sc130.46 Carica papaya HOM05D006998 ORTHO05D008733 4.4e-12 75.1 64 59.4
THA.LOC104823962 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 5.7e-12 74.7 66 57.6
THA.LOC104823963 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 5.7e-12 74.7 66 57.6
BcaC06g31012 Brassica carinata HOM05D006998 ORTHO05D008733 9.8e-12 73.9 66 59.1
Duzib147G0953 Durio zibethinus HOM05D006998 ORTHO05D008733 9.8e-12 73.9 64 60.9
A02p35400 Brassica napus HOM05D006998 ORTHO05D008733 1.3e-11 73.6 66 59.1
C02p54110 Brassica napus HOM05D006998 ORTHO05D008733 1.3e-11 73.6 66 59.1
BolC2t11473H Brassica oleracea HOM05D006998 ORTHO05D008733 1.3e-11 73.6 66 59.1
Sp2g16530 Schrenkiella parvula HOM05D006998 ORTHO05D008733 1.3e-11 73.6 66 59.1
A06p41260 Brassica napus HOM05D006998 ORTHO05D008733 1.7e-11 73.2 66 59.1
BraA06t27050Z Brassica rapa HOM05D006998 ORTHO05D008733 1.7e-11 73.2 66 59.1
BraA02t08541Z Brassica rapa HOM05D006998 ORTHO05D008733 2.2e-11 72.8 66 59.1
Aa31LG2G5380 Aethionema arabicum HOM05D006998 ORTHO05D008733 2.8e-11 72.4 66 57.6
AL5G16660 Arabidopsis lyrata HOM05D006998 ORTHO05D008733 2.8e-11 72.4 66 57.6
COL.COLO4_29269 Corchorus olitorius HOM05D006998 ORTHO05D008733 2.8e-11 72.4 64 59.4
Zm00001eb144320 Zea mays HOM05D006998 ORTHO05D008733 3.7e-11 72.0 85 47.1
Potri.001G336600 Populus trichocarpa HOM05D006998 ORTHO05D008733 4.8e-11 71.6 64 56.2
TWI56G1021 Tripterygium wilfordii HOM05D006998 ORTHO05D008733 4.8e-11 71.6 64 56.2
Carub.0005s0564 Capsella rubella HOM05D006998 ORTHO05D008733 6.3e-11 71.2 66 56.1
Ciclev10017134m.g Citrus clementina HOM05D006998 ORTHO05D008733 6.3e-11 71.2 64 54.7
SHI03852 Sapria himalayana HOM05D006998 ORTHO05D008733 6.3e-11 71.2 62 56.5
C07p36390 Brassica napus HOM05D006998 ORTHO05D008733 8.3e-11 70.9 66 57.6
Atru.chr6.2476 Acer truncatum HOM05D006998 ORTHO05D008733 1.1e-10 70.5 64 53.1
Manes.15G155800 Manihot esculenta HOM05D006998 ORTHO05D008733 1.1e-10 70.5 88 46.6
Sabra16G0217400 Salix brachista HOM05D006998 ORTHO05D008733 1.1e-10 70.5 64 54.7
AT3G27340 Arabidopsis thaliana HOM05D006998 ORTHO05D008733 1.4e-10 70.1 63 57.1
CsaV3_3G027380 Cucumis sativus L. HOM05D006998 ORTHO05D008733 1.8e-10 69.7 73 52.1
Ah.13g075640 Amaranthus hybridus HOM05D000240 ORTHO05D001153 2.4e-10 69.3 64 56.2
EL10Ac3g06878 Beta vulgaris HOM05D006998 ORTHO05D008733 2.4e-10 69.3 64 57.8
MD09G1018100 Malus domestica HOM05D006998 ORTHO05D008733 2.4e-10 69.3 64 54.7
Aqoxy1G01464 Aquilegia oxysepala HOM05D006998 ORTHO05D008733 3.1e-10 68.9 64 56.2
Thhalv10005152m.g Eutrema salsugineum HOM05D006998 ORTHO05D008733 3.1e-10 68.9 62 58.1
TAR371G1002 Trochodendron aralioides HOM05D006998 ORTHO05D008733 3.1e-10 68.9 83 51.8
vmacro18311 Vaccinium macrocarpon HOM05D006998 ORTHO05D008733 3.1e-10 68.9 63 54.0
CDE07G0016 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 4.1e-10 68.6 94 42.6
COL.COLO4_29265 Corchorus olitorius HOM05D006998 ORTHO05D008733 4.1e-10 68.6 61 59.0
Sed0003364 Sechium edule HOM05D006998 ORTHO05D008733 4.1e-10 68.6 91 42.9
Ca_14748_v3 Cicer arietinum L. HOM05D006998 ORTHO05D008733 5.4e-10 68.2 61 55.7
Medtr3g052740 Medicago truncatula HOM05D006998 ORTHO05D008733 5.4e-10 68.2 61 55.7
PSO782G5351 Papaver somniferum HOM05D006998 ORTHO05D008733 5.4e-10 68.2 81 49.4
TPR.G39742 Trifolium pratense HOM05D006998 ORTHO05D008733 5.4e-10 68.2 61 55.7
Lalb_Chr20g0116091 Lupinus albus HOM05D006998 ORTHO05D008733 7.0e-10 67.8 61 54.1
MBI06_g43854_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 7.0e-10 67.8 65 53.8
Eucgr.I01699 Eucalyptus grandis HOM05D006998 ORTHO05D008733 9.1e-10 67.4 64 51.6
QL02p001451 Quercus lobata HOM05D006998 ORTHO05D008733 9.1e-10 67.4 64 56.2
HPP92_007225 Vanilla planifolia HOM05D006998 ORTHO05D008733 9.1e-10 67.4 88 42.0
GSVIVG01003966001 Vitis vinifera HOM05D006998 ORTHO05D008733 9.1e-10 67.4 64 53.1
BolC7t44158H Brassica oleracea HOM05D006998 ORTHO05D008733 1.2e-09 67.0 66 54.5
CARHR148660 Cardamine hirsuta HOM05D006998 ORTHO05D008733 1.2e-09 67.0 62 54.8
CDE04G0536 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 1.2e-09 67.0 64 54.7
Os02g0197800 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 1.2e-09 67.0 102 42.2
arahy.Tifrunner.gnm1.ann1.W3WD4H Arachis hypogaea HOM05D006998 ORTHO05D008733 1.6e-09 66.6 61 54.1
Psat5g174840 Pisum sativum HOM05D006998 ORTHO05D008733 1.6e-09 66.6 60 55.0
CANSAT64G0830 Cannabis sativa HOM05D006998 ORTHO05D008733 2.0e-09 66.2 64 53.1
Glyma.08G318800 Glycine max HOM05D006998 ORTHO05D008733 2.0e-09 66.2 61 54.1
SGA_v2.0_scaffold135G34933 Striga asiatica HOM05D006998 ORTHO05D008733 2.0e-09 66.2 64 51.6
ClCG05G013170 Citrullus lanatus HOM05D006998 ORTHO05D008733 2.7e-09 65.9 62 54.8
MBI06_g05240_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 2.7e-09 65.9 94 45.7
Os01g0904300 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 2.7e-09 65.9 62 56.5
Peaxi162Scf00080g01715 Petunia axillaris HOM05D006998 ORTHO05D008733 2.7e-09 65.9 63 49.2
MSTRG.3117 Avicennia marina HOM05D006998 ORTHO05D008733 3.5e-09 65.5 64 50.0
AUR62015328 Chenopodium quinoa HOM05D006998 ORTHO05D008733 3.5e-09 65.5 61 57.4
Actinidia18425 Actinidia chinensis HOM05D006998 ORTHO05D008733 4.5e-09 65.1 81 46.9
CiPaw.13G047700 Carya illinoinensis HOM05D006998 ORTHO05D008733 4.5e-09 65.1 64 53.1
MELO3C014841.2 Cucumis melo HOM05D006998 ORTHO05D008733 4.5e-09 65.1 64 51.6
FAN14G5586 Fragaria x ananassa HOM05D006998 ORTHO05D008733 4.5e-09 65.1 64 54.7
SMO364G0335 Selaginella moellendorffii HOM05D006998 ORTHO05D008733 4.5e-09 65.1 61 52.5
Migut.H00050 Erythranthe guttata HOM05D006998 ORTHO05D008733 5.9e-09 64.7 62 51.6
TPR.G33763 Trifolium pratense HOM05D006998 ORTHO05D008733 5.9e-09 64.7 106 42.5
Solyc02g093730.4 Solanum lycopersicum HOM05D006998 ORTHO05D008733 7.7e-09 64.3 64 50.0
ECA232G0345 Erigeron canadensis HOM05D006998 ORTHO05D008733 1.0e-08 63.9 81 46.9
Phvul.006G045900 Phaseolus vulgaris HOM05D006998 ORTHO05D008733 1.0e-08 63.9 61 54.1
RcHm_v2.0_Chr2g0174071 Rosa chinensis HOM05D006998 ORTHO05D008733 1.0e-08 63.9 64 53.1
Sc03g0006900 Simmondsia chinensis HOM05D006998 ORTHO05D008733 1.0e-08 63.9 107 43.0
Sc03g0007000 Simmondsia chinensis HOM05D006998 ORTHO05D008733 1.0e-08 63.9 107 43.0
Nitab4.5_0000040g0550 Nicotiana tabacum HOM05D006998 ORTHO05D008733 1.3e-08 63.5 63 49.2
Nitab4.5_0005414g0020 Nicotiana tabacum HOM05D006998 ORTHO05D008733 1.3e-08 63.5 62 50.0
VMungo0540G0081 Vigna mungo HOM05D006998 ORTHO05D008733 1.3e-08 63.5 61 52.5
arahy.Tifrunner.gnm1.ann1.24IP75 Arachis hypogaea HOM05D006998 ORTHO05D008733 1.7e-08 63.2 60 53.3
Haze_03392 Corylus avellana HOM05D006998 ORTHO05D008733 1.7e-08 63.2 60 53.3
Haze_03396 Corylus avellana HOM05D006998 ORTHO05D008733 1.7e-08 63.2 60 53.3
FAN05G2331 Fragaria x ananassa HOM05D006998 ORTHO05D008733 1.7e-08 63.2 74 50.0
unitig_744.g24361 Utricularia gibba HOM05D002252 ORTHO05D002451 1.7e-08 63.2 59 52.5
CAN.G473.52 Capsicum annuum HOM05D006998 ORTHO05D008733 2.2e-08 62.8 62 50.0
FAN02G1980 Fragaria x ananassa HOM05D006998 ORTHO05D008733 2.9e-08 62.4 61 54.1
PGR142G0400 Punica granatum HOM05D006998 ORTHO05D008733 2.9e-08 62.4 60 48.3
HanXRQChr09g0255661 Helianthus annuus HOM05D006998 ORTHO05D008733 3.8e-08 62.0 81 45.7
Lj6g0003593 Lotus japonicus HOM05D006998 ORTHO05D008733 5.0e-08 61.6 61 52.5
SalBow2G0885 Salvia bowleyana HOM05D006998 ORTHO05D008733 5.0e-08 61.6 70 47.1
SalBow2G2409 Salvia bowleyana HOM05D006998 ORTHO05D008733 6.5e-08 61.2 64 50.0
PGSC0003DMG400012647 Solanum tuberosum HOM05D006998 ORTHO05D008733 6.5e-08 61.2 64 48.4
Cfa010438 Carpinus fangiana HOM05D006998 ORTHO05D008733 8.5e-08 60.8 60 51.7
Lsat_1_v5_gn_4_184841 Lactuca sativa HOM05D006998 ORTHO05D008733 1.1e-07 60.5 62 50.0
Nn5g27086 Nelumbo nucifera HOM05D006998 ORTHO05D008733 3.2e-07 58.9 59 50.8
ATR1089G022 Amborella trichopoda HOM05D006998 ORTHO05D008733 4.2e-07 58.5 62 48.4
Cc07_g00360 Coffea canephora HOM05D006998 ORTHO05D008733 5.5e-07 58.2 64 48.4
Pp3c11_9830 Physcomitrium patens HOM05D006998 ORTHO05D008733 2.7e-06 55.8 53 49.1
PSO063G6009 Papaver somniferum HOM05D006998 ORTHO05D008733 6.1e-06 54.7 114 36.0


User provided reference genes

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