Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 0.0e+00 1604.0 831 100.0
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 2.3e-146 523.9 862 39.0
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 3.8e-125 453.4 826 36.2
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 6.8e-106 389.4 845 33.0
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 5.8e-105 386.3 839 32.3
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 1.3e-104 385.2 839 33.1
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 1.7e-104 384.8 826 33.8
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 3.2e-103 380.6 840 31.0
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 5.4e-103 379.8 826 33.8
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 1.3e-101 375.2 814 32.3
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 3.0e-101 374.0 839 33.0
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 3.9e-101 373.6 841 32.8
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 6.6e-101 372.9 845 32.3
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 2.5e-100 370.9 843 31.8
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 1.2e-99 368.6 841 30.9
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 3.6e-99 367.1 842 31.0
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 8.1e-99 365.9 839 32.7
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 1.1e-98 365.5 842 30.6
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 2.6e-97 360.9 843 32.1
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 9.9e-97 359.0 847 32.0
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 1.3e-96 358.6 861 32.6
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 1.3e-96 358.6 840 30.7
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 8.3e-96 355.9 837 32.0
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 1.4e-95 355.1 853 32.0
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 2.4e-95 354.4 832 30.9
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 5.4e-95 353.2 841 30.3
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 2.1e-94 351.3 842 31.1
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 2.7e-94 350.9 702 32.3
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 7.8e-94 349.4 840 29.8
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 1.0e-93 349.0 700 32.4
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 1.3e-93 348.6 838 30.4
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 1.1e-92 345.5 839 31.2
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 1.1e-92 345.5 740 32.3
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 1.5e-92 345.1 842 30.4
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 2.5e-92 344.4 837 30.5
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 3.3e-92 344.0 834 30.7
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 4.3e-92 343.6 834 31.1
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 1.2e-91 342.0 814 31.3
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 1.6e-91 341.7 717 31.5
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 1.6e-91 341.7 815 30.9
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 3.6e-91 340.5 844 29.6
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 8.1e-91 339.3 815 30.7
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 8.1e-91 339.3 847 30.6
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 2.4e-90 337.8 734 32.6
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 3.1e-90 337.4 842 29.8
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 3.1e-90 337.4 698 32.7
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 4.0e-90 337.0 842 30.2
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 6.8e-90 336.3 828 29.3
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 8.9e-90 335.9 704 32.1
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 1.2e-89 335.5 748 31.3
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 3.4e-89 334.0 834 30.2
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 4.4e-89 333.6 852 29.2
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 5.8e-89 333.2 701 32.4
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 2.2e-88 331.3 840 31.4
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 4.9e-88 330.1 845 30.2
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 6.4e-88 329.7 840 29.5
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 6.4e-88 329.7 839 29.7
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 8.4e-88 329.3 844 31.4
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 8.4e-88 329.3 821 30.9
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 1.4e-87 328.6 838 31.5
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 1.6e-86 325.1 838 30.0
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 1.5e-84 318.5 839 31.0
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 2.5e-84 317.8 844 28.9
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 9.6e-84 315.8 848 29.2
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 1.2e-83 315.5 697 31.4
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 1.6e-83 315.1 634 33.4
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 1.6e-83 315.1 843 29.5
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 1.1e-82 312.4 840 29.5
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 1.4e-82 312.0 694 31.7
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 1.4e-82 312.0 698 30.8
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 1.8e-82 311.6 836 31.2
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 1.5e-81 308.5 627 32.9
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 4.4e-81 307.0 840 29.3
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 7.6e-81 306.2 672 32.7
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 2.1e-78 298.1 830 29.5
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 7.8e-78 296.2 735 30.9
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 6.6e-77 293.1 841 28.2
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 2.5e-76 291.2 841 28.8
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 2.8e-75 287.7 633 32.1
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 4.8e-75 287.0 837 28.7
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 3.1e-74 284.3 379 41.4
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 4.2e-71 273.9 591 32.3
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 2.5e-68 264.6 580 31.2
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 6.2e-67 260.0 880 27.5
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 5.3e-66 256.9 568 33.3
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 6.9e-66 256.5 635 30.2
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 1.2e-65 255.8 624 28.8
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 2.2e-64 251.5 473 35.1
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 8.7e-61 239.6 744 27.8
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 3.3e-60 237.7 565 31.3
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 1.8e-58 231.9 573 29.8
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 3.1e-58 231.1 532 28.9
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 2.6e-57 228.0 639 27.5
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 4.5e-57 227.3 577 29.5
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 2.5e-55 221.5 402 32.3
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 2.1e-54 218.4 565 30.1
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 3.3e-52 211.1 388 34.5
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 2.2e-48 198.4 588 27.9
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 1.9e-47 195.3 581 29.6
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 3.0e-45 188.0 347 35.4
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 6.9e-42 176.8 687 23.9
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 1.1e-31 142.9 165 47.9
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 2.1e-30 138.7 167 46.1
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 8.2e-27 126.7 128 44.5
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.5e-23 115.9 334 30.2
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 2.5e-23 115.2 259 36.3
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 1.6e-22 112.5 227 33.5
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 3.6e-22 111.3 123 43.1
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 3.6e-22 111.3 348 27.9
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 4.7e-14 84.3 234 29.5
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 8.8e-13 80.1 253 26.5
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 4.4e-12 77.8 235 30.2
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 6.3e-11 73.9 92 43.5
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.2e-09 69.7 198 27.8
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 1.2e-06 59.7 145 29.0
DCAR_010374 Daucus carota HOM05D006558 ORTHO05D008424 2.1e-06 58.9 209 23.9


User provided reference genes

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