Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 0.0e+00 4606.6 2329 100.0
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 0.0e+00 1183.7 2327 35.1
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 1.8e-196 691.8 2045 28.6
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 9.9e-187 659.4 2036 27.9
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 2.9e-186 657.9 2039 28.2
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 7.1e-185 653.3 2042 27.9
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 1.2e-184 652.5 2045 28.5
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 1.5e-182 645.6 1721 29.8
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 3.3e-182 644.4 1700 30.0
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 1.4e-180 639.0 1669 30.9
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 4.0e-180 637.5 2116 28.5
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 1.3e-178 632.5 1706 30.3
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 2.9e-178 631.3 1335 35.0
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 2.9e-178 631.3 2129 27.1
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 3.8e-178 630.9 1699 30.5
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 1.9e-177 628.6 1690 31.1
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 4.2e-177 627.5 1699 30.4
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.2e-176 625.9 1641 29.6
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.2e-176 625.9 1698 30.2
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 7.9e-176 623.2 1700 30.1
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 5.1e-175 620.5 2065 28.0
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 1.1e-174 619.4 2074 27.3
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 1.1e-174 619.4 2082 27.7
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 1.5e-174 619.0 2062 28.1
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 1.5e-174 619.0 2028 27.8
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 5.6e-174 617.1 1712 30.5
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 9.6e-174 616.3 2068 27.6
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.3e-173 615.9 2045 27.9
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.3e-173 615.9 1712 30.5
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 4.8e-173 614.0 1706 30.1
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 1.8e-172 612.1 1689 29.7
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 2.4e-172 611.7 2099 27.4
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 3.1e-172 611.3 2055 27.3
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 6.9e-172 610.1 1706 29.8
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 1.5e-171 609.0 1706 30.4
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 3.4e-171 607.8 1706 30.0
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 3.4e-171 607.8 2087 27.4
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 5.8e-171 607.1 1681 29.8
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 3.8e-170 604.4 1680 29.6
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 4.9e-170 604.0 1672 29.5
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 8.4e-170 603.2 1698 28.7
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 1.1e-169 602.8 2017 27.0
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 1.4e-169 602.4 1660 29.7
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 4.2e-169 600.9 1703 29.5
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 9.3e-169 599.7 2069 28.3
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 9.3e-169 599.7 1695 29.6
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 6.0e-168 597.0 1702 29.6
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 3.9e-167 594.3 1688 29.3
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 4.3e-166 590.9 1677 29.0
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 7.4e-166 590.1 1692 29.3
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 7.4e-166 590.1 1700 29.5
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 7.4e-166 590.1 1703 29.5
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 1.6e-165 589.0 2050 27.2
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 2.1e-165 588.6 1662 29.2
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 3.7e-165 587.8 1711 29.6
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 6.2e-165 587.0 2162 26.9
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 8.1e-165 586.6 1662 29.2
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 1.1e-164 586.3 1713 29.2
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 1.8e-164 585.5 1673 29.3
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 1.8e-164 585.5 1676 29.2
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 2.4e-164 585.1 2042 27.2
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 5.3e-164 583.9 2055 27.3
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 5.3e-164 583.9 1718 29.4
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 1.5e-163 582.4 1672 29.3
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 4.5e-163 580.9 2051 27.1
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 6.5e-162 577.0 1695 28.9
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 2.5e-161 575.1 2035 27.7
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 5.5e-161 573.9 1687 28.2
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 5.5e-161 573.9 1686 28.6
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 1.6e-160 572.4 1675 28.7
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 6.7e-159 567.0 1685 28.5
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 5.7e-158 563.9 1935 27.1
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 7.4e-158 563.5 3032 24.3
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 6.2e-157 560.5 1705 28.4
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 2.4e-156 558.5 1676 28.9
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 2.4e-156 558.5 2197 26.4
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 7.6e-155 553.5 1699 28.7
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 8.4e-154 550.1 1695 27.1
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.3e-151 542.7 1480 30.3
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 2.5e-145 521.9 1558 29.5
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 3.2e-145 521.5 2033 25.9
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 4.2e-145 521.2 2201 25.9
MapolyY_B0006 Marchantia polymorpha HOM05D004435 ORTHO05D005103 2.8e-141 508.4 608 51.3
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 2.8e-141 508.4 1698 26.9
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 1.2e-136 493.0 1457 28.9
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 5.7e-134 484.2 1481 29.5
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 1.3e-130 473.0 1475 28.9
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 2.0e-126 459.1 1498 28.2
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 2.8e-125 455.3 1545 27.1
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 6.3e-125 454.1 1659 25.9
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 4.0e-119 434.9 1741 26.1
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 1.1e-105 390.2 913 32.2
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 3.0e-103 382.1 882 31.7
SEGI_19519 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 5.7e-102 377.9 977 29.7
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 2.6e-94 352.4 757 32.1
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.2e-86 327.0 620 35.6
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 4.4e-86 325.1 1145 27.3
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 7.8e-83 314.3 431 42.0
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 7.8e-83 314.3 1280 25.7
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 1.3e-82 313.5 1306 24.9
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 8.1e-80 304.3 594 34.7
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 3.1e-79 302.4 422 42.2
CARHR141910 Cardamine hirsuta HOM05D004435 ORTHO05D005103 7.6e-78 297.7 948 26.8
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 9.9e-78 297.4 456 39.7
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 8.4e-77 294.3 458 38.6
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 3.9e-66 258.8 299 47.2
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 4.8e-64 251.9 385 39.0
AagrBONN_evm.TU.Sc2ySwM_228.2860 Anthoceros agrestis HOM05D004435 ORTHO05D005103 1.9e-60 240.0 269 43.9
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.9e-57 229.9 235 50.2
TPR.G20227 Trifolium pratense HOM05D004435 ORTHO05D005103 4.5e-54 218.8 442 32.6
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 5.8e-54 218.4 400 36.2
Hma1.2p1_0101F.1_g049270 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 7.2e-36 158.3 701 25.2
Aa31LG1G27950 Aethionema arabicum HOM05D004435 ORTHO05D005103 1.3e-32 147.5 653 25.0
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 3.4e-30 139.4 400 29.5
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 5.9e-30 138.7 252 32.1
BcaC02g12668 Brassica carinata HOM05D004435 ORTHO05D005103 1.7e-24 120.6 188 36.7
Aa31LG1G27960 Aethionema arabicum HOM05D004435 ORTHO05D005103 6.3e-24 118.6 193 34.2
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 1.8e-23 117.1 140 42.1
Glyma.08G280100 Glycine max HOM05D004435 ORTHO05D005103 7.9e-19 101.7 88 53.4
Os01g0552000 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 1.5e-17 97.4 296 28.7
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 2.8e-16 93.2 172 37.2
SEGI_36456 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.9e-12 80.5 122 36.1
FAN10G3206 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.4e-07 64.3 99 40.4
Hma1.2p1_0101F.1_g049260 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 5.9e-06 58.9 83 39.8


User provided reference genes

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