Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 5.6e-231 803.9 403 100.0
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 6.7e-192 674.1 402 82.1
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.5e-191 672.9 402 81.8
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 3.7e-182 641.7 401 75.3
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 1.1e-181 640.2 401 76.8
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 7.0e-181 637.5 401 75.6
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 2.0e-180 636.0 403 75.7
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 2.0e-180 636.0 401 76.1
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 2.6e-180 635.6 401 75.1
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 4.5e-180 634.8 401 75.3
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 5.9e-180 634.4 401 75.1
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 5.9e-180 634.4 401 74.3
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 5.9e-180 634.4 401 74.8
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 5.9e-180 634.4 401 74.8
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 7.7e-180 634.0 401 74.8
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 7.7e-180 634.0 401 75.6
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 1.3e-179 633.3 403 75.4
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 2.2e-179 632.5 410 74.6
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 2.9e-179 632.1 401 74.8
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 3.8e-179 631.7 401 74.8
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 5.0e-179 631.3 401 74.8
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 5.0e-179 631.3 401 74.8
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 6.5e-179 630.9 401 74.6
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 8.5e-179 630.6 416 73.6
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.1e-178 630.2 401 74.1
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 1.1e-178 630.2 401 76.6
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 1.1e-178 630.2 401 74.8
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.5e-178 629.8 401 74.3
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.5e-178 629.8 401 74.6
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 1.5e-178 629.8 401 74.8
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.9e-178 629.4 401 73.3
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 1.9e-178 629.4 401 73.8
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 2.5e-178 629.0 401 74.6
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 2.5e-178 629.0 401 74.3
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 4.2e-178 628.2 401 74.1
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 4.2e-178 628.2 401 74.1
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 4.2e-178 628.2 401 73.8
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 5.5e-178 627.9 401 74.1
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 5.5e-178 627.9 401 74.1
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 9.4e-178 627.1 401 74.8
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 9.4e-178 627.1 401 74.8
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 9.4e-178 627.1 401 74.8
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 9.4e-178 627.1 401 74.8
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 9.4e-178 627.1 401 74.8
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 9.4e-178 627.1 401 74.3
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 9.4e-178 627.1 401 74.1
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 9.4e-178 627.1 401 73.8
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 1.2e-177 626.7 401 73.8
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 1.6e-177 626.3 401 74.6
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.6e-177 626.3 401 73.8
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.6e-177 626.3 401 73.8
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 1.6e-177 626.3 401 73.8
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.1e-177 625.9 401 74.1
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 2.1e-177 625.9 401 73.8
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 2.1e-177 625.9 401 73.8
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 2.1e-177 625.9 401 73.1
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 2.1e-177 625.9 401 74.3
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 2.1e-177 625.9 401 73.3
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 2.7e-177 625.5 401 74.3
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.7e-177 625.5 397 74.6
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 2.7e-177 625.5 401 73.6
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 2.7e-177 625.5 400 74.0
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 3.6e-177 625.2 401 73.8
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 3.6e-177 625.2 401 73.3
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 4.7e-177 624.8 401 73.6
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 4.7e-177 624.8 401 74.1
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 6.1e-177 624.4 401 74.3
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 6.1e-177 624.4 401 73.3
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 6.1e-177 624.4 401 73.6
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 6.1e-177 624.4 401 74.8
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 1.0e-176 623.6 401 74.3
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 1.0e-176 623.6 401 73.6
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.0e-176 623.6 401 73.3
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 1.8e-176 622.9 401 74.1
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 1.8e-176 622.9 401 74.1
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 1.8e-176 622.9 401 73.3
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 1.8e-176 622.9 401 73.6
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 1.8e-176 622.9 401 73.6
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 2.3e-176 622.5 401 73.6
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 2.3e-176 622.5 401 73.8
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 2.3e-176 622.5 401 74.1
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 3.0e-176 622.1 401 72.6
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 3.0e-176 622.1 401 73.1
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 4.0e-176 621.7 401 72.8
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 4.0e-176 621.7 401 72.8
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 5.2e-176 621.3 401 73.8
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 5.2e-176 621.3 401 73.8
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 5.2e-176 621.3 401 73.8
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 5.2e-176 621.3 401 73.1
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 5.2e-176 621.3 401 73.1
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 5.2e-176 621.3 401 72.8
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 5.2e-176 621.3 401 73.6
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 5.2e-176 621.3 401 73.3
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 8.8e-176 620.5 401 73.1
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 1.5e-175 619.8 401 73.1
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 2.0e-175 619.4 401 73.6
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 3.3e-175 618.6 401 73.1
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 3.3e-175 618.6 401 73.1
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 3.3e-175 618.6 401 72.8
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 3.3e-175 618.6 401 73.3
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 3.3e-175 618.6 401 73.1
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 3.3e-175 618.6 401 72.8
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 5.7e-175 617.8 401 73.3
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 5.7e-175 617.8 401 72.6
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 9.7e-175 617.1 397 72.5
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 9.7e-175 617.1 401 72.1
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 2.8e-174 615.5 437 68.9
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 3.7e-174 615.1 401 72.3
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 1.1e-173 613.6 401 71.8
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 2.4e-173 612.5 401 71.8
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 4.1e-173 611.7 428 68.9
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 4.1e-173 611.7 401 72.1
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 5.3e-173 611.3 401 71.6
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 7.0e-173 610.9 401 71.1
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 7.0e-173 610.9 401 71.8
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 1.6e-172 609.8 401 72.6
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 1.6e-172 609.8 411 70.8
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 3.5e-172 608.6 399 71.2
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 4.5e-172 608.2 411 70.6
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 8.5e-171 604.0 404 72.0
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 1.9e-170 602.8 418 70.1
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.4e-168 596.7 396 71.0
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 1.5e-167 593.2 401 71.6
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 3.4e-167 592.0 401 70.8
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 4.8e-166 588.2 440 66.4
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.1e-165 587.0 399 70.7
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 3.5e-164 582.0 401 68.1
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 2.9e-163 578.9 401 69.1
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 5.0e-163 578.2 395 69.1
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 5.0e-163 578.2 401 67.3
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 9.5e-162 573.9 401 68.3
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 2.8e-161 572.4 400 67.2
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 6.1e-161 571.2 356 75.0
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 2.3e-160 569.3 401 68.6
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 4.0e-160 568.5 375 70.9
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 7.7e-156 554.3 401 66.6
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 2.8e-153 545.8 360 71.9
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 2.2e-150 536.2 401 67.8
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 1.3e-147 526.9 340 73.8
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.1e-146 523.9 334 74.3
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 2.3e-139 499.6 401 62.6
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 1.8e-128 463.4 288 74.0
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 2.3e-128 463.0 394 57.1
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 3.5e-124 449.1 399 56.4
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 8.9e-120 434.5 402 57.2
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 9.3e-117 424.5 418 54.8
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 1.7e-115 420.2 401 54.1
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 2.9e-110 402.9 259 75.3
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 2.8e-97 359.8 275 63.6
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 1.3e-89 334.3 229 69.0
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.3e-86 324.3 301 58.1
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 9.7e-82 308.1 218 66.5
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 1.3e-81 307.8 218 67.0
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 2.2e-81 307.0 218 66.5
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 8.8e-67 258.5 166 70.5
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.2e-60 238.0 159 73.0
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 7.0e-40 169.1 115 71.3
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 7.5e-34 149.1 348 29.6
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 3.5e-31 140.2 351 26.8
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 9.2e-24 115.5 71 73.2
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 6.2e-12 76.3 47 70.2
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 2.0e-10 71.2 44 70.5
Pp3s34_610 Physcomitrium patens HOM05D000068 ORTHO05D011688 4.4e-10 70.1 300 24.3
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-09 68.6 318 22.0
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 1.2e-07 62.0 64 51.6


User provided reference genes

Program Settings