Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 9.6e-162 573.5 312 100.0
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 2.1e-36 157.1 321 35.8
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 3.6e-36 156.4 326 35.3
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 2.4e-35 153.7 321 34.3
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 5.3e-35 152.5 319 33.5
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 9.0e-35 151.8 309 33.3
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 1.2e-34 151.4 295 35.3
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 1.5e-34 151.0 280 34.3
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 1.5e-34 151.0 322 32.6
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 2.0e-34 150.6 315 34.6
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 2.6e-34 150.2 318 34.3
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 2.6e-34 150.2 321 34.6
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.4e-34 149.8 303 34.0
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 9.9e-34 148.3 316 35.1
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 2.9e-33 146.7 318 35.2
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 4.9e-33 146.0 318 33.0
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 6.4e-33 145.6 306 33.7
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 6.4e-33 145.6 313 34.8
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 8.4e-33 145.2 322 33.5
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 8.4e-33 145.2 298 33.6
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 8.4e-33 145.2 321 34.0
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 1.1e-32 144.8 288 36.5
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 1.9e-32 144.1 301 34.6
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 1.9e-32 144.1 301 34.6
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 1.9e-32 144.1 301 34.6
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.9e-32 144.1 315 33.3
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.9e-32 144.1 318 33.3
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 2.4e-32 143.7 313 33.9
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 3.2e-32 143.3 316 33.5
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 4.2e-32 142.9 317 32.2
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 5.4e-32 142.5 318 34.0
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 7.1e-32 142.1 301 33.6
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 7.1e-32 142.1 311 33.4
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 7.1e-32 142.1 293 33.8
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 9.3e-32 141.7 320 32.8
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 1.2e-31 141.4 293 33.4
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 1.6e-31 141.0 319 33.5
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 2.1e-31 140.6 312 33.3
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 2.1e-31 140.6 321 33.3
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 2.1e-31 140.6 318 34.3
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.1e-31 140.6 317 34.1
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 2.7e-31 140.2 315 33.7
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 2.7e-31 140.2 316 35.8
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 7.9e-31 138.7 300 33.0
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 7.9e-31 138.7 300 33.0
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 7.9e-31 138.7 317 32.8
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 1.0e-30 138.3 320 32.2
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.3e-30 137.9 319 33.2
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 1.3e-30 137.9 324 32.1
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 1.3e-30 137.9 309 32.0
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 1.3e-30 137.9 246 35.8
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.8e-30 137.5 316 32.3
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 1.8e-30 137.5 323 33.7
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 1.8e-30 137.5 297 31.6
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 3.0e-30 136.7 322 32.0
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 3.0e-30 136.7 322 32.0
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 3.0e-30 136.7 322 32.0
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 3.9e-30 136.3 315 33.3
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 6.7e-30 135.6 291 31.3
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 6.7e-30 135.6 324 32.1
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 8.7e-30 135.2 323 31.3
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 8.7e-30 135.2 312 33.3
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 1.5e-29 134.4 322 32.3
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 1.5e-29 134.4 322 32.3
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.9e-29 134.0 315 33.3
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 2.5e-29 133.7 324 29.0
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 2.5e-29 133.7 312 32.4
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 3.3e-29 133.3 317 32.5
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 3.3e-29 133.3 316 31.6
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 3.3e-29 133.3 323 32.5
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 4.3e-29 132.9 323 31.9
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 4.3e-29 132.9 322 31.7
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 4.3e-29 132.9 303 31.4
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 5.6e-29 132.5 303 31.4
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 5.6e-29 132.5 308 32.1
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 9.6e-29 131.7 321 32.1
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.3e-28 131.3 323 31.9
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 1.6e-28 131.0 308 31.5
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 2.1e-28 130.6 314 30.6
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 2.8e-28 130.2 317 31.5
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 3.7e-28 129.8 245 33.9
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 3.7e-28 129.8 245 33.9
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 8.1e-28 128.6 317 29.3
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 8.1e-28 128.6 318 31.4
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.1e-27 128.3 316 30.7
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.8e-27 127.5 327 30.0
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 3.1e-27 126.7 322 32.0
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 3.1e-27 126.7 323 31.3
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 5.3e-27 125.9 321 30.2
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 6.9e-27 125.6 315 32.1
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 6.9e-27 125.6 318 30.8
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 6.9e-27 125.6 324 30.2
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 6.9e-27 125.6 325 31.4
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 1.2e-26 124.8 321 30.2
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 2.0e-26 124.0 316 30.7
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 2.0e-26 124.0 206 36.9
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 3.4e-26 123.2 305 31.8
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 4.5e-26 122.9 316 30.1
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 5.8e-26 122.5 325 31.4
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 9.9e-26 121.7 326 31.0
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 1.3e-25 121.3 327 33.0
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.3e-25 121.3 321 29.6
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 1.7e-25 120.9 309 29.4
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 2.2e-25 120.6 327 32.4
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 2.9e-25 120.2 330 29.4
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 3.8e-25 119.8 324 31.2
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 8.4e-25 118.6 303 29.4
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 1.1e-24 118.2 336 31.2
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 1.1e-24 118.2 320 31.2
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 1.4e-24 117.9 274 32.5
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 7.1e-24 115.5 304 31.6
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 9.3e-24 115.2 322 30.4
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 2.7e-23 113.6 318 30.8
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 2.7e-23 113.6 335 31.9
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 3.5e-23 113.2 320 29.4
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.0e-22 111.7 327 32.1
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.0e-22 111.7 324 29.0
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.8e-22 110.9 326 30.1
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 3.0e-22 110.2 363 29.8
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 5.1e-22 109.4 329 29.5
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 1.1e-21 108.2 241 34.4
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 7.4e-21 105.5 326 29.1
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 1.6e-20 104.4 327 28.1
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 1.6e-20 104.4 322 30.4
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 2.1e-20 104.0 193 35.8
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 2.8e-20 103.6 286 29.0
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 2.8e-20 103.6 158 39.9
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 6.2e-20 102.4 320 29.7
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 1.1e-19 101.7 321 29.9
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 2.0e-18 97.4 327 27.5
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 5.8e-18 95.9 299 29.8
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 1.3e-17 94.7 289 28.4
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 1.7e-17 94.4 322 28.0
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 4.9e-17 92.8 294 29.3
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 4.9e-17 92.8 292 28.1
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 2.5e-16 90.5 386 26.7
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 7.1e-16 89.0 299 28.8
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 7.1e-16 89.0 291 28.9
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 1.8e-14 84.3 325 26.5
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.9e-13 80.9 259 28.6
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 1.8e-11 74.3 250 26.0
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 4.5e-10 69.7 184 28.8
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 7.6e-10 68.9 219 27.9


User provided reference genes

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