Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 3.7e-224 781.2 385 100.0
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 1.5e-39 167.9 191 45.0
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 1.9e-39 167.5 195 44.6
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 9.7e-39 165.2 191 44.5
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 2.0e-36 157.5 189 42.3
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 2.0e-36 157.5 266 33.8
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 2.6e-36 157.1 192 45.3
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 3.4e-36 156.8 191 44.0
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 5.9e-36 156.0 192 45.3
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 1.0e-35 155.2 190 40.5
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 1.0e-35 155.2 190 41.6
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 1.3e-35 154.8 205 39.0
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 1.3e-35 154.8 205 39.0
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 1.7e-35 154.5 188 39.9
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 2.9e-35 153.7 246 36.2
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 6.5e-35 152.5 236 35.2
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 8.5e-35 152.1 191 38.7
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 1.4e-34 151.4 187 39.0
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.9e-34 151.0 191 42.4
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 2.5e-34 150.6 185 43.2
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 3.2e-34 150.2 275 33.1
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 7.2e-34 149.1 197 38.1
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 9.4e-34 148.7 229 34.9
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 1.2e-33 148.3 185 38.9
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 2.1e-33 147.5 195 36.4
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 2.7e-33 147.1 195 40.5
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 7.9e-33 145.6 194 39.2
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 7.9e-33 145.6 196 38.8
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 1.0e-32 145.2 188 39.9
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 1.4e-32 144.8 188 37.2
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 1.8e-32 144.4 192 40.6
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.5e-31 141.4 192 39.1
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 1.5e-31 141.4 188 38.3
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 2.0e-31 141.0 173 39.3
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 2.6e-31 140.6 189 37.6
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 2.6e-31 140.6 186 39.8
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 3.3e-31 140.2 182 40.7
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 3.3e-31 140.2 191 39.8
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 5.7e-31 139.4 191 37.7
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 7.4e-31 139.0 190 39.5
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 7.4e-31 139.0 185 38.4
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 9.7e-31 138.7 242 37.6
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 9.7e-31 138.7 242 37.6
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 3.7e-30 136.7 183 37.2
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 3.7e-30 136.7 193 39.4
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 3.7e-30 136.7 194 39.2
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 8.2e-30 135.6 187 38.0
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 8.2e-30 135.6 194 36.6
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 1.1e-29 135.2 218 33.5
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.1e-29 135.2 177 37.3
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 1.4e-29 134.8 177 36.7
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.8e-29 134.4 195 37.4
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 3.1e-29 133.7 190 37.4
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 3.1e-29 133.7 192 35.9
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 3.1e-29 133.7 198 34.8
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 3.1e-29 133.7 177 39.0
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 4.1e-29 133.3 193 37.8
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 5.3e-29 132.9 186 38.2
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 5.3e-29 132.9 214 36.0
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 5.3e-29 132.9 199 37.7
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 5.3e-29 132.9 187 39.6
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 5.3e-29 132.9 189 38.6
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 6.9e-29 132.5 186 37.6
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 1.2e-28 131.7 189 36.0
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 1.5e-28 131.3 190 36.3
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 2.0e-28 131.0 219 34.7
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 2.0e-28 131.0 188 36.7
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 2.6e-28 130.6 189 38.1
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 3.4e-28 130.2 268 31.7
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 4.5e-28 129.8 188 35.1
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 4.5e-28 129.8 188 37.2
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 5.9e-28 129.4 174 36.2
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 1.0e-27 128.6 241 34.4
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 1.0e-27 128.6 217 33.6
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 1.3e-27 128.3 186 38.2
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 1.3e-27 128.3 192 33.9
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 1.7e-27 127.9 174 37.9
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 1.7e-27 127.9 193 37.8
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 1.7e-27 127.9 170 39.4
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 1.7e-27 127.9 189 36.0
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 2.2e-27 127.5 190 33.7
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 2.2e-27 127.5 199 33.7
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 3.8e-27 126.7 168 39.3
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 5.0e-27 126.3 185 34.6
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 8.5e-27 125.6 183 37.2
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 8.5e-27 125.6 193 38.3
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 8.5e-27 125.6 199 34.2
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 1.1e-26 125.2 243 32.5
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 1.4e-26 124.8 195 36.9
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 1.4e-26 124.8 292 29.8
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 1.9e-26 124.4 201 34.3
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 2.5e-26 124.0 207 35.7
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 3.2e-26 123.6 200 36.5
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 3.2e-26 123.6 187 34.8
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.2e-26 123.6 224 32.6
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 4.2e-26 123.2 192 33.3
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 5.5e-26 122.9 189 37.0
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 5.5e-26 122.9 171 38.0
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 9.4e-26 122.1 185 36.8
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.2e-25 121.7 190 31.6
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 1.2e-25 121.7 177 39.0
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 4.7e-25 119.8 208 34.1
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 4.7e-25 119.8 187 33.7
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 1.8e-24 117.9 190 37.4
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 2.3e-24 117.5 191 32.5
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 3.0e-24 117.1 187 32.1
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 3.9e-24 116.7 174 37.4
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 3.9e-24 116.7 174 37.4
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 5.2e-24 116.3 175 38.3
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 6.7e-24 115.9 252 29.4
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 6.7e-24 115.9 170 36.5
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 8.8e-24 115.5 218 32.6
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 1.1e-23 115.2 225 32.4
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 4.4e-23 113.2 174 36.8
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 7.4e-23 112.5 174 36.8
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 7.4e-23 112.5 261 30.3
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 2.8e-22 110.5 319 26.3
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 4.8e-22 109.8 141 39.0
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 6.3e-22 109.4 178 32.0
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 1.4e-21 108.2 175 35.4
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 1.6e-20 104.8 166 37.3
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 3.5e-20 103.6 166 34.3
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.3e-19 101.7 186 31.7
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 1.7e-19 101.3 153 32.7
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 2.2e-19 100.9 134 30.6
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 3.8e-19 100.1 135 35.6
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 8.5e-19 99.0 117 39.3
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 1.1e-18 98.6 174 30.5
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 3.2e-18 97.1 194 33.0
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 3.2e-18 97.1 173 30.6
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 3.2e-18 97.1 260 27.3
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 4.2e-18 96.7 176 32.4
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 5.5e-18 96.3 207 30.0
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 7.2e-18 95.9 172 32.0
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 7.2e-18 95.9 164 31.7
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 2.7e-17 94.0 146 34.2
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 1.8e-16 91.3 146 32.9
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.8e-16 91.3 135 37.8
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 2.3e-16 90.9 153 34.6
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 2.3e-16 90.9 148 35.1
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 2.3e-16 90.9 149 34.9
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 2.3e-16 90.9 149 34.9
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 4.0e-16 90.1 118 39.8
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 6.7e-16 89.4 186 33.3
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 3.3e-15 87.0 90 40.0
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 1.3e-14 85.1 131 41.2
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 1.4e-13 81.6 115 35.7
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.8e-13 81.3 89 40.4
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 3.1e-13 80.5 177 28.8
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 2.9e-11 73.9 98 35.7
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 6.5e-11 72.8 92 33.7
AagrBONN_evm.TU.Sc2ySwM_117.2824 Anthoceros agrestis HOM05D003860 ORTHO05D004218 4.2e-10 70.1 129 31.0
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 5.5e-10 69.7 118 31.4
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.6e-09 68.2 94 37.2
Pp3c23_3470 Physcomitrium patens HOM05D003141 ORTHO05D000421 1.2e-07 62.0 170 27.1
Rhsim04G0013900 Rhododendron simsii HOM05D001580 ORTHO05D001517 2.6e-07 60.8 329 22.8
Sopen11g007360 Solanum pennellii HOM05D001580 ORTHO05D001517 1.3e-06 58.5 193 29.0
PSO675G2706 Papaver somniferum HOM05D001580 ORTHO05D001517 1.7e-06 58.2 163 28.2
PSO541G3019 Papaver somniferum HOM05D001580 ORTHO05D001517 2.2e-06 57.8 163 28.2
Pp3c20_13303 Physcomitrium patens HOM05D003141 ORTHO05D000421 2.2e-06 57.8 223 27.4
CiPaw.12G136600 Carya illinoinensis HOM05D001580 ORTHO05D001517 3.7e-06 57.0 211 25.1
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 4.8e-06 56.6 179 27.4
Pp3c20_13300 Physcomitrium patens HOM05D003141 ORTHO05D000421 4.8e-06 56.6 197 27.4
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 4.8e-06 56.6 64 43.8
Nitab4.5_0011356g0020 Nicotiana tabacum HOM05D001580 ORTHO05D001517 6.3e-06 56.2 166 27.1


User provided reference genes

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