Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0378 Marchantia polymorpha HOM05D007170 ORTHO05D009243 0.0e+00 2908.6 1500 100.0
Pp3c3_20180 Physcomitrium patens HOM05D007170 ORTHO05D009243 0.0e+00 1390.9 1455 53.1
SEGI_23823 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 1.0e-309 1067.4 1244 49.4
TAR626G1158 Trochodendron aralioides HOM05D007170 ORTHO05D009243 4.3e-308 1062.0 1475 43.3
Nn3g20634 Nelumbo nucifera HOM05D007170 ORTHO05D009243 1.1e-300 1037.3 1463 42.6
AagrBONN_evm.TU.Sc2ySwM_344.1322 Anthoceros agrestis HOM05D007170 ORTHO05D009243 2.1e-299 1033.1 1212 49.0
ATR1098G002 Amborella trichopoda HOM05D007170 ORTHO05D009243 2.0e-297 1026.5 1490 41.8
MBI02_g15149_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 3.4e-297 1025.8 1521 41.2
Cfa020492 Carpinus fangiana HOM05D007170 ORTHO05D009243 1.4e-290 1003.8 1459 41.9
Gohir.D07G192100 Gossypium hirsutum HOM05D007170 ORTHO05D009243 2.2e-288 996.5 1488 41.7
Aqoxy3G00362 Aquilegia oxysepala HOM05D007170 ORTHO05D009243 1.1e-287 994.2 1473 40.7
Duzib138G0290 Durio zibethinus HOM05D007170 ORTHO05D009243 1.1e-287 994.2 1501 40.6
Gorai.001G214900 Gossypium raimondii HOM05D007170 ORTHO05D009243 1.1e-287 994.2 1488 41.9
Prupe.3G191100 Prunus persica HOM05D007170 ORTHO05D009243 7.1e-287 991.5 1482 41.2
PSO675G2674 Papaver somniferum HOM05D007170 ORTHO05D009243 3.5e-286 989.2 1494 40.5
RcHm_v2.0_Chr2g0154431 Rosa chinensis HOM05D007170 ORTHO05D009243 1.7e-285 986.9 1471 41.8
FvH4_6g39900 Fragaria vesca HOM05D007170 ORTHO05D009243 1.1e-284 984.2 1467 41.0
PSO541G2476 Papaver somniferum HOM05D007170 ORTHO05D009243 4.3e-284 982.2 1492 40.6
Actinidia06806 Actinidia chinensis HOM05D007170 ORTHO05D009243 2.8e-283 979.5 1504 41.0
Sabra06G0017000 Salix brachista HOM05D007170 ORTHO05D009243 1.4e-282 977.2 1487 41.5
Haze_09546 Corylus avellana HOM05D007170 ORTHO05D009243 3.1e-282 976.1 1529 40.6
Potri.006G023500 Populus trichocarpa HOM05D007170 ORTHO05D009243 3.4e-281 972.6 1472 41.3
GSVIVG01020797001 Vitis vinifera HOM05D007170 ORTHO05D009243 3.4e-281 972.6 1484 41.0
MD09G1135500 Malus domestica HOM05D007170 ORTHO05D009243 5.8e-281 971.8 1470 40.7
Thecc.01G177100 Theobroma cacao HOM05D007170 ORTHO05D009243 3.2e-279 966.1 1405 41.0
FAN14G4936 Fragaria x ananassa HOM05D007170 ORTHO05D009243 2.5e-276 956.4 1481 40.2
CANSAT64G1590 Cannabis sativa HOM05D007170 ORTHO05D009243 5.6e-276 955.3 1460 40.2
CiPaw.03G198500 Carya illinoinensis HOM05D007170 ORTHO05D009243 1.5e-273 947.2 1452 40.4
FAN02G4004 Fragaria x ananassa HOM05D007170 ORTHO05D009243 2.9e-272 943.0 1497 39.9
Atru.chr8.950 Acer truncatum HOM05D007170 ORTHO05D009243 2.7e-270 936.4 1509 39.6
Lsat_1_v5_gn_2_66140 Lactuca sativa HOM05D007170 ORTHO05D009243 1.3e-269 934.1 1487 39.5
DCAR_006644 Daucus carota HOM05D007170 ORTHO05D009243 6.6e-269 931.8 1486 39.8
Nitab4.5_0002247g0080 Nicotiana tabacum HOM05D007170 ORTHO05D009243 1.5e-268 930.6 1501 40.3
Solyc01g097110.2 Solanum lycopersicum HOM05D007170 ORTHO05D009243 1.4e-266 924.1 1485 40.3
Sopen01g040790 Solanum pennellii HOM05D007170 ORTHO05D009243 3.1e-266 922.9 1485 40.2
HanXRQChr10g0314771 Helianthus annuus HOM05D007170 ORTHO05D009243 4.9e-264 915.6 1475 38.8
Cc02_g31000 Coffea canephora HOM05D007170 ORTHO05D009243 8.4e-264 914.8 1473 39.9
Sc07g0002130 Simmondsia chinensis HOM05D007170 ORTHO05D009243 4.2e-263 912.5 1441 40.1
PGR031G3275 Punica granatum HOM05D007170 ORTHO05D009243 2.7e-262 909.8 1494 38.8
Manes.09G075018 Manihot esculenta HOM05D007170 ORTHO05D009243 8.1e-259 898.3 1487 38.2
AL7G40850 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 4.0e-258 896.0 1500 39.5
Peaxi162Scf00647g00012 Petunia axillaris HOM05D007170 ORTHO05D009243 3.4e-257 892.9 1517 39.2
BraA08t33150Z Brassica rapa HOM05D007170 ORTHO05D009243 3.8e-256 889.4 1503 38.8
BcaB04g18275 Brassica carinata HOM05D007170 ORTHO05D009243 1.4e-255 887.5 1516 38.2
A08p11580 Brassica napus HOM05D007170 ORTHO05D009243 2.5e-255 886.7 1508 38.7
BolC8t48255H Brassica oleracea HOM05D007170 ORTHO05D009243 1.5e-252 877.5 1529 38.4
BcaC07g37864 Brassica carinata HOM05D007170 ORTHO05D009243 7.4e-252 875.2 1510 38.4
Eucgr.A00891 Eucalyptus grandis HOM05D007170 ORTHO05D009243 1.3e-251 874.4 1488 37.8
Nitab4.5_0005905g0020 Nicotiana tabacum HOM05D007170 ORTHO05D009243 1.1e-250 871.3 1494 39.0
AT4G14970 Arabidopsis thaliana HOM05D007170 ORTHO05D009243 3.1e-250 869.8 1537 37.5
Ciclev10010909m.g Citrus clementina HOM05D007170 ORTHO05D009243 9.0e-250 868.2 1437 39.0
CSS0034103 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 3.0e-245 853.2 1251 40.7
Thhalv10024215m.g Eutrema salsugineum HOM05D007170 ORTHO05D009243 3.2e-239 833.2 1492 37.5
SalBow8G4071 Salvia bowleyana HOM05D007170 ORTHO05D009243 7.2e-239 832.0 1512 36.8
SGA_v2.0_scaffold172G38980 Striga asiatica HOM05D007170 ORTHO05D009243 1.4e-234 817.8 1581 36.1
ECA238G4341 Erigeron canadensis HOM05D007170 ORTHO05D009243 6.9e-234 815.5 1369 37.9
Oeu038464.1 Olea europaea HOM05D007170 ORTHO05D009243 1.2e-230 804.7 1433 38.0
Lj7A482G28 Lonicera japonica HOM05D007170 ORTHO05D009243 2.8e-198 697.2 1353 35.6
Zm00001eb117500 Zea mays HOM05D007170 ORTHO05D009243 3.4e-196 690.3 1286 35.8
CBR_g3147 Chara braunii HOM05D007170 ORTHO05D009243 2.9e-195 687.2 1003 42.6
Cpa.g.sc8.299 Carica papaya HOM05D007170 ORTHO05D009243 5.2e-189 666.4 1521 33.3
Migut.B01114 Erythranthe guttata HOM05D007170 ORTHO05D009243 1.8e-181 641.3 1095 38.5
Os07g0154400 Oryza sativa ssp. japonica HOM05D007170 ORTHO05D009243 2.6e-180 637.5 1080 37.4
Dinv20277 Davidia involucrata HOM05D007170 ORTHO05D009243 1.7e-171 608.2 766 45.7
Gohir.A07G185500 Gossypium hirsutum HOM05D007170 ORTHO05D009243 2.2e-163 581.3 944 40.4
CSS0006494 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 6.4e-163 579.7 999 37.0
CSS0002264 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 2.0e-156 558.1 999 36.0
HPP92_019550 Vanilla planifolia HOM05D007170 ORTHO05D009243 1.5e-140 505.4 690 43.0
Hma1.2p1_0892F.1_g233440 Hydrangea macrophylla HOM05D007170 ORTHO05D009243 1.6e-126 458.8 535 46.9
CAN.G134.71 Capsicum annuum HOM05D007170 ORTHO05D009243 4.7e-113 414.1 533 44.7
HPP92_019551 Vanilla planifolia HOM05D007170 ORTHO05D009243 6.5e-107 393.7 766 35.8
CARHR221630 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.6e-89 335.9 397 44.6
Dinv20276 Davidia involucrata HOM05D007170 ORTHO05D009243 1.8e-85 322.4 662 34.9
CBR_g54165 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-62 245.0 234 50.9
Gohir.A07G185533 Gossypium hirsutum HOM05D007170 ORTHO05D009243 2.8e-49 202.2 204 52.0
CAN.G134.69 Capsicum annuum HOM05D007170 ORTHO05D009243 6.2e-49 201.1 702 29.3
SEGI_21897 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 6.0e-44 184.5 238 43.7
CARHR221670 Cardamine hirsuta HOM05D007170 ORTHO05D009243 2.3e-43 182.6 202 47.5
Dinv20273 Davidia involucrata HOM05D007170 ORTHO05D009243 6.9e-40 171.0 251 38.6
COL.COLO4_06563 Corchorus olitorius HOM05D007170 ORTHO05D009243 1.5e-34 153.3 126 58.7
CDE07G1176 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 3.1e-24 119.0 150 44.7
CARHR221640 Cardamine hirsuta HOM05D007170 ORTHO05D009243 2.2e-22 112.8 145 41.4
QL08p022040 Quercus lobata HOM05D007170 ORTHO05D009243 1.1e-21 110.5 127 46.5
Cpa.g.sc8.300 Carica papaya HOM05D007170 ORTHO05D009243 5.1e-19 101.7 147 40.8
CARHR221660 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.9e-18 99.8 335 30.4
Zm00001eb031530 Zea mays HOM05D007170 ORTHO05D009243 6.3e-17 94.7 117 43.6
Cre10.g453650 Chlamydomonas reinhardtii HOM05D007170 ORTHO05D009243 8.2e-17 94.4 265 32.1
Zm00001eb010760 Zea mays HOM05D007170 ORTHO05D009243 6.9e-16 91.3 117 42.7
Zm00001eb442000 Zea mays HOM05D007170 ORTHO05D009243 6.9e-16 91.3 117 42.7
Dinv20272 Davidia involucrata HOM05D007170 ORTHO05D009243 7.6e-15 87.8 109 45.9
CBR_g54163 Chara braunii HOM05D007170 ORTHO05D009243 3.2e-13 82.4 191 30.4
MBI08_g17991_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 2.1e-12 79.7 95 43.2
QL02p039588 Quercus lobata HOM05D007170 ORTHO05D009243 2.3e-11 76.3 136 36.8
GSVIVG01038387001 Vitis vinifera HOM05D007170 ORTHO05D009243 9.1e-08 64.3 52 63.5
Carub.0007s2712 Capsella rubella HOM05D007170 ORTHO05D009243 1.2e-07 63.9 69 47.8


User provided reference genes

Program Settings