Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 1.7e-152 542.7 288 100.0
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 1.5e-84 317.0 288 62.2
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 6.3e-83 311.6 222 70.7
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 1.8e-82 310.1 203 75.4
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 4.2e-71 272.3 179 73.2
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 6.1e-70 268.5 204 64.7
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 1.0e-69 267.7 208 63.5
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 3.0e-69 266.2 208 61.1
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 3.0e-69 266.2 210 62.9
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 6.7e-69 265.0 210 60.5
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 6.7e-69 265.0 228 57.5
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 8.8e-69 264.6 249 55.4
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 8.8e-69 264.6 221 59.7
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 1.1e-68 264.2 215 59.1
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 1.5e-68 263.8 208 60.1
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 2.0e-68 263.5 223 59.6
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 2.0e-68 263.5 208 61.1
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 2.0e-68 263.5 208 61.1
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 2.0e-68 263.5 208 61.1
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 2.6e-68 263.1 267 52.8
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 3.3e-68 262.7 207 62.8
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 3.3e-68 262.7 215 60.5
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 4.4e-68 262.3 208 60.6
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 4.4e-68 262.3 208 60.6
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 4.4e-68 262.3 208 60.6
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 4.4e-68 262.3 226 61.1
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 4.4e-68 262.3 210 62.4
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 7.4e-68 261.5 269 53.2
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 9.7e-68 261.2 210 60.0
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 9.7e-68 261.2 239 54.4
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 1.3e-67 260.8 236 54.7
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 1.3e-67 260.8 208 60.1
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 1.7e-67 260.4 194 63.4
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 1.7e-67 260.4 194 63.4
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 1.7e-67 260.4 194 63.4
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 2.2e-67 260.0 239 54.0
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 2.8e-67 259.6 218 59.2
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 3.7e-67 259.2 248 54.8
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 4.8e-67 258.8 231 56.3
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 4.8e-67 258.8 222 59.5
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 4.8e-67 258.8 215 60.5
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 4.8e-67 258.8 213 59.6
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 6.3e-67 258.5 228 57.0
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 6.3e-67 258.5 237 57.0
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 6.3e-67 258.5 209 60.8
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 8.2e-67 258.1 215 59.5
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 8.2e-67 258.1 215 59.5
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 8.2e-67 258.1 219 59.8
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 1.1e-66 257.7 236 55.1
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 1.1e-66 257.7 270 53.3
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 1.4e-66 257.3 200 63.5
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 1.4e-66 257.3 194 63.9
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 1.4e-66 257.3 218 60.6
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 1.4e-66 257.3 236 57.2
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 1.8e-66 256.9 269 51.7
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 1.8e-66 256.9 213 59.2
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 3.1e-66 256.1 197 61.9
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 4.1e-66 255.8 225 56.0
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 5.3e-66 255.4 270 52.2
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 5.3e-66 255.4 234 56.8
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 5.3e-66 255.4 239 54.4
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 6.9e-66 255.0 210 61.0
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 6.9e-66 255.0 208 59.6
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 6.9e-66 255.0 202 63.4
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 9.1e-66 254.6 231 55.4
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 9.1e-66 254.6 182 65.9
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.2e-65 254.2 207 61.4
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 1.2e-65 254.2 235 55.7
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 1.5e-65 253.8 248 54.4
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 1.5e-65 253.8 197 62.9
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.5e-65 253.8 239 54.0
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 1.5e-65 253.8 197 62.9
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 2.0e-65 253.4 235 54.9
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.4e-65 252.7 215 59.5
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.4e-65 252.7 215 59.5
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 3.4e-65 252.7 233 54.9
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 5.9e-65 251.9 233 55.8
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 7.7e-65 251.5 225 56.4
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 7.7e-65 251.5 215 59.1
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 7.7e-65 251.5 215 59.1
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 7.7e-65 251.5 215 59.1
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 7.7e-65 251.5 215 59.1
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 7.7e-65 251.5 234 53.4
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 1.0e-64 251.1 222 55.0
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 1.3e-64 250.8 231 53.7
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 1.3e-64 250.8 233 55.8
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 2.2e-64 250.0 238 52.1
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 2.2e-64 250.0 194 60.8
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 2.9e-64 249.6 228 56.1
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 2.9e-64 249.6 233 57.5
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 3.8e-64 249.2 232 54.7
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 3.8e-64 249.2 247 51.0
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 3.8e-64 249.2 215 58.1
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 6.5e-64 248.4 239 53.6
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 8.5e-64 248.1 222 54.1
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 1.1e-63 247.7 194 59.8
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 5.5e-63 245.4 237 55.3
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 7.2e-63 245.0 180 64.4
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 1.2e-62 244.2 214 57.9
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 1.6e-62 243.8 227 55.1
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 2.7e-62 243.0 233 54.5
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 3.6e-62 242.7 204 58.3
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 1.8e-61 240.4 295 47.5
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 4.8e-59 232.3 201 56.2
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 4.1e-58 229.2 195 57.9
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 9.1e-58 228.0 248 52.0
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 5.0e-56 222.2 184 58.2
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 2.5e-55 219.9 169 60.9
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 1.1e-50 204.5 158 62.0
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 1.1e-50 204.5 158 62.0
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 2.4e-50 203.4 218 53.2
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 5.3e-50 202.2 141 66.0
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 3.5e-49 199.5 206 52.9
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.0e-48 198.0 151 62.9
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 4.8e-43 179.1 208 49.0
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 1.6e-41 174.1 153 50.3
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 3.5e-41 172.9 162 55.6
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 1.0e-40 171.4 158 49.4
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 1.1e-39 167.9 129 65.1
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 2.0e-33 147.1 177 41.8
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.7e-27 127.5 114 57.0
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 4.9e-27 125.9 112 58.9
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 8.3e-27 125.2 100 58.0
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 1.2e-22 111.3 80 68.8
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 1.7e-19 100.9 190 34.7
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 1.7e-19 100.9 190 34.7
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 4.9e-19 99.4 190 34.2
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 5.4e-18 95.9 67 65.7
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 2.8e-14 83.6 157 33.1
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 1.8e-13 80.9 75 52.0
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 5.4e-10 69.3 54 57.4
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 1.2e-09 68.2 62 54.8
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 3.9e-08 63.2 59 47.5
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 1.9e-07 60.8 38 71.1


User provided reference genes

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