Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 4.2e-235 817.8 450 100.0
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 2.5e-70 270.4 497 42.3
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 5.4e-65 252.7 449 40.5
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 2.0e-64 250.8 434 42.2
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 2.7e-64 250.4 441 39.7
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 3.5e-64 250.0 446 39.7
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 3.5e-64 250.0 395 41.3
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 4.6e-64 249.6 453 40.2
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 2.3e-63 247.3 441 39.7
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 3.9e-63 246.5 428 39.5
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 2.5e-62 243.8 439 39.4
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 2.5e-62 243.8 439 39.4
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 2.5e-62 243.8 445 40.2
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 3.3e-62 243.4 446 39.9
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 3.3e-62 243.4 453 39.3
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 7.3e-62 242.3 445 37.1
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 7.3e-62 242.3 437 37.8
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 9.5e-62 241.9 444 39.0
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.6e-61 241.1 439 38.3
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.6e-61 241.1 442 38.2
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 1.6e-61 241.1 440 37.0
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 2.1e-61 240.7 442 38.7
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.1e-61 240.7 437 38.4
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 2.8e-61 240.4 442 37.6
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 2.8e-61 240.4 344 43.3
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 4.7e-61 239.6 453 38.9
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 8.0e-61 238.8 434 38.5
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 8.0e-61 238.8 416 39.9
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 8.0e-61 238.8 439 37.4
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 1.1e-60 238.4 437 39.1
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 1.1e-60 238.4 431 38.7
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 1.8e-60 237.7 438 38.4
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 1.8e-60 237.7 423 37.6
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 2.3e-60 237.3 323 45.8
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 5.2e-60 236.1 438 39.0
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 8.9e-60 235.3 420 37.6
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 8.9e-60 235.3 431 38.3
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 1.2e-59 235.0 435 37.5
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 1.5e-59 234.6 330 45.5
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 1.5e-59 234.6 435 39.1
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 1.5e-59 234.6 443 38.8
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 2.0e-59 234.2 448 36.8
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 3.4e-59 233.4 444 39.0
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 5.8e-59 232.6 440 38.4
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 7.5e-59 232.3 444 38.5
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 9.8e-59 231.9 436 37.6
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 1.3e-58 231.5 444 36.7
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 1.3e-58 231.5 446 36.5
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 1.7e-58 231.1 431 39.4
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 2.2e-58 230.7 395 39.0
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 2.9e-58 230.3 447 38.7
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 3.7e-58 229.9 429 38.7
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 6.4e-58 229.2 440 38.0
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 8.3e-58 228.8 326 42.9
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 8.3e-58 228.8 440 37.3
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 1.1e-57 228.4 449 38.3
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 1.1e-57 228.4 423 38.1
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.9e-57 227.6 324 42.9
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 5.4e-57 226.1 448 37.5
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 7.1e-57 225.7 438 36.5
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 9.2e-57 225.3 323 43.3
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 1.2e-56 224.9 438 37.0
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 2.7e-56 223.8 444 37.2
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 4.6e-56 223.0 323 43.0
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 4.6e-56 223.0 432 35.6
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 6.0e-56 222.6 416 39.7
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 7.8e-56 222.2 417 36.9
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 2.3e-55 220.7 408 37.7
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 3.9e-55 219.9 321 43.3
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 8.6e-55 218.8 411 37.5
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.1e-54 218.4 346 40.2
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 3.3e-54 216.9 436 37.4
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 3.3e-54 216.9 438 36.3
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 4.3e-54 216.5 328 42.7
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 2.3e-52 210.7 474 35.7
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 3.1e-52 210.3 443 36.6
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 3.1e-52 210.3 320 42.5
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 7.6e-51 205.7 455 34.7
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.3e-50 204.9 311 41.2
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.7e-50 204.5 421 35.9
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 8.3e-50 202.2 415 37.6
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 1.1e-49 201.8 446 34.8
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 1.9e-49 201.1 320 38.8
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 2.4e-49 200.7 430 35.1
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 4.1e-49 199.9 446 33.2
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 5.4e-49 199.5 320 38.8
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 7.1e-49 199.1 428 35.3
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 1.6e-48 198.0 320 39.1
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 2.7e-48 197.2 320 38.4
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 3.5e-48 196.8 325 36.6
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 3.5e-48 196.8 436 33.3
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 6.0e-48 196.1 420 39.0
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 6.0e-48 196.1 428 35.5
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 5.1e-47 193.0 308 43.2
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 1.9e-46 191.0 455 34.5
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 5.6e-46 189.5 328 37.5
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 9.6e-46 188.7 429 34.3
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 3.6e-45 186.8 415 34.9
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 3.6e-45 186.8 439 33.9
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 4.7e-45 186.4 426 37.3
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.1e-44 185.3 420 34.5
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.1e-44 185.3 326 37.1
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.4e-44 184.9 433 33.5
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 3.4e-43 180.3 452 32.5
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 7.6e-43 179.1 437 34.3
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 2.2e-42 177.6 444 33.1
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.4e-41 174.9 400 36.8
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.3e-39 167.5 316 38.0
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 3.0e-39 167.2 435 33.6
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 9.0e-36 155.6 303 39.9
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 6.4e-34 149.4 323 36.2
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 6.0e-32 142.9 394 31.0
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 3.3e-30 137.1 281 38.8
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 5.6e-30 136.3 187 46.0
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 4.8e-29 133.3 320 32.8
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 8.1e-29 132.5 326 34.7
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 1.3e-26 125.2 292 37.3
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.7e-26 124.8 374 32.6
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 8.4e-26 122.5 255 38.4
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 3.9e-23 113.6 448 26.6
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.7e-21 107.1 92 52.2
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 2.9e-18 97.4 141 44.7
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 2.9e-18 97.4 141 44.7
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 6.0e-16 89.7 237 35.0
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 2.1e-13 81.3 97 53.6
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 6.5e-10 69.7 140 39.3
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 7.1e-09 66.2 74 47.3
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.8e-07 61.6 62 56.5
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 5.1e-07 60.1 43 55.8
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 5.7e-06 56.6 97 42.3


User provided reference genes

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