Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 3.0e-155 552.0 319 100.0
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 2.6e-53 213.4 315 52.7
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 1.7e-49 200.7 310 50.0
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 2.2e-49 200.3 309 49.2
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 2.9e-49 199.9 324 39.2
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 2.9e-49 199.9 326 37.7
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 5.0e-49 199.1 310 49.7
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 5.0e-49 199.1 324 38.6
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 6.5e-49 198.7 324 38.9
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 8.5e-49 198.4 312 46.5
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 1.1e-48 198.0 324 40.1
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 1.5e-48 197.6 326 38.0
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 1.5e-48 197.6 314 47.1
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 1.5e-48 197.6 323 48.3
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 4.2e-48 196.1 325 45.2
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 5.5e-48 195.7 324 48.1
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 5.5e-48 195.7 320 43.8
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 5.5e-48 195.7 323 42.1
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 7.2e-48 195.3 326 37.7
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 7.2e-48 195.3 324 44.8
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 7.2e-48 195.3 323 47.7
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 1.6e-47 194.1 324 37.0
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 1.6e-47 194.1 326 46.0
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 2.1e-47 193.7 323 44.6
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 2.7e-47 193.4 323 40.9
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 2.7e-47 193.4 325 46.5
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 2.7e-47 193.4 326 43.6
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 2.7e-47 193.4 323 35.9
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 3.6e-47 193.0 313 37.1
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 4.7e-47 192.6 321 46.1
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 6.1e-47 192.2 321 45.5
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 8.0e-47 191.8 321 46.4
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 8.0e-47 191.8 322 39.1
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 8.0e-47 191.8 309 36.6
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 1.0e-46 191.4 321 48.0
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.3e-46 190.3 324 47.2
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 2.3e-46 190.3 324 45.4
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 3.0e-46 189.9 315 36.8
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 3.0e-46 189.9 328 43.3
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 3.0e-46 189.9 324 46.6
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 4.0e-46 189.5 321 42.1
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 5.2e-46 189.1 330 45.2
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 5.2e-46 189.1 323 43.3
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 6.8e-46 188.7 328 47.6
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 8.8e-46 188.3 319 43.9
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 8.8e-46 188.3 310 42.6
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 1.2e-45 188.0 320 43.4
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.5e-45 187.6 315 36.2
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 2.0e-45 187.2 325 45.8
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 2.6e-45 186.8 320 35.9
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 3.4e-45 186.4 310 48.1
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 3.4e-45 186.4 315 36.2
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 4.4e-45 186.0 320 38.4
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 4.4e-45 186.0 325 44.6
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 5.7e-45 185.7 310 39.7
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 5.7e-45 185.7 326 46.3
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 7.5e-45 185.3 317 47.6
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.3e-44 184.5 319 46.4
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 1.7e-44 184.1 310 38.1
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.8e-44 183.3 341 41.9
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 3.7e-44 183.0 323 35.9
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 3.7e-44 183.0 314 45.9
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 4.9e-44 182.6 326 45.1
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 6.3e-44 182.2 324 42.9
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 6.3e-44 182.2 321 44.2
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 8.3e-44 181.8 327 43.7
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 8.3e-44 181.8 320 42.8
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.1e-43 181.4 326 45.1
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 1.1e-43 181.4 334 46.4
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 2.4e-43 180.3 244 51.6
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 2.4e-43 180.3 323 36.2
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 2.4e-43 180.3 326 38.3
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 3.1e-43 179.9 340 45.9
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 9.2e-43 178.3 325 44.9
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 2.0e-42 177.2 315 35.9
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.7e-42 176.8 325 46.5
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 2.7e-42 176.8 325 46.8
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 3.5e-42 176.4 308 38.3
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 3.5e-42 176.4 325 46.2
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 5.9e-42 175.6 253 49.8
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 5.9e-42 175.6 309 33.7
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 1.3e-41 174.5 320 45.3
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 2.3e-41 173.7 333 36.6
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 5.0e-41 172.6 359 37.6
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 5.0e-41 172.6 359 37.6
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 5.0e-41 172.6 310 34.5
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 6.6e-41 172.2 320 46.2
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 1.5e-40 171.0 198 59.1
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 1.9e-40 170.6 351 43.3
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 3.3e-40 169.9 219 52.5
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 9.5e-40 168.3 185 63.8
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 2.1e-39 167.2 352 31.5
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 6.1e-39 165.6 215 39.1
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.8e-38 164.1 311 38.6
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 5.7e-37 159.1 126 52.4
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 5.4e-35 152.5 127 52.8
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 5.4e-35 152.5 286 46.9
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 1.6e-34 151.0 324 32.1
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 1.0e-33 148.3 357 38.9
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 1.0e-33 148.3 357 38.9
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 1.0e-33 148.3 357 29.7
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 5.0e-33 146.0 297 46.1
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 1.1e-32 144.8 300 41.3
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 1.1e-32 144.8 296 45.6
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 5.6e-32 142.5 326 31.9
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 8.0e-31 138.7 257 34.6
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 3.4e-29 133.3 338 37.0
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 3.4e-29 133.3 215 49.8
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 5.8e-29 132.5 298 44.6
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 1.4e-27 127.9 271 34.7
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.4e-27 127.1 282 33.3
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 7.8e-26 122.1 103 49.5
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 5.0e-25 119.4 276 45.7
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 5.0e-25 119.4 276 45.7
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 1.5e-24 117.9 330 37.6
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 9.5e-24 115.2 271 40.6
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 1.8e-22 110.9 71 57.7
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 5.8e-21 105.9 286 30.1
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 1.7e-20 104.4 252 35.3
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 2.1e-18 97.4 261 42.5
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 2.7e-18 97.1 71 57.7
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 6.0e-18 95.9 125 33.6
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.7e-17 94.4 138 55.1
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 1.5e-16 91.3 63 52.4
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 3.3e-16 90.1 236 29.7
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 4.3e-16 89.7 249 44.6
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.2e-15 88.2 247 43.7
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 1.2e-15 88.2 86 46.5
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 4.7e-15 86.3 250 30.8
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 6.2e-15 85.9 258 42.2
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 1.4e-14 84.7 258 44.6
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 5.2e-14 82.8 254 29.1
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 2.6e-13 80.5 252 29.4
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 2.6e-13 80.5 266 27.1
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 2.6e-13 80.5 248 43.5
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 7.6e-13 79.0 47 59.6
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 8.4e-12 75.5 249 41.4
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 8.4e-12 75.5 256 43.8
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 3.2e-11 73.6 239 41.8
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 5.4e-11 72.8 252 44.4
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 7.1e-11 72.4 244 33.6
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 2.1e-10 70.9 76 42.1
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 3.5e-10 70.1 251 28.3
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 3.5e-10 70.1 251 28.3
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 3.0e-09 67.0 299 24.7
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 3.0e-09 67.0 150 48.0
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 5.6e-08 62.8 255 25.9
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 2.4e-06 57.4 38 52.6


User provided reference genes

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