Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 1.3e-285 985.7 490 100.0
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 5.7e-76 289.3 517 36.9
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 4.5e-73 279.6 543 37.4
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 1.5e-52 211.5 443 35.9
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 1.7e-48 198.0 440 33.0
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 2.9e-48 197.2 516 29.1
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 9.4e-47 192.2 515 31.1
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 1.0e-45 188.7 476 30.9
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.0e-44 184.5 507 29.0
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.0e-44 184.5 507 29.0
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 2.0e-44 184.5 507 29.0
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 2.6e-44 184.1 519 29.1
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 5.7e-44 183.0 510 30.8
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 7.5e-44 182.6 514 29.2
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 3.7e-43 180.3 512 28.9
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 3.7e-43 180.3 515 29.7
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 6.3e-43 179.5 520 29.2
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 8.2e-43 179.1 505 28.9
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 1.1e-42 178.7 530 28.9
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 3.1e-42 177.2 519 29.5
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 4.1e-42 176.8 541 29.2
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 5.3e-42 176.4 506 29.1
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 7.0e-42 176.0 505 29.7
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 9.1e-42 175.6 511 29.5
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 9.1e-42 175.6 513 29.2
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 9.1e-42 175.6 511 29.0
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 1.2e-41 175.3 516 29.5
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 4.5e-41 173.3 552 27.4
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 7.7e-41 172.6 514 29.0
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.0e-40 172.2 553 28.6
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 1.0e-40 172.2 520 29.4
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 1.0e-40 172.2 515 29.3
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.3e-40 171.8 518 28.6
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 1.3e-40 171.8 514 29.0
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 1.7e-40 171.4 509 29.3
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 1.7e-40 171.4 518 28.0
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.7e-40 171.4 511 27.2
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 2.2e-40 171.0 509 28.1
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 2.2e-40 171.0 540 27.8
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 2.9e-40 170.6 520 28.3
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 2.9e-40 170.6 520 28.3
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 2.9e-40 170.6 520 28.1
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 3.8e-40 170.2 506 28.9
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 3.8e-40 170.2 512 30.1
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 5.0e-40 169.9 517 27.7
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 5.0e-40 169.9 514 28.6
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 8.5e-40 169.1 531 27.5
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 8.5e-40 169.1 526 27.8
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 1.1e-39 168.7 506 29.1
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 1.1e-39 168.7 514 27.4
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 1.5e-39 168.3 515 29.1
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 2.5e-39 167.5 536 26.7
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 2.5e-39 167.5 507 28.6
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 3.2e-39 167.2 529 28.0
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 5.5e-39 166.4 533 27.8
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 5.5e-39 166.4 516 29.3
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 5.5e-39 166.4 541 27.9
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 5.5e-39 166.4 526 27.8
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 7.2e-39 166.0 516 27.3
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 7.2e-39 166.0 522 28.4
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 7.2e-39 166.0 548 28.5
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 9.4e-39 165.6 493 27.4
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 9.4e-39 165.6 513 29.0
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 1.6e-38 164.9 533 28.0
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 2.1e-38 164.5 543 26.7
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 2.1e-38 164.5 498 29.7
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 2.1e-38 164.5 523 28.3
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 2.7e-38 164.1 508 27.6
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 3.6e-38 163.7 512 27.9
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 4.7e-38 163.3 490 27.3
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 4.7e-38 163.3 526 28.5
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 6.1e-38 162.9 514 28.6
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 6.1e-38 162.9 521 28.4
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 8.0e-38 162.5 499 27.7
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 8.0e-38 162.5 368 32.3
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 1.4e-37 161.8 545 28.6
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 1.4e-37 161.8 519 28.5
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 1.4e-37 161.8 501 29.9
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 2.3e-37 161.0 512 27.9
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 4.0e-37 160.2 533 27.6
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 5.2e-37 159.8 550 27.3
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 5.2e-37 159.8 550 27.3
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 6.8e-37 159.5 541 29.4
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 6.8e-37 159.5 544 26.8
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 1.2e-36 158.7 511 28.0
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 2.6e-36 157.5 513 28.7
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 2.6e-36 157.5 510 26.9
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 2.6e-36 157.5 355 33.8
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 3.4e-36 157.1 488 26.4
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 3.4e-36 157.1 532 27.4
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 1.7e-35 154.8 499 28.5
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 1.7e-35 154.8 486 26.7
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 2.8e-35 154.1 550 26.4
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 4.8e-35 153.3 526 28.3
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.3e-35 152.9 546 27.1
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 6.3e-35 152.9 530 27.4
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 8.3e-35 152.5 547 26.7
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 1.1e-34 152.1 495 27.3
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 1.4e-34 151.8 514 26.3
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 2.4e-34 151.0 534 27.2
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 3.1e-34 150.6 530 26.4
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 3.1e-34 150.6 530 25.7
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 4.1e-34 150.2 522 26.2
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 5.4e-34 149.8 532 26.3
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 1.6e-33 148.3 537 27.0
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 4.5e-33 146.7 488 25.0
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 4.5e-33 146.7 485 29.5
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 7.7e-33 146.0 528 26.9
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 1.3e-32 145.2 520 27.9
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 2.9e-32 144.1 519 25.8
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 3.8e-32 143.7 522 27.8
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 5.0e-32 143.3 512 27.0
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 1.2e-30 138.7 491 27.1
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 4.7e-30 136.7 518 27.0
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.4e-29 135.2 541 26.6
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 6.8e-29 132.9 555 25.9
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 2.6e-28 131.0 485 26.2
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 7.5e-28 129.4 473 27.1
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.3e-27 128.6 462 26.2
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.2e-27 127.9 496 26.4
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 1.1e-26 125.6 496 23.8
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 4.1e-26 123.6 126 45.2
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 9.2e-26 122.5 173 39.3
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 8.6e-24 115.9 386 27.7
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 2.5e-23 114.4 471 26.5
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 1.2e-22 112.1 219 30.6
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 8.0e-22 109.4 160 39.4
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.3e-21 107.8 453 23.6
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.0e-21 107.1 453 23.6
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.2e-21 106.7 465 24.3
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.2e-20 105.5 274 27.7
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.5e-20 102.8 277 28.9
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.5e-20 102.8 277 28.9
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 2.9e-19 100.9 498 23.5
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.4e-18 98.6 222 29.3
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 2.4e-18 97.8 186 32.3
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.2e-17 95.5 469 24.3
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 2.3e-16 91.3 131 42.0
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 2.5e-15 87.8 371 27.8
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.3e-15 87.0 309 25.6
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 5.2e-13 80.1 147 31.3
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 4.6e-09 67.0 53 52.8
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 2.3e-08 64.7 62 50.0
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 6.2e-06 56.6 206 27.2


User provided reference genes

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