Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0231 Marchantia polymorpha HOM05D006923 ORTHO05D008697 5.2e-151 537.7 277 100.0
Pp3c3_23340 Physcomitrium patens HOM05D006923 ORTHO05D008697 6.0e-67 258.5 263 53.6
Zm00001eb068300 Zea mays HOM05D006923 ORTHO05D008697 2.5e-65 253.1 242 52.9
Ciclev10032274m.g Citrus clementina HOM05D006923 ORTHO05D008697 5.7e-65 251.9 236 55.1
BcaB04g20234 Brassica carinata HOM05D006923 ORTHO05D008697 9.6e-65 251.1 225 54.7
THA.LOC104819679 Tarenaya hassleriana HOM05D006923 ORTHO05D008697 1.6e-64 250.4 225 56.4
Sp2g04730 Schrenkiella parvula HOM05D006923 ORTHO05D008697 2.1e-64 250.0 225 54.2
Cpa.g.sc5.315 Carica papaya HOM05D006923 ORTHO05D008697 2.8e-64 249.6 225 56.0
Os04g0650500 Oryza sativa ssp. japonica HOM05D006923 ORTHO05D008697 6.3e-64 248.4 234 53.8
Thhalv10023990m.g Eutrema salsugineum HOM05D006923 ORTHO05D008697 1.1e-63 247.7 225 54.7
Gohir.A05G320000 Gossypium hirsutum HOM05D006923 ORTHO05D008697 1.1e-63 247.7 235 54.9
Aa31LG2G10350 Aethionema arabicum HOM05D006923 ORTHO05D008697 1.4e-63 247.3 225 53.8
AT1G59840 Arabidopsis thaliana HOM05D006923 ORTHO05D008697 2.4e-63 246.5 225 53.8
Gorai.009G345900 Gossypium raimondii HOM05D006923 ORTHO05D008697 2.4e-63 246.5 235 54.5
Sopen04g001110 Solanum pennellii HOM05D006923 ORTHO05D008697 2.4e-63 246.5 237 54.9
Migut.L01372 Erythranthe guttata HOM05D006923 ORTHO05D008697 6.9e-63 245.0 230 54.3
Carub.0002s0542 Capsella rubella HOM05D006923 ORTHO05D008697 9.0e-63 244.6 225 53.3
COL.COLO4_36266 Corchorus olitorius HOM05D006923 ORTHO05D008697 1.2e-62 244.2 235 53.6
PGR102G0681 Punica granatum HOM05D006923 ORTHO05D008697 1.2e-62 244.2 233 54.5
Atru.chr11.1922 Acer truncatum HOM05D006923 ORTHO05D008697 1.5e-62 243.8 226 55.8
Gohir.D05G322300 Gossypium hirsutum HOM05D006923 ORTHO05D008697 2.0e-62 243.4 235 54.0
Nn4g22963 Nelumbo nucifera HOM05D006923 ORTHO05D008697 2.6e-62 243.0 227 55.5
PGSC0003DMG400001928 Solanum tuberosum HOM05D006923 ORTHO05D008697 2.6e-62 243.0 231 54.5
Thecc.02G238100 Theobroma cacao HOM05D006923 ORTHO05D008697 4.5e-62 242.3 242 53.7
AL2G16930 Arabidopsis lyrata HOM05D006923 ORTHO05D008697 5.9e-62 241.9 225 52.9
Manes.05G093700 Manihot esculenta HOM05D006923 ORTHO05D008697 7.6e-62 241.5 225 56.4
Cfa009080 Carpinus fangiana HOM05D006923 ORTHO05D008697 1.3e-61 240.7 227 54.6
Solyc04g005090.4 Solanum lycopersicum HOM05D006923 ORTHO05D008697 1.3e-61 240.7 231 54.5
CiPaw.06G077400 Carya illinoinensis HOM05D006923 ORTHO05D008697 2.9e-61 239.6 252 52.0
Sed0028145 Sechium edule HOM05D006923 ORTHO05D008697 2.9e-61 239.6 236 54.2
ClCG05G024880 Citrullus lanatus HOM05D006923 ORTHO05D008697 3.8e-61 239.2 232 54.3
unitig_26.g10329 Utricularia gibba HOM05D006923 ORTHO05D008697 3.8e-61 239.2 227 54.6
C01p36540 Brassica napus HOM05D006923 ORTHO05D008697 5.0e-61 238.8 231 51.9
BolC1t03615H Brassica oleracea HOM05D006923 ORTHO05D008697 8.5e-61 238.0 231 51.9
TAR629G1985 Trochodendron aralioides HOM05D006923 ORTHO05D008697 8.5e-61 238.0 227 54.6
QL03p067501 Quercus lobata HOM05D006923 ORTHO05D008697 1.9e-60 236.9 233 53.6
Ca_05074_v3 Cicer arietinum L. HOM05D006923 ORTHO05D008697 2.5e-60 236.5 235 52.3
FAN07G0582 Fragaria x ananassa HOM05D006923 ORTHO05D008697 2.5e-60 236.5 226 54.4
Aa31LG1G14870 Aethionema arabicum HOM05D006923 ORTHO05D008697 3.2e-60 236.1 233 51.9
Lj2g0018338 Lotus japonicus HOM05D006923 ORTHO05D008697 3.2e-60 236.1 233 51.5
FvH4_4g35320 Fragaria vesca HOM05D006923 ORTHO05D008697 4.2e-60 235.7 226 53.5
FAN12G2795 Fragaria x ananassa HOM05D006923 ORTHO05D008697 4.2e-60 235.7 226 53.5
CAN.G25.5 Capsicum annuum HOM05D006923 ORTHO05D008697 5.5e-60 235.3 231 53.2
GSVIVG01020133001 Vitis vinifera HOM05D006923 ORTHO05D008697 5.5e-60 235.3 233 52.8
AUR62039449 Chenopodium quinoa HOM05D006923 ORTHO05D008697 7.2e-60 235.0 229 52.4
Dinv31139 Davidia involucrata HOM05D006923 ORTHO05D008697 7.2e-60 235.0 227 54.6
FAN22G1061 Fragaria x ananassa HOM05D006923 ORTHO05D008697 7.2e-60 235.0 226 54.4
Peaxi162Scf00266g00035 Petunia axillaris HOM05D006923 ORTHO05D008697 7.2e-60 235.0 231 52.4
TPR.G26715 Trifolium pratense HOM05D006923 ORTHO05D008697 9.3e-60 234.6 233 51.5
HPP92_026426 Vanilla planifolia HOM05D006923 ORTHO05D008697 9.3e-60 234.6 238 51.3
BcaC09g49455 Brassica carinata HOM05D006923 ORTHO05D008697 1.2e-59 234.2 241 49.8
Phvul.002G078400 Phaseolus vulgaris HOM05D006923 ORTHO05D008697 1.2e-59 234.2 233 51.9
SGA_v2.0_scaffold166G38306 Striga asiatica HOM05D006923 ORTHO05D008697 1.2e-59 234.2 227 52.4
MSTRG.649 Avicennia marina HOM05D006923 ORTHO05D008697 1.6e-59 233.8 227 53.3
PSO591G0274 Papaver somniferum HOM05D006923 ORTHO05D008697 1.6e-59 233.8 233 52.8
Potri.008G191900 Populus trichocarpa HOM05D006923 ORTHO05D008697 2.1e-59 233.4 232 53.9
Actinidia24653 Actinidia chinensis HOM05D006923 ORTHO05D008697 4.6e-59 232.3 228 54.8
CDE04G0355 Ceratophyllum demersum HOM05D006923 ORTHO05D008697 4.6e-59 232.3 227 51.1
ATR0624G013 Amborella trichopoda HOM05D006923 ORTHO05D008697 6.1e-59 231.9 218 52.8
BcaC06g31796 Brassica carinata HOM05D006923 ORTHO05D008697 6.1e-59 231.9 211 54.5
BcaNung06340 Brassica carinata HOM05D006923 ORTHO05D008697 6.1e-59 231.9 211 54.5
Cc11_g13930 Coffea canephora HOM05D006923 ORTHO05D008697 7.9e-59 231.5 226 51.8
ECA246G0266 Erigeron canadensis HOM05D000793 ORTHO05D000783 7.9e-59 231.5 236 50.8
HanXRQChr09g0267151 Helianthus annuus HOM05D006923 ORTHO05D008697 7.9e-59 231.5 228 52.2
CBR_g3926 Chara braunii HOM05D006923 ORTHO05D008697 1.3e-58 230.7 238 48.7
Psat2g114680 Pisum sativum HOM05D006923 ORTHO05D008697 1.3e-58 230.7 251 49.8
MD13G1084200 Malus domestica HOM05D006923 ORTHO05D008697 1.8e-58 230.3 227 52.0
Aqoxy3G03167 Aquilegia oxysepala HOM05D006923 ORTHO05D008697 3.0e-58 229.6 227 54.6
Glyma.02G026400 Glycine max HOM05D006923 ORTHO05D008697 3.9e-58 229.2 227 52.0
CSS0003222 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 6.7e-58 228.4 228 53.1
CSS0013336 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 6.7e-58 228.4 228 53.1
Rhsim12G0127000 Rhododendron simsii HOM05D006923 ORTHO05D008697 8.7e-58 228.0 228 52.2
RcHm_v2.0_Chr4g0444951 Rosa chinensis HOM05D006923 ORTHO05D008697 1.1e-57 227.6 227 52.9
Lalb_Chr16g0382621 Lupinus albus HOM05D006923 ORTHO05D008697 1.5e-57 227.3 226 52.7
SalBow2G1484 Salvia bowleyana HOM05D006923 ORTHO05D008697 1.9e-57 226.9 235 51.1
SalBow2G2758 Salvia bowleyana HOM05D006923 ORTHO05D008697 1.9e-57 226.9 235 51.1
Lj6C798T8 Lonicera japonica HOM05D006923 ORTHO05D008697 4.3e-57 225.7 236 50.8
arahy.Tifrunner.gnm1.ann1.EW3DBQ Arachis hypogaea HOM05D006923 ORTHO05D008697 2.2e-56 223.4 233 50.6
EL10Ac6g13089 Beta vulgaris HOM05D006923 ORTHO05D008697 2.8e-56 223.0 243 48.6
A01p28870 Brassica napus HOM05D006923 ORTHO05D008697 1.1e-55 221.1 211 52.6
BraA01t03022Z Brassica rapa HOM05D006923 ORTHO05D008697 3.1e-55 219.5 211 52.6
CsaV3_5G032010 Cucumis sativus L. HOM05D006923 ORTHO05D008697 3.1e-55 219.5 215 55.3
Hund25304 Selenicereus undatus HOM05D006923 ORTHO05D008697 5.3e-55 218.8 235 48.9
Sabra08G0145400 Salix brachista HOM05D006923 ORTHO05D008697 5.9e-54 215.3 220 53.2
vmacro16302 Vaccinium macrocarpon HOM05D006923 ORTHO05D008697 7.7e-54 214.9 226 51.8
arahy.Tifrunner.gnm1.ann1.NUE0XS Arachis hypogaea HOM05D006923 ORTHO05D008697 1.3e-53 214.2 218 50.9
Prupe.1G262600 Prunus persica HOM05D006923 ORTHO05D008697 3.8e-53 212.6 212 52.8
CANSAT01G2170 Cannabis sativa HOM05D006923 ORTHO05D008697 1.4e-52 210.7 233 50.6
Sc11g0001490 Simmondsia chinensis HOM05D006923 ORTHO05D008697 7.2e-52 208.4 212 50.9
Nitab4.5_0005168g0020 Nicotiana tabacum HOM05D006923 ORTHO05D008697 1.6e-51 207.2 226 50.4
CARHR053250 Cardamine hirsuta HOM05D006923 ORTHO05D008697 1.5e-49 200.7 183 53.0
Haze_12112 Corylus avellana HOM05D006923 ORTHO05D008697 2.2e-48 196.8 187 55.1
Lsat_1_v5_gn_7_91800 Lactuca sativa HOM05D006923 ORTHO05D008697 1.1e-47 194.5 199 50.8
AUR62026532 Chenopodium quinoa HOM05D006923 ORTHO05D008697 2.9e-45 186.4 183 54.1
TWI18G0575 Tripterygium wilfordii HOM05D006923 ORTHO05D008697 1.4e-44 184.1 231 45.9
Medtr5g037050 Medicago truncatula HOM05D006923 ORTHO05D008697 7.2e-44 181.8 209 46.9
VMungo1215G1603 Vigna mungo HOM05D006923 ORTHO05D008697 2.3e-42 176.8 194 49.0
MELO3C012038.2 Cucumis melo HOM05D006923 ORTHO05D008697 3.9e-42 176.0 198 51.5
MCO16G195 Micromonas commoda HOM05D006923 ORTHO05D008697 4.8e-40 169.1 240 40.0
Cre08.g382300 Chlamydomonas reinhardtii HOM05D006923 ORTHO05D008697 7.0e-39 165.2 237 37.6
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 1.9e-36 157.1 253 37.5
Duzib268G0289 Durio zibethinus HOM05D006923 ORTHO05D008697 5.5e-36 155.6 226 40.7
FAN17G2763 Fragaria x ananassa HOM05D006923 ORTHO05D008697 2.0e-33 147.1 202 45.0
MBI17_g35870_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 8.2e-32 141.7 124 55.6
AagrBONN_evm.TU.Sc2ySwM_117.4092 Anthoceros agrestis HOM05D006923 ORTHO05D008697 5.7e-25 119.0 129 49.6
PSO832G3782 Papaver somniferum HOM05D006923 ORTHO05D008697 3.2e-20 103.2 87 55.2
Nitab4.5_0001908g0040 Nicotiana tabacum HOM05D006923 ORTHO05D008697 1.7e-16 90.9 187 34.2
Sed0022420 Sechium edule HOM05D006923 ORTHO05D008697 4.9e-16 89.4 111 42.3
SEGI_22816 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 1.3e-13 81.3 84 50.0
VMungo1215G3051 Vigna mungo HOM05D006923 ORTHO05D008697 4.1e-07 59.7 41 63.4


User provided reference genes

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