Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0215 Marchantia polymorpha HOM05D006618 ORTHO05D008291 6.4e-88 327.8 220 100.0
Pp3c9_10530 Physcomitrium patens HOM05D006618 ORTHO05D008291 2.3e-16 90.1 222 46.8
PGR119G1443 Punica granatum HOM05D006618 ORTHO05D008291 2.8e-14 83.2 205 41.5
AagrBONN_evm.TU.Sc2ySwM_117.1999 Anthoceros agrestis HOM05D006618 ORTHO05D008291 3.1e-13 79.7 54 68.5
PGSC0003DMG400024043 Solanum tuberosum HOM05D006618 ORTHO05D008291 4.0e-13 79.3 198 35.9
Phvul.001G202800 Phaseolus vulgaris HOM05D006618 ORTHO05D008291 8.9e-13 78.2 190 34.7
Solyc06g084500.3 Solanum lycopersicum HOM05D006618 ORTHO05D008291 1.2e-12 77.8 193 33.7
VMungo1383G0445 Vigna mungo HOM05D006618 ORTHO05D008291 2.6e-12 76.6 203 33.0
Hma1.2p1_0399F.1_g144140 Hydrangea macrophylla HOM05D006618 ORTHO05D008291 5.8e-12 75.5 214 36.0
PSO210G2131 Papaver somniferum HOM05D006618 ORTHO05D008291 2.2e-11 73.6 196 33.2
Glyma.19G206900 Glycine max HOM05D006618 ORTHO05D008291 2.9e-11 73.2 207 32.9
Peaxi162Scf01039g00026 Petunia axillaris HOM05D006618 ORTHO05D008291 2.9e-11 73.2 204 33.8
CAN.G1209.34 Capsicum annuum HOM05D006618 ORTHO05D008291 3.7e-11 72.8 214 36.9
PSO170G6580 Papaver somniferum HOM05D006618 ORTHO05D008291 4.9e-11 72.4 196 33.2
Hund18083 Selenicereus undatus HOM05D006618 ORTHO05D008291 4.9e-11 72.4 217 32.7
CSS0038517 Camellia sinensis var. sinensis HOM05D006618 ORTHO05D008291 6.4e-11 72.0 224 35.7
Sopen06g035880 Solanum pennellii HOM05D006618 ORTHO05D008291 6.4e-11 72.0 195 33.3
Ah.08g212660 Amaranthus hybridus HOM05D006618 ORTHO05D008291 8.3e-11 71.6 202 39.1
EL10Ac7g17390 Beta vulgaris HOM05D006618 ORTHO05D008291 8.3e-11 71.6 198 31.3
CsaV3_7G028720 Cucumis sativus L. HOM05D006618 ORTHO05D008291 8.3e-11 71.6 187 42.2
HanXRQChr15g0466141 Helianthus annuus HOM05D006618 ORTHO05D008291 8.3e-11 71.6 219 40.6
Sed0009421 Sechium edule HOM05D006618 ORTHO05D008291 8.3e-11 71.6 202 31.7
Sc17g0003540 Simmondsia chinensis HOM05D006618 ORTHO05D008291 1.1e-10 71.2 196 32.1
THA.LOC104801197 Tarenaya hassleriana HOM05D006618 ORTHO05D008291 1.4e-10 70.9 222 34.7
MELO3C015900.2 Cucumis melo HOM05D006618 ORTHO05D008291 1.9e-10 70.5 187 38.5
Thhalv10028994m.g Eutrema salsugineum HOM05D006618 ORTHO05D008291 1.9e-10 70.5 195 30.3
MSTRG.18188 Avicennia marina HOM05D006618 ORTHO05D008291 3.2e-10 69.7 217 31.8
Manes.05G067500 Manihot esculenta HOM05D006618 ORTHO05D008291 3.2e-10 69.7 187 39.6
Atru.chr5.1237 Acer truncatum HOM05D006618 ORTHO05D008291 4.1e-10 69.3 193 32.1
AUR62036645 Chenopodium quinoa HOM05D006618 ORTHO05D008291 5.4e-10 68.9 223 38.1
Glyma.03G209500 Glycine max HOM05D006618 ORTHO05D008291 5.4e-10 68.9 210 33.8
Nitab4.5_0012299g0010 Nicotiana tabacum HOM05D006618 ORTHO05D008291 5.4e-10 68.9 201 33.8
ClCG09G006430 Citrullus lanatus HOM05D006618 ORTHO05D008291 9.2e-10 68.2 207 38.6
Sed0008392 Sechium edule HOM05D006618 ORTHO05D008291 1.6e-09 67.4 187 36.4
Psat3g024440 Pisum sativum HOM05D006618 ORTHO05D008291 2.0e-09 67.0 206 39.3
Medtr7g108100 Medicago truncatula HOM05D006618 ORTHO05D008291 2.7e-09 66.6 199 37.2
SEGI_31360 Sequoiadendron giganteum HOM05D006618 ORTHO05D008291 3.5e-09 66.2 87 47.1
BcaB05g23692 Brassica carinata HOM05D006618 ORTHO05D008291 6.0e-09 65.5 193 30.6
CiPaw.08G099900 Carya illinoinensis HOM05D006618 ORTHO05D008291 6.0e-09 65.5 222 35.1
Duzib211G0091 Durio zibethinus HOM05D006618 ORTHO05D008291 7.8e-09 65.1 223 35.4
Lsat_1_v5_gn_9_4841 Lactuca sativa HOM05D006618 ORTHO05D008291 1.0e-08 64.7 222 32.4
Ca_23188_v3 Cicer arietinum L. HOM05D006618 ORTHO05D008291 1.3e-08 64.3 193 41.5
Nitab4.5_0002093g0230 Nicotiana tabacum HOM05D006618 ORTHO05D008291 1.3e-08 64.3 212 31.6
QL12p024238 Quercus lobata HOM05D006618 ORTHO05D008291 1.3e-08 64.3 182 33.0
Aqoxy5G00606 Aquilegia oxysepala HOM05D006618 ORTHO05D008291 2.3e-08 63.5 196 32.7
COL.COLO4_08018 Corchorus olitorius HOM05D006618 ORTHO05D008291 2.3e-08 63.5 218 31.2
Duzib138G1186 Durio zibethinus HOM05D006618 ORTHO05D008291 2.3e-08 63.5 221 34.8
SalBow3G3170 Salvia bowleyana HOM05D006618 ORTHO05D008291 2.3e-08 63.5 201 37.3
SGA_v2.0_scaffold11G05756 Striga asiatica HOM05D006618 ORTHO05D008291 2.3e-08 63.5 223 38.6
TWI12G0445 Tripterygium wilfordii HOM05D006618 ORTHO05D008291 3.9e-08 62.8 192 35.9
BcaC01g06702 Brassica carinata HOM05D006618 ORTHO05D008291 5.0e-08 62.4 196 30.1
Carub.0006s3388 Capsella rubella HOM05D006618 ORTHO05D008291 5.0e-08 62.4 195 27.2
ECA247G1808 Erigeron canadensis HOM05D006618 ORTHO05D008291 5.0e-08 62.4 215 35.8
Potri.014G134700 Populus trichocarpa HOM05D006618 ORTHO05D008291 5.0e-08 62.4 213 29.6
Dinv33000 Davidia involucrata HOM05D006618 ORTHO05D008291 6.6e-08 62.0 196 32.7
Aa31LG5G2680 Aethionema arabicum HOM05D006618 ORTHO05D008291 8.6e-08 61.6 197 29.9
AL6G49760 Arabidopsis lyrata HOM05D006618 ORTHO05D008291 8.6e-08 61.6 215 29.8
C03p37140 Brassica napus HOM05D006618 ORTHO05D008291 8.6e-08 61.6 195 29.7
MD11G1299100 Malus domestica HOM05D006618 ORTHO05D008291 8.6e-08 61.6 248 26.6
BolC3t16012H Brassica oleracea HOM05D006618 ORTHO05D008291 1.1e-07 61.2 194 28.9
CARHR251610 Cardamine hirsuta HOM05D006618 ORTHO05D008291 1.1e-07 61.2 201 29.4
Lalb_Chr18g0047451 Lupinus albus HOM05D006618 ORTHO05D008291 1.1e-07 61.2 188 30.9
AT4G03180 Arabidopsis thaliana HOM05D006618 ORTHO05D008291 1.5e-07 60.8 195 27.7
Eucgr.H01207 Eucalyptus grandis HOM05D006618 ORTHO05D008291 1.5e-07 60.8 189 34.4
Sp6g03210 Schrenkiella parvula HOM05D006618 ORTHO05D008291 1.9e-07 60.5 202 29.7
Atru.chr5.1270 Acer truncatum HOM05D006618 ORTHO05D008291 2.5e-07 60.1 69 52.2
Cfa006056 Carpinus fangiana HOM05D006618 ORTHO05D008291 3.3e-07 59.7 219 27.4
Nn3g21320 Nelumbo nucifera HOM05D006618 ORTHO05D008291 3.3e-07 59.7 183 32.2
TAR362G0318 Trochodendron aralioides HOM05D006618 ORTHO05D008291 3.3e-07 59.7 195 31.3
Gorai.007G131200 Gossypium raimondii HOM05D006618 ORTHO05D008291 5.6e-07 58.9 178 32.6
TPR.G32314 Trifolium pratense HOM05D006618 ORTHO05D008291 5.6e-07 58.9 220 37.7
Sabra14G0100400 Salix brachista HOM05D006618 ORTHO05D008291 9.5e-07 58.2 213 36.6
Lj1g0015584 Lotus japonicus HOM05D006618 ORTHO05D008291 1.6e-06 57.4 205 29.3
MD03G1276600 Malus domestica HOM05D006618 ORTHO05D008291 1.6e-06 57.4 213 27.7
CBR_g54965 Chara braunii HOM05D006618 ORTHO05D008291 2.1e-06 57.0 65 46.2
Lj1C37G5 Lonicera japonica HOM05D000143 ORTHO05D000072 2.1e-06 57.0 188 31.9
Prupe.8G253400 Prunus persica HOM05D006618 ORTHO05D008291 2.1e-06 57.0 218 27.5
BcaC03g16213 Brassica carinata HOM05D006618 ORTHO05D008291 3.6e-06 56.2 189 41.3
BolC2t10017H Brassica oleracea HOM05D006618 ORTHO05D008291 3.6e-06 56.2 189 41.3
Gohir.A11G117500 Gossypium hirsutum HOM05D006618 ORTHO05D008291 4.7e-06 55.8 213 33.3
ATR0706G074 Amborella trichopoda HOM05D006618 ORTHO05D008291 8.1e-06 55.1 194 30.9
GSVIVG01010994001 Vitis vinifera HOM05D006618 ORTHO05D008291 8.1e-06 55.1 133 35.3


User provided reference genes

Program Settings