Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0213 Marchantia polymorpha HOM05D003593 ORTHO05D004064 5.9e-122 441.0 247 100.0
SMO288G0003 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 1.6e-34 150.6 247 38.1
MBI14_g31143_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 2.7e-34 149.8 252 40.5
ATR0580G077 Amborella trichopoda HOM05D003593 ORTHO05D004064 1.7e-33 147.1 249 37.3
SMO352G0089 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 1.1e-32 144.4 245 36.3
arahy.Tifrunner.gnm1.ann1.HDC0J8 Arachis hypogaea HOM05D003593 ORTHO05D004064 4.3e-32 142.5 251 37.8
arahy.Tifrunner.gnm1.ann1.PB4QPE Arachis hypogaea HOM05D003593 ORTHO05D004064 4.3e-32 142.5 251 37.8
MBI16_g31002_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 7.3e-32 141.7 237 40.1
C08p30910 Brassica napus HOM05D003593 ORTHO05D004064 1.6e-31 140.6 253 36.8
C08p30920 Brassica napus HOM05D003593 ORTHO05D004064 1.6e-31 140.6 258 36.4
BcaC07g39887 Brassica carinata HOM05D002600 ORTHO05D003013 8.1e-31 138.3 258 36.8
VMungo1215G1259 Vigna mungo HOM05D003593 ORTHO05D004064 1.1e-30 137.9 252 37.7
BolC8t50717H Brassica oleracea HOM05D003593 ORTHO05D004064 1.4e-30 137.5 253 36.8
Rhsim01G0049400 Rhododendron simsii HOM05D003593 ORTHO05D004064 1.4e-30 137.5 252 37.7
Phvul.003G138700 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 1.8e-30 137.1 252 36.9
SalBow4G0244 Salvia bowleyana HOM05D003593 ORTHO05D004064 2.4e-30 136.7 245 37.1
Nn8g40907 Nelumbo nucifera HOM05D003593 ORTHO05D004064 3.1e-30 136.3 251 36.7
Phvul.003G138826 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 3.1e-30 136.3 252 36.9
Phvul.003G139226 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 3.1e-30 136.3 252 36.9
Aqoxy5G00845 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 4.0e-30 136.0 252 37.3
Gohir.A10G111600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 4.0e-30 136.0 252 36.5
PGR142G0083 Punica granatum HOM05D003593 ORTHO05D004064 4.0e-30 136.0 252 37.3
Medtr8g027710 Medicago truncatula HOM05D003593 ORTHO05D004064 5.3e-30 135.6 252 36.9
Prupe.1G071200 Prunus persica HOM05D003593 ORTHO05D004064 5.3e-30 135.6 251 36.3
TPR.G5405 Trifolium pratense HOM05D003593 ORTHO05D004064 5.3e-30 135.6 252 36.5
A09p48590 Brassica napus HOM05D003593 ORTHO05D004064 6.9e-30 135.2 249 35.7
BraA09t40311Z Brassica rapa HOM05D003593 ORTHO05D004064 6.9e-30 135.2 249 35.7
CiPaw.07G199700 Carya illinoinensis HOM05D003593 ORTHO05D004064 9.0e-30 134.8 253 37.9
GSVIVG01029263001 Vitis vinifera HOM05D003593 ORTHO05D004064 1.2e-29 134.4 252 36.9
QL03p003697 Quercus lobata HOM05D003593 ORTHO05D004064 1.5e-29 134.0 253 36.0
Glyma.13G102300 Glycine max HOM05D003593 ORTHO05D004064 2.0e-29 133.7 253 36.4
THA.LOC104810051 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 2.0e-29 133.7 251 35.5
Medtr4g126960 Medicago truncatula HOM05D003593 ORTHO05D004064 2.6e-29 133.3 252 36.1
Sp5g06880 Schrenkiella parvula HOM05D003593 ORTHO05D004064 3.4e-29 132.9 252 34.9
THA.LOC104810053 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 3.4e-29 132.9 251 36.3
Gohir.D10G156600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 4.5e-29 132.5 252 36.1
Gorai.011G174800 Gossypium raimondii HOM05D003593 ORTHO05D004064 4.5e-29 132.5 252 36.1
TPR.G16420 Trifolium pratense HOM05D003593 ORTHO05D004064 4.5e-29 132.5 253 35.6
Cc07_g18270 Coffea canephora HOM05D003593 ORTHO05D004064 5.8e-29 132.1 251 35.5
Migut.D00405 Erythranthe guttata HOM05D003593 ORTHO05D004064 5.8e-29 132.1 251 35.1
GSVIVG01033604001 Vitis vinifera HOM05D003593 ORTHO05D004064 5.8e-29 132.1 252 37.7
PSO063G1703 Papaver somniferum HOM05D003593 ORTHO05D004064 7.6e-29 131.7 251 35.9
Ca_21268_v3 Cicer arietinum L. HOM05D003593 ORTHO05D004064 9.9e-29 131.3 252 35.3
Prupe.2G148000 Prunus persica HOM05D003593 ORTHO05D004064 9.9e-29 131.3 252 35.3
AL5G36800 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.3e-28 131.0 252 37.7
ECA236G3417 Erigeron canadensis HOM05D003593 ORTHO05D004064 1.7e-28 130.6 252 33.7
Eucgr.F03860 Eucalyptus grandis HOM05D003593 ORTHO05D004064 1.7e-28 130.6 253 37.2
Glyma.17G056700 Glycine max HOM05D003593 ORTHO05D004064 1.7e-28 130.6 253 36.0
RcHm_v2.0_Chr6g0268981 Rosa chinensis HOM05D003593 ORTHO05D004064 1.7e-28 130.6 252 35.3
CAN.G675.9 Capsicum annuum HOM05D003593 ORTHO05D004064 2.2e-28 130.2 255 34.5
FvH4_2g10880 Fragaria vesca HOM05D003593 ORTHO05D004064 2.2e-28 130.2 252 36.1
CAN.G1497.5 Capsicum annuum HOM05D003593 ORTHO05D004064 2.9e-28 129.8 254 35.0
Ciclev10032601m.g Citrus clementina HOM05D003593 ORTHO05D004064 2.9e-28 129.8 252 34.5
Glyma.14G032100 Glycine max HOM05D003593 ORTHO05D004064 2.9e-28 129.8 252 36.1
Lj4g0003900 Lotus japonicus HOM05D003593 ORTHO05D004064 2.9e-28 129.8 255 36.1
TWI39G0804 Tripterygium wilfordii HOM05D003593 ORTHO05D004064 2.9e-28 129.8 256 34.8
Actinidia21188 Actinidia chinensis HOM05D003593 ORTHO05D004064 3.8e-28 129.4 253 34.8
Rhsim01G0266500 Rhododendron simsii HOM05D003593 ORTHO05D004064 3.8e-28 129.4 252 36.1
AT3G55600 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 6.4e-28 128.6 251 35.9
CANSAT01G0027 Cannabis sativa HOM05D003593 ORTHO05D004064 6.4e-28 128.6 254 35.0
CiPaw.08G030900 Carya illinoinensis HOM05D003593 ORTHO05D004064 6.4e-28 128.6 260 36.2
Lj1C63T22 Lonicera japonica HOM05D003593 ORTHO05D004064 6.4e-28 128.6 251 35.9
Sp1g35080 Schrenkiella parvula HOM05D003593 ORTHO05D004064 6.4e-28 128.6 248 33.5
PSO782G1623 Papaver somniferum HOM05D003593 ORTHO05D004064 8.4e-28 128.3 251 35.5
Cpa.g.sc103.74 Carica papaya HOM05D003593 ORTHO05D004064 1.4e-27 127.5 259 35.1
Ciclev10021956m.g Citrus clementina HOM05D003593 ORTHO05D004064 1.4e-27 127.5 252 33.7
Thecc.09G252700 Theobroma cacao HOM05D003593 ORTHO05D004064 1.4e-27 127.5 252 36.5
Thhalv10010672m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 1.9e-27 127.1 251 33.9
Lsat_1_v5_gn_9_9120 Lactuca sativa HOM05D003593 ORTHO05D004064 1.9e-27 127.1 258 33.7
Nitab4.5_0010661g0020 Nicotiana tabacum HOM05D003593 ORTHO05D004064 1.9e-27 127.1 254 34.3
Pp3c17_5110 Physcomitrium patens HOM05D003593 ORTHO05D004064 1.9e-27 127.1 272 34.6
GSVIVG01025934001 Vitis vinifera HOM05D003593 ORTHO05D004064 1.9e-27 127.1 252 36.9
ClCG06G013760 Citrullus lanatus HOM05D003593 ORTHO05D004064 2.4e-27 126.7 260 35.4
Dinv34117 Davidia involucrata HOM05D003593 ORTHO05D004064 2.4e-27 126.7 254 35.4
Thhalv10011761m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 2.4e-27 126.7 229 34.5
MD13G1238800 Malus domestica HOM05D003593 ORTHO05D004064 2.4e-27 126.7 252 34.5
Sabra18G0113300 Salix brachista HOM05D003593 ORTHO05D004064 2.4e-27 126.7 252 33.7
CsaV3_3G012080 Cucumis sativus L. HOM05D003593 ORTHO05D004064 3.2e-27 126.3 260 33.8
FAN20G0230 Fragaria x ananassa HOM05D003593 ORTHO05D004064 4.2e-27 125.9 252 35.3
COL.COLO4_13717 Corchorus olitorius HOM05D003593 ORTHO05D004064 5.5e-27 125.6 252 34.5
FAN15G1423 Fragaria x ananassa HOM05D003593 ORTHO05D004064 5.5e-27 125.6 252 36.1
Potri.018G133700 Populus trichocarpa HOM05D003593 ORTHO05D004064 5.5e-27 125.6 252 34.5
HanXRQChr04g0113781 Helianthus annuus HOM05D003593 ORTHO05D004064 7.1e-27 125.2 253 32.8
Nitab4.5_0000630g0070 Nicotiana tabacum HOM05D003593 ORTHO05D004064 7.1e-27 125.2 254 34.6
RcHm_v2.0_Chr5g0056791 Rosa chinensis HOM05D003593 ORTHO05D004064 7.1e-27 125.2 252 35.3
AUR62035376 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.2e-26 124.4 252 34.1
FAN24G3005 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.2e-26 124.4 235 36.6
Hund02205 Selenicereus undatus HOM05D003593 ORTHO05D004064 1.2e-26 124.4 253 33.2
Carub.0003s3082 Capsella rubella HOM05D003593 ORTHO05D004064 2.1e-26 123.6 256 34.8
Duzib068G0242 Durio zibethinus HOM05D003593 ORTHO05D004064 2.1e-26 123.6 255 34.9
Solyc02g069380.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 2.1e-26 123.6 253 33.6
SGA_v2.0_scaffold10G05150 Striga asiatica HOM05D003593 ORTHO05D004064 2.1e-26 123.6 282 32.6
CSS0033341 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 3.5e-26 122.9 245 36.3
CSS0039493 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 3.5e-26 122.9 245 36.3
CARHR165650 Cardamine hirsuta HOM05D003593 ORTHO05D004064 3.5e-26 122.9 251 33.1
Sc03g0009620 Simmondsia chinensis HOM05D003593 ORTHO05D004064 3.5e-26 122.9 261 33.3
Peaxi162Scf00956g00310 Petunia axillaris HOM05D003593 ORTHO05D004064 6.0e-26 122.1 255 34.1
Lsat_1_v5_gn_8_91320 Lactuca sativa HOM05D003593 ORTHO05D004064 1.0e-25 121.3 242 33.1
Peaxi162Scf00195g00123 Petunia axillaris HOM05D003593 ORTHO05D004064 1.3e-25 120.9 253 34.0
QL02p059634 Quercus lobata HOM05D003593 ORTHO05D004064 1.3e-25 120.9 281 32.7
Oeu035605.1 Olea europaea HOM05D003593 ORTHO05D004064 1.8e-25 120.6 235 34.5
Atru.chr1.1670 Acer truncatum HOM05D003593 ORTHO05D004064 5.1e-25 119.0 280 33.2
MSTRG.21503 Avicennia marina HOM05D003593 ORTHO05D004064 5.1e-25 119.0 253 32.8
AT1G54110 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 8.7e-25 118.2 248 31.0
Cfa013477 Carpinus fangiana HOM05D003593 ORTHO05D004064 1.5e-24 117.5 251 33.5
MSTRG.18306 Avicennia marina HOM05D003593 ORTHO05D004064 2.5e-24 116.7 252 33.3
Zm00001eb252050 Zea mays HOM05D003593 ORTHO05D004064 2.5e-24 116.7 251 32.7
Os09g0272500 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 3.3e-24 116.3 251 32.7
Sopen02g013070 Solanum pennellii HOM05D003593 ORTHO05D004064 4.3e-24 115.9 237 35.4
Lalb_Chr12g0199721 Lupinus albus HOM05D003593 ORTHO05D004064 7.4e-24 115.2 252 33.3
AagrBONN_evm.TU.Sc2ySwM_368.144 Anthoceros agrestis HOM05D003593 ORTHO05D004064 1.6e-23 114.0 199 38.2
EL10Ac5g11509 Beta vulgaris HOM05D003593 ORTHO05D004064 2.1e-23 113.6 252 32.1
Os08g0533700 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 2.8e-23 113.2 252 33.3
PSO170G4544 Papaver somniferum HOM05D003593 ORTHO05D004064 4.8e-23 112.5 257 33.5
Zm00001eb036800 Zea mays HOM05D003593 ORTHO05D004064 4.8e-23 112.5 251 32.7
Peaxi162Scf00074g00739 Petunia axillaris HOM05D003593 ORTHO05D004064 1.1e-22 111.3 246 33.3
FvH4_6g47540 Fragaria vesca HOM05D003593 ORTHO05D004064 1.8e-22 110.5 252 33.3
Manes.16G049600 Manihot esculenta HOM05D003593 ORTHO05D004064 2.4e-22 110.2 253 35.6
CBR_g26495 Chara braunii HOM05D003593 ORTHO05D004064 9.0e-22 108.2 268 31.3
SEGI_30783 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 1.5e-21 107.5 208 33.7
unitig_22.g5286 Utricularia gibba HOM05D003593 ORTHO05D004064 2.6e-21 106.7 252 32.1
QL03p003406 Quercus lobata HOM05D003593 ORTHO05D004064 5.8e-21 105.5 316 28.8
FAN02G4054 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.3e-20 104.4 252 32.5
BcaB01g00076 Brassica carinata HOM05D003593 ORTHO05D004064 1.7e-20 104.0 224 33.0
FAN09G1792 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.7e-20 104.0 252 32.9
FAN09G2125 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.7e-20 104.0 252 32.9
Sed0017744 Sechium edule HOM05D003593 ORTHO05D004064 2.2e-20 103.6 252 33.3
Aa31LG5G19840 Aethionema arabicum HOM05D003593 ORTHO05D004064 4.9e-20 102.4 226 33.6
MD08G1104600 Malus domestica HOM05D003593 ORTHO05D004064 6.5e-20 102.1 292 30.5
FAN05G2468 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.1e-19 101.3 252 32.1
FAN09G2587 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.1e-19 101.3 252 32.5
Manes.15G093801 Manihot esculenta HOM05D003593 ORTHO05D004064 1.9e-19 100.5 258 31.4
Hma1.2p1_0571F.1_g180780 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 2.5e-19 100.1 250 31.2
Hma1.2p1_1219F.1_g267880 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 3.2e-19 99.8 242 31.8
HanXRQChr10g0281101 Helianthus annuus HOM05D003593 ORTHO05D004064 4.2e-19 99.4 229 32.3
AUR62029138 Chenopodium quinoa HOM05D003593 ORTHO05D004064 5.5e-19 99.0 214 33.6
AL1G62820 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 7.1e-19 98.6 193 35.2
CDE02G1962 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 1.2e-18 97.8 199 36.7
Psat1g089640 Pisum sativum HOM05D003593 ORTHO05D004064 1.2e-18 97.8 192 37.0
Psat2g189400 Pisum sativum HOM05D003593 ORTHO05D004064 1.6e-18 97.4 192 36.5
CDE06G1796 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 2.1e-18 97.1 220 32.7
Nitab4.5_0005797g0010 Nicotiana tabacum HOM05D003593 ORTHO05D004064 6.0e-18 95.5 256 30.5
AUR62015608 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.0e-17 94.7 220 30.9
FAN14G2581 Fragaria x ananassa HOM05D003593 ORTHO05D004064 3.0e-17 93.2 191 36.1
SEGI_34697 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 8.7e-17 91.7 141 37.6
Sopen02g018530 Solanum pennellii HOM05D003593 ORTHO05D004064 8.7e-17 91.7 225 30.2
DCAR_007335 Daucus carota HOM05D003593 ORTHO05D002993 1.1e-16 91.3 218 34.4
HPP92_006993 Vanilla planifolia HOM05D003593 ORTHO05D004064 2.5e-16 90.1 254 29.5
MELO3C006423.2 Cucumis melo HOM05D003593 ORTHO05D004064 7.4e-16 88.6 199 33.2
AUR62029320 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.3e-15 87.8 224 29.9
Sed0025908 Sechium edule HOM05D003593 ORTHO05D004064 1.3e-15 87.8 200 31.0
PSO170G1127 Papaver somniferum HOM05D003593 ORTHO05D004064 1.6e-15 87.4 179 37.4
vmacro03823 Vaccinium macrocarpon HOM05D003593 ORTHO05D004064 2.1e-15 87.0 338 26.3
AL6G40520 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 3.7e-15 86.3 196 28.6
Manes.03G101800 Manihot esculenta HOM05D003593 ORTHO05D004064 3.7e-15 86.3 227 31.7
CSS0006561 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.4e-14 84.3 256 30.5
AL1G48760 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 4.1e-14 82.8 196 28.1
CSS0041369 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 9.0e-14 81.6 192 32.8
CSS0019003 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.5e-13 80.9 180 32.8
CSS0014982 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.6e-13 80.1 118 39.0
Rhsim08G0153900 Rhododendron simsii HOM05D003593 ORTHO05D004064 3.2e-11 73.2 93 38.7
BcaC07g39889 Brassica carinata HOM05D003593 ORTHO05D004064 5.5e-11 72.4 170 34.7
Atru.chr10.1467 Acer truncatum HOM05D003593 ORTHO05D004064 1.0e-09 68.2 108 36.1
Thecc.10G141700 Theobroma cacao HOM05D003593 ORTHO05D004064 3.0e-09 66.6 157 31.8
Mapoly0058s0071 Marchantia polymorpha HOM05D003593 ORTHO05D004064 5.1e-09 65.9 366 23.2
MBI16_g09339_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 1.1e-08 64.7 95 36.8
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.6e-07 60.8 77 44.2
Lj2g0027873 Lotus japonicus HOM05D003593 ORTHO05D004064 1.6e-07 60.8 85 43.5
MCO03G348 Micromonas commoda HOM05D003593 ORTHO05D004064 1.6e-07 60.8 107 29.9
MBI16_g41745_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 6.3e-07 58.9 82 36.6
MD16G1244100 Malus domestica HOM05D003593 ORTHO05D004064 1.8e-06 57.4 154 30.5
Aqoxy5G03192 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 4.1e-06 56.2 128 33.6
C04p36780 Brassica napus HOM05D003593 ORTHO05D004064 4.1e-06 56.2 84 31.0
Os02g0306100 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 4.1e-06 56.2 124 36.3
Os08g0534350 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 5.3e-06 55.8 124 36.3
Os08g0535000 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 5.3e-06 55.8 124 36.3


User provided reference genes

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