Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0113 Marchantia polymorpha HOM05D004141 ORTHO05D005416 2.2e-271 938.3 462 100.0
Pp3c12_4340 Physcomitrium patens HOM05D004141 ORTHO05D005416 3.3e-150 535.8 405 66.9
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 3.3e-142 509.2 412 60.9
SEGI_24046 Sequoiadendron giganteum HOM05D004141 ORTHO05D005416 6.8e-140 501.5 396 63.1
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 5.8e-139 498.4 404 61.4
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 2.7e-136 489.6 395 61.3
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 8.6e-135 484.6 402 60.0
CANSAT78G1263 Cannabis sativa HOM05D004141 ORTHO05D005416 1.1e-134 484.2 396 60.1
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 1.5e-134 483.8 406 59.6
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 1.5e-134 483.8 395 60.8
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 1.5e-134 483.8 395 60.8
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 1.5e-134 483.8 395 60.8
CANSAT78G2476 Cannabis sativa HOM05D004141 ORTHO05D005416 1.5e-134 483.8 396 60.1
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 1.9e-134 483.4 393 61.1
Eucgr.F01245 Eucalyptus grandis HOM05D004141 ORTHO05D005416 1.9e-134 483.4 399 60.2
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 2.5e-134 483.0 402 59.7
Ah.16g104680 Amaranthus hybridus HOM05D004141 ORTHO05D005416 3.3e-134 482.6 395 61.3
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 4.3e-134 482.3 395 60.5
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 4.3e-134 482.3 396 60.1
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 4.3e-134 482.3 396 60.1
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 2.1e-133 479.9 392 59.9
Solyc06g082490.4 Solanum lycopersicum HOM05D004141 ORTHO05D005416 2.1e-133 479.9 395 60.3
Sopen06g033870 Solanum pennellii HOM05D004141 ORTHO05D005416 2.1e-133 479.9 395 60.3
PGSC0003DMG400030465 Solanum tuberosum HOM05D004141 ORTHO05D005416 2.1e-133 479.9 395 60.5
CsaV3_4G008070 Cucumis sativus L. HOM05D004141 ORTHO05D005416 2.8e-133 479.6 395 60.3
arahy.Tifrunner.gnm1.ann1.2ZZ8MX Arachis hypogaea HOM05D004141 ORTHO05D005416 6.2e-133 478.4 396 60.1
Dinv15000 Davidia involucrata HOM05D004141 ORTHO05D005416 6.2e-133 478.4 393 60.6
arahy.Tifrunner.gnm1.ann1.K2RFPE Arachis hypogaea HOM05D004141 ORTHO05D005416 1.1e-132 477.6 396 59.8
Oeu061361.2 Olea europaea HOM05D004141 ORTHO05D005416 1.1e-132 477.6 394 59.6
TAR627G0990 Trochodendron aralioides HOM05D004141 ORTHO05D005416 1.1e-132 477.6 413 58.4
Atru.chr2.2126 Acer truncatum HOM05D004141 ORTHO05D005416 1.4e-132 477.2 393 59.3
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 1.4e-132 477.2 396 59.3
Hma1.2p1_1016F.1_g248060 Hydrangea macrophylla HOM05D004141 ORTHO05D005416 1.4e-132 477.2 395 61.3
Actinidia18802 Actinidia chinensis HOM05D004141 ORTHO05D005416 1.8e-132 476.9 393 60.1
MBI14_g32936_MAGBIO Magnolia biondii HOM05D004141 ORTHO05D005416 1.8e-132 476.9 393 60.8
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 2.4e-132 476.5 395 59.5
Glyma.12G230400 Glycine max HOM05D004141 ORTHO05D005416 2.4e-132 476.5 396 58.6
Lalb_Chr25g0285811 Lupinus albus HOM05D004141 ORTHO05D005416 2.4e-132 476.5 393 59.3
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 3.1e-132 476.1 402 58.5
Aqoxy1G02012 Aquilegia oxysepala HOM05D004141 ORTHO05D005416 4.0e-132 475.7 395 60.5
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 4.0e-132 475.7 393 59.8
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 4.0e-132 475.7 402 58.7
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 4.0e-132 475.7 394 60.2
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 5.2e-132 475.3 396 60.1
Phvul.005G081600 Phaseolus vulgaris HOM05D004141 ORTHO05D005416 5.2e-132 475.3 396 58.1
CSS0023821 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 6.9e-132 474.9 395 59.5
SGA_v2.0_scaffold130G34289 Striga asiatica HOM05D004141 ORTHO05D005416 6.9e-132 474.9 396 59.6
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 8.9e-132 474.6 393 59.5
AUR62019583 Chenopodium quinoa HOM05D004141 ORTHO05D005416 8.9e-132 474.6 393 60.6
Prupe.4G241400 Prunus persica HOM05D004141 ORTHO05D005416 8.9e-132 474.6 396 59.1
RcHm_v2.0_Chr5g0030771 Rosa chinensis HOM05D004141 ORTHO05D005416 8.9e-132 474.6 396 59.3
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 1.2e-131 474.2 393 58.5
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 1.2e-131 474.2 396 58.6
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 1.5e-131 473.8 397 59.4
THA.LOC104812317 Tarenaya hassleriana HOM05D004141 ORTHO05D005416 1.5e-131 473.8 395 60.0
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 2.0e-131 473.4 395 60.5
CsaV3_7G010060 Cucumis sativus L. HOM05D004141 ORTHO05D005416 2.6e-131 473.0 394 59.6
FAN11G2786 Fragaria x ananassa HOM05D004141 ORTHO05D005416 2.6e-131 473.0 408 56.9
Nn7g36869 Nelumbo nucifera HOM05D004141 ORTHO05D005416 2.6e-131 473.0 398 59.0
VMungo1080G0359 Vigna mungo HOM05D004141 ORTHO05D005416 3.4e-131 472.6 396 58.3
Lj3g0016162 Lotus japonicus HOM05D004141 ORTHO05D005416 5.8e-131 471.9 396 57.8
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 5.8e-131 471.9 395 59.2
CiPaw.11G159700 Carya illinoinensis HOM05D004141 ORTHO05D005416 7.6e-131 471.5 412 58.0
Lj6g0002556 Lotus japonicus HOM05D004141 ORTHO05D005416 9.9e-131 471.1 396 57.8
SalBow7G1122 Salvia bowleyana HOM05D004141 ORTHO05D005416 9.9e-131 471.1 394 58.9
Sc03g0010560 Simmondsia chinensis HOM05D004141 ORTHO05D005416 9.9e-131 471.1 399 59.9
Ciclev10020399m.g Citrus clementina HOM05D004141 ORTHO05D005416 1.3e-130 470.7 395 59.0
vmacro09491 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 1.3e-130 470.7 393 59.3
TWI31G0451 Tripterygium wilfordii HOM05D004141 ORTHO05D005416 1.7e-130 470.3 395 58.7
FAN16G3678 Fragaria x ananassa HOM05D004141 ORTHO05D005416 2.2e-130 469.9 398 58.3
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 2.2e-130 469.9 397 58.9
FAN21G2932 Fragaria x ananassa HOM05D004141 ORTHO05D005416 2.9e-130 469.5 411 56.7
Nitab4.5_0000383g0110 Nicotiana tabacum HOM05D004141 ORTHO05D005416 3.8e-130 469.2 396 59.6
GSVIVG01014186001 Vitis vinifera HOM05D004141 ORTHO05D005416 4.9e-130 468.8 393 59.5
DCAR_030174 Daucus carota HOM05D004141 ORTHO05D005416 8.4e-130 468.0 393 58.3
Glyma.13G269200 Glycine max HOM05D004141 ORTHO05D005416 1.1e-129 467.6 414 56.5
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 1.1e-129 467.6 395 57.7
MELO3C016129.2 Cucumis melo HOM05D004141 ORTHO05D005416 2.4e-129 466.5 401 58.6
HanXRQChr04g0118321 Helianthus annuus HOM05D004141 ORTHO05D005416 2.4e-129 466.5 395 59.2
QL06p023676 Quercus lobata HOM05D004141 ORTHO05D005416 2.4e-129 466.5 395 58.0
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 3.2e-129 466.1 395 60.0
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 3.2e-129 466.1 395 60.0
Potri.011G109000 Populus trichocarpa HOM05D004141 ORTHO05D005416 4.2e-129 465.7 393 58.3
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 4.2e-129 465.7 395 59.0
MSTRG.11343 Avicennia marina HOM05D004141 ORTHO05D005416 7.1e-129 464.9 397 57.4
Peaxi162Scf00390g00331 Petunia axillaris HOM05D004141 ORTHO05D005416 7.1e-129 464.9 392 59.2
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 9.3e-129 464.5 397 58.4
HanXRQChr15g0495231 Helianthus annuus HOM05D004141 ORTHO05D005416 1.2e-128 464.2 393 59.3
MD11G1264500 Malus domestica HOM05D004141 ORTHO05D005416 1.2e-128 464.2 394 58.1
Prupe.5G052700 Prunus persica HOM05D004141 ORTHO05D005416 1.6e-128 463.8 396 58.1
Rhsim04G0026700 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.1e-128 463.4 426 55.9
Cfa017272 Carpinus fangiana HOM05D004141 ORTHO05D005416 2.7e-128 463.0 393 58.8
Atru.chr3.1550 Acer truncatum HOM05D004141 ORTHO05D005416 7.8e-128 461.5 437 54.2
Lj1C587G1 Lonicera japonica HOM05D004141 ORTHO05D005416 7.8e-128 461.5 395 57.7
Peaxi162Scf00111g01467 Petunia axillaris HOM05D004141 ORTHO05D005416 2.3e-127 459.9 395 59.0
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 6.6e-127 458.4 396 58.3
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 8.7e-127 458.0 432 54.6
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 1.5e-126 457.2 393 57.5
Sabra11G0096600 Salix brachista HOM05D004141 ORTHO05D005416 1.9e-126 456.8 418 55.5
ECA232G4285 Erigeron canadensis HOM05D004141 ORTHO05D005416 3.3e-126 456.1 396 57.8
unitig_72.g29740 Utricularia gibba HOM05D004141 ORTHO05D005416 4.3e-126 455.7 415 55.9
AUR62037553 Chenopodium quinoa HOM05D004141 ORTHO05D005416 2.8e-125 453.0 380 60.0
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 4.8e-125 452.2 407 57.2
Actinidia35211 Actinidia chinensis HOM05D004141 ORTHO05D005416 8.1e-125 451.4 369 61.2
HPP92_017867 Vanilla planifolia HOM05D004141 ORTHO05D005416 2.6e-123 446.4 394 56.9
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 4.5e-123 445.7 365 59.2
Rhsim02G0051200 Rhododendron simsii HOM05D004141 ORTHO05D005416 4.5e-123 445.7 391 57.8
EL10Ac4g08353 Beta vulgaris HOM05D004141 ORTHO05D005416 5.8e-123 445.3 483 50.1
ClCG07G010270 Citrullus lanatus HOM05D004141 ORTHO05D005416 1.3e-122 444.1 401 55.6
unitig_746.g26536 Utricularia gibba HOM05D004141 ORTHO05D005416 4.9e-122 442.2 381 57.7
Lsat_1_v5_gn_7_102521 Lactuca sativa HOM05D004141 ORTHO05D005416 2.3e-119 433.3 393 55.7
FAN25G0103 Fragaria x ananassa HOM05D004141 ORTHO05D005416 3.9e-119 432.6 395 53.9
Sed0017698 Sechium edule HOM05D004141 ORTHO05D005416 4.9e-114 415.6 428 52.1
ECA240G0250 Erigeron canadensis HOM05D004141 ORTHO05D005416 1.1e-110 404.4 358 56.4
Sed0020321 Sechium edule HOM05D004141 ORTHO05D005416 4.0e-108 396.0 341 58.9
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 9.0e-108 394.8 402 51.7
Manes.03G100400 Manihot esculenta HOM05D004141 ORTHO05D005416 9.0e-108 394.8 342 58.8
CSS0043357 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 5.5e-105 385.6 405 50.9
CSS0028209 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 1.3e-103 380.9 402 51.2
PRCOL_00006028 Prasinoderma coloniale HOM05D004141 ORTHO05D005416 5.7e-102 375.6 412 49.0
Oeu031026.1 Olea europaea HOM05D004141 ORTHO05D005416 3.7e-101 372.9 380 52.6
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 9.0e-100 368.2 409 48.9
Thhalv10019736m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 2.5e-94 350.1 393 46.6
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 3.3e-94 349.7 354 53.4
Cre02.g095147 Chlamydomonas reinhardtii HOM05D004141 ORTHO05D005416 2.2e-93 347.1 441 46.7
Dinv18368 Davidia involucrata HOM05D004141 ORTHO05D005416 2.8e-93 346.7 395 48.9
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 1.5e-91 340.9 302 57.3
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 1.7e-90 337.4 401 47.6
TPR.G5502 Trifolium pratense HOM05D004141 ORTHO05D005416 7.2e-89 332.0 256 62.1
Potri.001G393000 Populus trichocarpa HOM05D004141 ORTHO05D005416 1.7e-77 294.3 376 43.4
CBR_g988 Chara braunii HOM05D004141 ORTHO05D005416 2.8e-77 293.5 444 40.5
CARHR072350 Cardamine hirsuta HOM05D004141 ORTHO05D005416 7.0e-76 288.9 195 67.2
CAN.G874.81 Capsicum annuum HOM05D004141 ORTHO05D005416 9.1e-76 288.5 197 64.5
C03p92790 Brassica napus HOM05D004141 ORTHO05D005416 3.5e-75 286.6 198 66.2
Cfa025499 Carpinus fangiana HOM05D004141 ORTHO05D005416 2.9e-66 256.9 440 39.3
vmacro11945 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 1.8e-63 247.7 267 51.7
Haze_09318 Corylus avellana HOM05D004141 ORTHO05D005416 2.3e-58 230.7 264 48.9
DCAR_013161 Daucus carota HOM05D004141 ORTHO05D005416 2.3e-58 230.7 240 50.8
Rhsim12G0175600 Rhododendron simsii HOM05D004141 ORTHO05D005416 9.5e-49 198.7 396 34.3
BcaC01g01525 Brassica carinata HOM05D004141 ORTHO05D005416 2.4e-44 184.1 180 55.0
CAN.G4738.1 Capsicum annuum HOM05D004141 ORTHO05D005416 1.2e-40 171.8 141 59.6
Nitab4.5_0002851g0030 Nicotiana tabacum HOM05D004141 ORTHO05D005416 7.5e-38 162.5 178 49.4
Lalb_Chr01g0016531 Lupinus albus HOM05D004141 ORTHO05D005416 2.9e-37 160.6 136 57.4
Rhsim08G0243200 Rhododendron simsii HOM05D004141 ORTHO05D005416 6.4e-37 159.5 276 38.0
Rhsim02G0229600 Rhododendron simsii HOM05D004141 ORTHO05D005416 8.3e-37 159.1 143 51.7
Rhsim06G0208700 Rhododendron simsii HOM05D004141 ORTHO05D005416 7.8e-35 152.5 341 33.1
Lalb_Chr01g0016541 Lupinus albus HOM05D004141 ORTHO05D048486 1.3e-34 151.8 120 63.3
MD03G1178900 Malus domestica HOM05D004141 ORTHO05D005416 6.6e-34 149.4 219 42.5
MD00G1077900 Malus domestica HOM05D004141 ORTHO05D005416 1.5e-33 148.3 185 46.5
Ciclev10022599m.g Citrus clementina HOM05D004141 ORTHO05D005416 1.1e-31 142.1 197 43.1
Ciclev10022380m.g Citrus clementina HOM05D004141 ORTHO05D005416 4.0e-31 140.2 244 36.1
SHI22488 Sapria himalayana HOM05D004141 ORTHO05D005416 1.8e-23 114.8 76 67.1
BcaB05g25154 Brassica carinata HOM05D004141 ORTHO05D005416 5.8e-22 109.8 165 38.8
A02p22350 Brassica napus HOM05D004141 ORTHO05D026982 2.5e-17 94.4 75 58.7
BraA02t07239Z Brassica rapa HOM05D004141 ORTHO05D026982 4.3e-17 93.6 75 57.3
EL10Ac3g06735 Beta vulgaris HOM05D004141 ORTHO05D026982 3.6e-16 90.5 53 73.6
EL10Ac3g06738 Beta vulgaris HOM05D004141 ORTHO05D026982 3.6e-16 90.5 53 73.6
C02p35890 Brassica napus HOM05D004141 ORTHO05D005416 1.4e-15 88.6 65 61.5
Nitab4.5_0010088g0010 Nicotiana tabacum HOM05D004141 ORTHO05D005416 6.9e-15 86.3 67 58.2
MD00G1077500 Malus domestica HOM05D004141 ORTHO05D005416 1.2e-14 85.5 66 56.1
Rhsim02G0051400 Rhododendron simsii HOM05D004141 ORTHO05D000437 1.4e-12 78.6 68 55.9
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 1.7e-10 71.6 246 28.9
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 6.6e-10 69.7 348 26.1
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 9.6e-09 65.9 137 33.6
BcaC01g01527 Brassica carinata HOM05D004141 ORTHO05D009181 1.6e-08 65.1 58 51.7
Phvul.001G209600 Phaseolus vulgaris HOM05D000783 ORTHO05D000705 2.4e-07 61.2 241 26.1
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 3.1e-07 60.8 455 22.4
BcaC01g01526 Brassica carinata HOM05D004141 ORTHO05D005416 1.5e-06 58.5 54 51.9
MD00G1078000 Malus domestica HOM05D004141 ORTHO05D005416 1.5e-06 58.5 42 59.5
HPP92_025200 Vanilla planifolia HOM05D000783 ORTHO05D000705 2.6e-06 57.8 179 27.9
Nn8g39259 Nelumbo nucifera HOM05D004627 ORTHO05D005745 4.5e-06 57.0 217 27.6
BcaC03g15838 Brassica carinata HOM05D004141 ORTHO05D005416 7.6e-06 56.2 41 63.4
THA.LOC104818012 Tarenaya hassleriana HOM05D004627 ORTHO05D005745 9.9e-06 55.8 126 31.7


User provided reference genes

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