Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0090 Marchantia polymorpha HOM05D004446 ORTHO05D005346 6.3e-76 287.3 144 100.0
Pp3c5_4240 Physcomitrium patens HOM05D004446 ORTHO05D005346 8.6e-57 223.8 138 76.8
AagrBONN_evm.TU.Sc2ySwM_344.5082 Anthoceros agrestis HOM05D004446 ORTHO05D005346 3.3e-56 221.9 142 74.6
Pp3c16_2570 Physcomitrium patens HOM05D004446 ORTHO05D005346 2.1e-55 219.2 138 76.1
CBR_g9031 Chara braunii HOM05D004446 ORTHO05D005346 2.7e-50 202.2 139 64.0
Manes.03G155100 Manihot esculenta HOM05D004446 ORTHO05D005346 3.9e-49 198.4 142 67.6
Hund19262 Selenicereus undatus HOM05D004446 ORTHO05D005346 5.0e-49 198.0 142 66.2
THA.LOC104826105 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 1.5e-48 196.4 142 64.8
Sc19g0005800 Simmondsia chinensis HOM05D004446 ORTHO05D005346 1.9e-48 196.1 142 66.2
Zm00001eb008370 Zea mays HOM05D004446 ORTHO05D005346 1.9e-48 196.1 142 65.5
THA.LOC104816014 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 3.3e-48 195.3 142 64.8
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 4.3e-48 194.9 139 66.9
Manes.15G048500 Manihot esculenta HOM05D004446 ORTHO05D005346 5.6e-48 194.5 142 66.2
DCAR_027363 Daucus carota HOM05D004446 ORTHO05D005346 7.3e-48 194.1 142 65.5
Cc00_g09360 Coffea canephora HOM05D004446 ORTHO05D005346 9.5e-48 193.7 142 64.8
Duzib212G0284 Durio zibethinus HOM05D004446 ORTHO05D005346 9.5e-48 193.7 142 65.5
Lsat_1_v5_gn_2_41880 Lactuca sativa HOM05D004446 ORTHO05D005346 9.5e-48 193.7 142 65.5
Thecc.04G215500 Theobroma cacao HOM05D004446 ORTHO05D005346 9.5e-48 193.7 142 66.2
AUR62035332 Chenopodium quinoa HOM05D004446 ORTHO05D005346 1.2e-47 193.4 142 65.5
ECA238G1521 Erigeron canadensis HOM05D004446 ORTHO05D005346 1.2e-47 193.4 142 66.9
Gohir.D10G146200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.2e-47 193.4 142 65.5
Gorai.011G163300 Gossypium raimondii HOM05D004446 ORTHO05D005346 1.2e-47 193.4 142 65.5
CSS0043422 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 1.6e-47 193.0 142 64.8
CSS0044163 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 1.6e-47 193.0 142 64.8
CDE04G3627 Ceratophyllum demersum HOM05D004446 ORTHO05D005346 1.6e-47 193.0 142 65.5
Gohir.A10G120100 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.6e-47 193.0 142 65.5
Gohir.D10G146300 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.6e-47 193.0 142 65.5
Gorai.011G163400 Gossypium raimondii HOM05D004446 ORTHO05D005346 1.6e-47 193.0 142 65.5
HanXRQChr06g0183261 Helianthus annuus HOM05D004446 ORTHO05D005346 2.1e-47 192.6 142 65.5
TWI73G1246 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 2.1e-47 192.6 142 65.5
vmacro00521 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 2.1e-47 192.6 142 64.1
Zm00001eb401250 Zea mays HOM05D004446 ORTHO05D005346 2.1e-47 192.6 142 64.1
Gohir.A10G120200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 2.8e-47 192.2 142 64.1
CiPaw.02G127900 Carya illinoinensis HOM05D004446 ORTHO05D005346 3.6e-47 191.8 142 64.1
Lsat_1_v5_gn_2_41141 Lactuca sativa HOM05D004446 ORTHO05D005346 3.6e-47 191.8 141 65.2
HanXRQChr14g0434271 Helianthus annuus HOM05D004446 ORTHO05D005346 4.7e-47 191.4 142 64.8
CANSAT78G0709 Cannabis sativa HOM05D004446 ORTHO05D005346 8.0e-47 190.7 142 65.5
SalBow2G1310 Salvia bowleyana HOM05D004446 ORTHO05D005346 8.0e-47 190.7 142 63.4
Potri.003G173800 Populus trichocarpa HOM05D004446 ORTHO05D005346 1.1e-46 190.3 142 64.8
SEGI_11387 Sequoiadendron giganteum HOM05D004446 ORTHO05D005346 1.1e-46 190.3 142 63.4
Cpa.g.sc59.66 Carica papaya HOM05D004446 ORTHO05D005346 1.4e-46 189.9 142 64.1
Nn2g14612 Nelumbo nucifera HOM05D004446 ORTHO05D005346 1.4e-46 189.9 142 64.1
TWI09G0335 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 1.4e-46 189.9 142 64.8
AL1G14310 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 1.8e-46 189.5 142 64.8
EL10Ac3g06748 Beta vulgaris HOM05D004446 ORTHO05D005346 1.8e-46 189.5 142 64.1
FvH4_4g05410 Fragaria vesca HOM05D004446 ORTHO05D005346 1.8e-46 189.5 142 63.4
FAN07G2016 Fragaria x ananassa HOM05D004446 ORTHO05D005346 1.8e-46 189.5 142 63.4
FAN12G2493 Fragaria x ananassa HOM05D004446 ORTHO05D005346 1.8e-46 189.5 142 63.4
FAN12G4338 Fragaria x ananassa HOM05D004446 ORTHO05D005346 1.8e-46 189.5 142 63.4
Atru.chr4.1819 Acer truncatum HOM05D004446 ORTHO05D005346 2.3e-46 189.1 142 64.8
COL.COLO4_05729 Corchorus olitorius HOM05D004446 ORTHO05D005346 2.3e-46 189.1 142 64.8
Thhalv10009042m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 3.1e-46 188.7 142 64.1
TAR633G2153 Trochodendron aralioides HOM05D004446 ORTHO05D005346 3.1e-46 188.7 142 64.1
Aa31LG1G20240 Aethionema arabicum HOM05D004446 ORTHO05D005346 4.0e-46 188.3 142 63.4
CARHR003980 Cardamine hirsuta HOM05D004446 ORTHO05D005346 4.0e-46 188.3 142 64.1
Potri.001G054500 Populus trichocarpa HOM05D004446 ORTHO05D005346 4.0e-46 188.3 142 64.1
ATR0736G077 Amborella trichopoda HOM05D004446 ORTHO05D005346 5.2e-46 188.0 142 63.4
MSTRG.24643 Avicennia marina HOM05D004446 ORTHO05D005346 5.2e-46 188.0 142 62.7
SGA_v2.0_scaffold155G37240 Striga asiatica HOM05D004446 ORTHO05D005346 5.2e-46 188.0 142 62.0
AUR62035909 Chenopodium quinoa HOM05D004446 ORTHO05D005346 6.8e-46 187.6 140 65.7
Nn5g27558 Nelumbo nucifera HOM05D004446 ORTHO05D005346 6.8e-46 187.6 142 63.4
Solyc09g091170.4 Solanum lycopersicum HOM05D004446 ORTHO05D005346 6.8e-46 187.6 142 62.7
Sopen09g034140 Solanum pennellii HOM05D004446 ORTHO05D005346 6.8e-46 187.6 142 62.7
Aqoxy3G02680 Aquilegia oxysepala HOM05D004446 ORTHO05D005346 8.9e-46 187.2 142 63.4
Sed0017441 Sechium edule HOM05D004446 ORTHO05D005346 8.9e-46 187.2 142 62.7
AL4G28840 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 1.2e-45 186.8 142 64.1
AT1G04630 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 1.2e-45 186.8 142 64.1
AT2G33220 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 1.2e-45 186.8 142 64.1
Carub.0001s0386 Capsella rubella HOM05D004446 ORTHO05D005346 1.2e-45 186.8 142 64.1
Ciclev10006172m.g Citrus clementina HOM05D004446 ORTHO05D005346 1.2e-45 186.8 142 63.4
Lalb_Chr03g0036811 Lupinus albus HOM05D004446 ORTHO05D005346 1.2e-45 186.8 142 62.7
RcHm_v2.0_Chr4g0396561 Rosa chinensis HOM05D004446 ORTHO05D005346 1.2e-45 186.8 142 62.7
Sp4g15520 Schrenkiella parvula HOM05D004446 ORTHO05D005346 1.2e-45 186.8 142 63.4
HPP92_008960 Vanilla planifolia HOM05D004446 ORTHO05D005346 1.2e-45 186.8 142 60.6
Aa31LG5G4110 Aethionema arabicum HOM05D004446 ORTHO05D005346 2.0e-45 186.0 142 62.7
BcaB03g13480 Brassica carinata HOM05D004446 ORTHO05D005346 2.0e-45 186.0 142 63.4
Eucgr.H02865 Eucalyptus grandis HOM05D004446 ORTHO05D005346 2.0e-45 186.0 142 62.7
Nitab4.5_0000451g0180 Nicotiana tabacum HOM05D004446 ORTHO05D005346 2.0e-45 186.0 142 62.0
Nitab4.5_0018759g0010 Nicotiana tabacum HOM05D004446 ORTHO05D005346 2.0e-45 186.0 142 62.0
Peaxi162Scf00047g01619 Petunia axillaris HOM05D004446 ORTHO05D005346 2.0e-45 186.0 142 62.0
Prupe.1G056200 Prunus persica HOM05D004446 ORTHO05D005346 2.0e-45 186.0 142 62.7
BcaC07g36901 Brassica carinata HOM05D004446 ORTHO05D005346 2.6e-45 185.7 142 63.4
A08p36850 Brassica napus HOM05D004446 ORTHO05D005346 2.6e-45 185.7 142 63.4
A09p67770 Brassica napus HOM05D004446 ORTHO05D005346 2.6e-45 185.7 142 63.4
A10p03060 Brassica napus HOM05D004446 ORTHO05D005346 2.6e-45 185.7 142 63.4
C05p02820 Brassica napus HOM05D004446 ORTHO05D005346 2.6e-45 185.7 142 63.4
C08p01220 Brassica napus HOM05D004446 ORTHO05D005346 2.6e-45 185.7 142 63.4
BolC5t29065H Brassica oleracea HOM05D004446 ORTHO05D005346 2.6e-45 185.7 142 63.4
BolC8t46930H Brassica oleracea HOM05D004446 ORTHO05D005346 2.6e-45 185.7 142 63.4
BraA08t35586Z Brassica rapa HOM05D004446 ORTHO05D005346 2.6e-45 185.7 142 63.4
BraA09t42108Z Brassica rapa HOM05D004446 ORTHO05D005346 2.6e-45 185.7 142 63.4
BraA10t42579Z Brassica rapa HOM05D004446 ORTHO05D005346 2.6e-45 185.7 142 63.4
CARHR127230 Cardamine hirsuta HOM05D004446 ORTHO05D005346 2.6e-45 185.7 142 63.4
Thhalv10017386m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 2.6e-45 185.7 142 63.4
MD16G1234000 Malus domestica HOM05D004446 ORTHO05D005346 2.6e-45 185.7 142 62.0
Rhsim09G0047000 Rhododendron simsii HOM05D004446 ORTHO05D005346 2.6e-45 185.7 149 61.1
RhsimUnG0181300 Rhododendron simsii HOM05D004446 ORTHO05D005346 2.6e-45 185.7 149 61.1
Sp1g03460 Schrenkiella parvula HOM05D004446 ORTHO05D005346 2.6e-45 185.7 142 63.4
TAR365G0553 Trochodendron aralioides HOM05D004446 ORTHO05D005346 2.6e-45 185.7 142 63.4
CiPaw.01G206200 Carya illinoinensis HOM05D004446 ORTHO05D005346 4.4e-45 184.9 142 62.0
Carub.0004s1468 Capsella rubella HOM05D004446 ORTHO05D005346 5.8e-45 184.5 142 63.4
MD13G1228700 Malus domestica HOM05D004446 ORTHO05D005346 5.8e-45 184.5 142 62.0
PGSC0003DMG400011587 Solanum tuberosum HOM05D004446 ORTHO05D005346 5.8e-45 184.5 142 62.0
Actinidia35938 Actinidia chinensis HOM05D004446 ORTHO05D005346 7.5e-45 184.1 142 61.3
Lalb_Chr01g0011251 Lupinus albus HOM05D004446 ORTHO05D005346 7.5e-45 184.1 142 61.3
ClCG06G007390 Citrullus lanatus HOM05D004446 ORTHO05D005346 9.8e-45 183.7 142 62.7
CsaV3_2G012290 Cucumis sativus L. HOM05D004446 ORTHO05D005346 9.8e-45 183.7 142 62.7
MELO3C023063.2 Cucumis melo HOM05D004446 ORTHO05D005346 1.3e-44 183.3 142 62.7
Phvul.007G238600 Phaseolus vulgaris HOM05D004446 ORTHO05D005346 1.3e-44 183.3 142 60.6
TAR362G0142 Trochodendron aralioides HOM05D004446 ORTHO05D005346 1.7e-44 183.0 142 62.0
PGR044G1212 Punica granatum HOM05D004446 ORTHO05D005346 2.9e-44 182.2 142 62.0
QL06p022604 Quercus lobata HOM05D004446 ORTHO05D005346 2.9e-44 182.2 142 62.7
arahy.Tifrunner.gnm1.ann1.VC13RQ Arachis hypogaea HOM05D004446 ORTHO05D005346 3.7e-44 181.8 142 60.6
Glyma.20G079400 Glycine max HOM05D004446 ORTHO05D005346 4.9e-44 181.4 142 61.3
TPR.G23640 Trifolium pratense HOM05D004446 ORTHO05D005346 4.9e-44 181.4 142 61.3
VMungo0720G0669 Vigna mungo HOM05D004446 ORTHO05D005346 4.9e-44 181.4 142 60.6
Medtr1g046380 Medicago truncatula HOM05D004446 ORTHO05D005346 6.4e-44 181.0 142 61.3
Psat6g109720 Pisum sativum HOM05D004446 ORTHO05D005346 6.4e-44 181.0 142 61.3
arahy.Tifrunner.gnm1.ann1.Q5T5LU Arachis hypogaea HOM05D004446 ORTHO05D005346 8.3e-44 180.6 142 59.9
Os03g0192400 Oryza sativa ssp. japonica HOM05D004446 ORTHO05D005346 8.3e-44 180.6 141 61.0
PSO063G0015 Papaver somniferum HOM05D004446 ORTHO05D005346 8.3e-44 180.6 142 61.3
vmacro22557 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 8.3e-44 180.6 152 58.6
Lj6g0002383 Lotus japonicus HOM05D004446 ORTHO05D005346 1.4e-43 179.9 142 61.3
PSO782G0825 Papaver somniferum HOM05D004446 ORTHO05D005346 1.9e-43 179.5 142 60.6
Glyma.10G128100 Glycine max HOM05D004446 ORTHO05D005346 2.4e-43 179.1 142 60.6
Hma1.2p1_2329F.1_g320020 Hydrangea macrophylla HOM05D004446 ORTHO05D005346 7.0e-43 177.6 173 53.2
Ca_11789_v3 Cicer arietinum L. HOM05D004446 ORTHO05D005346 1.6e-42 176.4 142 60.6
Migut.G00605 Erythranthe guttata HOM05D004446 ORTHO05D005346 2.1e-42 176.0 142 59.9
BcaC07g42166 Brassica carinata HOM05D004446 ORTHO05D005346 3.1e-38 162.2 142 57.7
Actinidia25089 Actinidia chinensis HOM05D004446 ORTHO05D005346 1.7e-33 146.4 175 44.0
Ah.13g075110 Amaranthus hybridus HOM05D004446 ORTHO05D005346 3.9e-33 145.2 142 51.4
MCO16G128 Micromonas commoda HOM05D004446 ORTHO05D005346 3.9e-33 145.2 133 51.9
BolC3t14561H Brassica oleracea HOM05D004446 ORTHO05D005346 5.1e-33 144.8 137 55.5
Sabra03G0127300 Salix brachista HOM05D004446 ORTHO05D005346 8.6e-33 144.1 258 36.4
unitig_748.g8289 Utricularia gibba HOM05D002765 ORTHO05D003083 1.9e-32 142.9 142 52.8
BolC8t52743H Brassica oleracea HOM05D004446 ORTHO05D005346 4.0e-30 135.2 136 55.1
SMO364G0175 Selaginella moellendorffii HOM05D004446 ORTHO05D005346 1.5e-29 133.3 133 52.6
Sabra01G0039000 Salix brachista HOM05D004446 ORTHO05D005346 4.1e-27 125.2 306 30.7
Cre16.g664600 Chlamydomonas reinhardtii HOM05D004446 ORTHO05D005346 1.2e-26 123.6 133 44.4
GSVIVG01028486001 Vitis vinifera HOM05D004446 ORTHO05D005346 1.5e-24 116.7 81 67.9
Dinv27149 Davidia involucrata HOM05D004446 ORTHO05D005346 9.6e-24 114.0 81 66.7
C08p52100 Brassica napus HOM05D004446 ORTHO05D005346 4.4e-21 105.1 87 58.6
Oeu008823.1 Olea europaea HOM05D004446 ORTHO05D005346 1.7e-20 103.2 70 68.6
RhsimUnG0181500 Rhododendron simsii HOM05D004446 ORTHO05D005346 1.1e-19 100.5 71 64.8
Haze_11535 Corylus avellana HOM05D004446 ORTHO05D005346 1.4e-19 100.1 81 58.0
CAN.G1588.2 Capsicum annuum HOM05D004446 ORTHO05D005346 2.4e-19 99.4 71 63.4
A03p18650 Brassica napus HOM05D004446 ORTHO05D005346 7.1e-19 97.8 71 63.4
BraA03t11124Z Brassica rapa HOM05D004446 ORTHO05D005346 7.1e-19 97.8 71 63.4
Zm00001eb305890 Zea mays HOM05D004446 ORTHO05D005346 4.6e-18 95.1 68 61.8
MBI10_g44933_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 1.6e-15 86.7 63 63.5
Oeu008826.1 Olea europaea HOM05D004446 ORTHO05D005346 6.9e-14 81.3 64 56.2
BcaC01g05851 Brassica carinata HOM05D004446 ORTHO05D005346 9.9e-13 77.4 73 57.5
MBI10_g35300_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 4.9e-12 75.1 145 35.2
Cc05_g03600 Coffea canephora HOM05D004446 ORTHO05D005346 1.6e-10 70.1 72 51.4
SHI08306 Sapria himalayana HOM05D004446 ORTHO05D005346 1.6e-10 70.1 63 54.0
C03p21790 Brassica napus HOM05D004446 ORTHO05D005346 3.9e-09 65.5 45 66.7
PRCOL_00006069 Prasinoderma coloniale HOM05D004446 ORTHO05D005346 8.7e-09 64.3 98 36.7
SHI22881 Sapria himalayana HOM05D004446 ORTHO05D005346 1.9e-08 63.2 51 62.7


User provided reference genes

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