Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 5.6e-121 437.6 213 100.0
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 3.4e-78 295.4 208 63.9
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 1.0e-77 293.9 208 62.5
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 1.2e-75 287.0 208 62.5
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 6.1e-75 284.6 207 61.4
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 1.0e-74 283.9 208 61.5
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 3.9e-74 282.0 204 61.8
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 6.7e-74 281.2 208 61.1
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 3.3e-73 278.9 207 58.0
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 4.3e-73 278.5 208 57.7
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 1.6e-72 276.6 207 58.0
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 2.2e-72 276.2 207 56.5
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 2.8e-72 275.8 207 57.0
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 6.3e-72 274.6 207 56.5
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 6.3e-72 274.6 210 58.6
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 6.3e-72 274.6 207 56.5
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 1.1e-71 273.9 208 57.2
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 1.4e-71 273.5 208 59.6
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 1.8e-71 273.1 207 56.5
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 2.4e-71 272.7 207 59.4
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 4.1e-71 271.9 209 56.0
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 5.3e-71 271.6 208 57.7
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 1.5e-70 270.0 208 57.2
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 1.5e-70 270.0 209 58.4
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 1.5e-70 270.0 209 57.4
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 2.0e-70 269.6 207 58.5
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 2.6e-70 269.2 207 58.5
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 2.6e-70 269.2 209 57.9
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 3.4e-70 268.9 208 56.2
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 4.5e-70 268.5 207 56.0
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 5.9e-70 268.1 208 55.8
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 5.9e-70 268.1 208 55.8
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 7.7e-70 267.7 207 56.0
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 1.0e-69 267.3 208 57.7
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 2.2e-69 266.2 207 55.6
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 2.2e-69 266.2 207 58.5
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 6.5e-69 264.6 207 57.5
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 8.5e-69 264.2 209 57.4
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 1.1e-68 263.8 207 58.5
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 1.9e-68 263.1 204 56.4
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 1.9e-68 263.1 210 55.7
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 2.5e-68 262.7 210 56.2
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 3.2e-68 262.3 206 57.3
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 4.2e-68 261.9 208 55.3
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 7.2e-68 261.2 207 56.5
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 7.2e-68 261.2 209 54.1
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 7.2e-68 261.2 207 55.1
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 9.4e-68 260.8 208 55.8
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 9.4e-68 260.8 205 56.6
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 1.2e-67 260.4 207 55.1
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 1.2e-67 260.4 208 55.3
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 2.1e-67 259.6 208 55.3
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.6e-67 258.8 218 53.2
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 4.6e-67 258.5 208 54.8
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 4.6e-67 258.5 208 53.4
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 7.9e-67 257.7 207 55.6
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 7.9e-67 257.7 208 54.3
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 1.0e-66 257.3 208 54.8
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 1.0e-66 257.3 208 54.8
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 1.4e-66 256.9 207 55.1
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 1.8e-66 256.5 208 55.3
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 1.8e-66 256.5 206 56.3
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 1.8e-66 256.5 207 54.6
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 5.1e-66 255.0 208 54.3
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 5.1e-66 255.0 207 54.1
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 6.7e-66 254.6 208 53.4
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 6.7e-66 254.6 209 55.5
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 8.8e-66 254.2 208 53.8
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 1.1e-65 253.8 207 51.2
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 1.5e-65 253.4 210 55.7
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 2.0e-65 253.1 207 55.1
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 3.3e-65 252.3 207 53.6
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 5.7e-65 251.5 206 56.3
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 5.7e-65 251.5 210 55.2
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 7.4e-65 251.1 208 54.3
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 9.7e-65 250.8 208 51.9
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 9.7e-65 250.8 206 54.4
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 1.3e-64 250.4 206 53.9
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 1.3e-64 250.4 206 53.4
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 1.3e-64 250.4 206 53.4
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 1.7e-64 250.0 210 54.8
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.8e-64 249.2 210 53.3
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 3.7e-64 248.8 210 54.8
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 3.7e-64 248.8 210 54.8
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 6.3e-64 248.1 206 52.4
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 8.2e-64 247.7 210 53.3
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 8.2e-64 247.7 206 52.9
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 1.8e-63 246.5 208 52.4
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 5.3e-63 245.0 209 54.5
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.5e-62 243.4 206 51.9
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 2.0e-62 243.0 206 53.4
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 2.6e-62 242.7 207 53.6
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 5.9e-62 241.5 209 54.1
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 5.9e-62 241.5 238 49.6
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 5.9e-62 241.5 206 52.9
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 7.7e-62 241.1 206 52.4
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.0e-61 240.7 208 50.0
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 1.0e-61 240.7 206 53.4
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 2.9e-61 239.2 210 53.3
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 9.4e-60 234.2 206 51.5
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 1.8e-58 229.9 209 48.8
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 3.0e-58 229.2 209 53.6
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 3.9e-58 228.8 170 62.9
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 6.7e-58 228.0 185 55.7
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 6.7e-58 228.0 207 54.6
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 4.1e-55 218.8 198 52.5
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 2.0e-54 216.5 208 45.7
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 3.5e-54 215.7 198 48.5
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 1.0e-53 214.2 194 51.5
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 1.0e-53 214.2 167 58.1
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.7e-53 213.4 198 49.0
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.2e-52 209.1 160 57.5
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 5.5e-52 208.4 185 52.4
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 1.0e-50 204.1 206 45.6
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 8.8e-50 201.1 206 44.7
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 5.3e-47 191.8 200 48.5
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 9.1e-47 191.0 138 60.9
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 9.1e-47 191.0 206 42.7
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 2.9e-45 186.0 195 45.1
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.1e-44 184.1 231 43.7
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.2e-43 180.6 137 59.9
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 4.0e-42 175.6 136 57.4
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.8e-40 169.5 127 59.8
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 3.7e-40 169.1 122 61.5
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 5.0e-37 158.7 211 37.9
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.5e-37 158.3 157 45.2
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 6.8e-34 148.3 233 38.2
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 5.7e-33 145.2 110 60.0
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 9.8e-33 144.4 200 38.0
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 4.5e-30 135.6 213 33.8
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.4e-26 124.0 111 46.8
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 6.4e-24 115.2 214 33.2
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 1.4e-23 114.0 75 66.7
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 4.1e-23 112.5 137 42.3
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 4.6e-22 109.0 209 33.0
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 2.5e-20 103.2 207 30.9
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 2.2e-16 90.1 71 50.7
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 4.9e-16 89.0 179 29.6
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 2.0e-14 83.6 72 47.2
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 2.3e-13 80.1 57 52.6
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 8.6e-13 78.2 202 25.7
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 3.6e-11 72.8 109 36.7
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 3.6e-11 72.8 109 36.7
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 1.4e-10 70.9 109 35.8
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.5e-09 67.4 106 36.8
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 3.4e-09 66.2 41 63.4
Cre10.g464500 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 2.2e-08 63.5 223 22.4
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 8.3e-08 61.6 40 62.5
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.9e-07 60.5 80 42.5


User provided reference genes

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