Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 0.0e+00 1837.0 1084 100.0
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 8.3e-221 771.5 979 48.6
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 1.3e-194 684.5 944 46.3
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 4.8e-192 676.0 1053 42.8
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 1.6e-187 661.0 937 45.9
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 9.0e-183 645.2 1047 42.5
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 7.6e-182 642.1 872 46.0
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 1.3e-181 641.3 1010 43.3
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 1.1e-180 638.3 929 45.2
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 7.1e-180 635.6 829 47.4
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 1.2e-179 634.8 1023 43.5
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 1.6e-179 634.4 1030 42.4
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 2.3e-178 630.6 1007 43.6
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 1.9e-177 627.5 917 43.6
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 1.9e-177 627.5 1039 42.3
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 3.3e-177 626.7 917 44.9
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 5.6e-177 625.9 1025 42.8
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 3.7e-176 623.2 1068 41.9
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 6.2e-176 622.5 909 44.8
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 8.1e-176 622.1 1037 42.0
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.4e-175 621.3 1014 41.6
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 1.8e-175 620.9 982 42.5
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 5.3e-175 619.4 1044 41.4
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 2.6e-174 617.1 937 43.5
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 4.5e-174 616.3 1044 41.3
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 5.8e-174 615.9 916 43.8
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 2.2e-173 614.0 893 44.8
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 2.9e-173 613.6 918 43.2
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 8.4e-173 612.1 1009 43.1
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 1.1e-172 611.7 912 43.8
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 1.1e-172 611.7 866 45.4
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 1.4e-172 611.3 1018 43.2
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 1.9e-172 610.9 979 42.5
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 4.2e-172 609.8 924 42.9
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 5.5e-172 609.4 797 46.7
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 3.5e-171 606.7 897 43.9
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 4.6e-171 606.3 896 44.1
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 6.0e-171 605.9 966 42.4
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 1.0e-170 605.1 903 43.7
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 2.3e-170 604.0 1021 42.5
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 3.9e-170 603.2 1048 40.5
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 5.1e-170 602.8 1054 41.7
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 5.1e-170 602.8 1016 41.9
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 6.7e-170 602.4 992 42.3
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 6.7e-170 602.4 994 43.5
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 8.7e-170 602.1 1051 40.5
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 1.1e-169 601.7 1050 41.2
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 1.1e-169 601.7 1038 40.8
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 2.5e-169 600.5 985 42.6
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 4.3e-169 599.7 1017 42.3
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 5.7e-169 599.4 877 43.6
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 5.7e-169 599.4 1072 40.1
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 7.4e-169 599.0 1004 42.4
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 1.6e-168 597.8 1029 42.1
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 1.6e-168 597.8 958 42.5
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 2.8e-168 597.0 939 43.1
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 3.7e-168 596.7 1015 42.0
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 4.8e-168 596.3 908 43.5
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 4.8e-168 596.3 1050 40.3
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 6.2e-168 595.9 986 42.6
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 1.1e-167 595.1 944 43.1
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 1.4e-167 594.7 933 41.8
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 4.0e-167 593.2 1029 40.7
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 6.9e-167 592.4 921 43.0
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 9.0e-167 592.0 1043 39.5
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 2.0e-166 590.9 953 42.6
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 3.4e-166 590.1 935 42.0
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 7.6e-166 589.0 1029 39.7
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 1.3e-165 588.2 863 43.9
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 1.7e-165 587.8 993 41.6
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 1.4e-164 584.7 998 40.7
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 1.9e-164 584.3 960 42.7
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 2.5e-164 583.9 988 41.5
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 5.5e-164 582.8 918 42.3
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 2.1e-163 580.9 954 41.4
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 2.1e-163 580.9 910 42.0
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 5.1e-162 576.2 982 41.9
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 6.7e-162 575.9 1021 41.7
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 3.3e-161 573.5 1032 41.1
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 5.7e-161 572.8 859 43.0
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 2.2e-160 570.9 1059 40.6
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 8.2e-160 568.9 1029 39.6
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 1.1e-159 568.5 1160 36.5
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.4e-159 568.2 907 41.3
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 1.8e-159 567.8 1049 40.1
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 2.4e-159 567.4 1037 40.9
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 4.1e-159 566.6 987 39.8
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 9.0e-159 565.5 1011 40.7
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 2.6e-158 563.9 986 39.8
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 7.7e-158 562.4 695 48.6
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 3.0e-154 550.4 943 41.4
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 2.5e-153 547.4 1028 39.8
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 9.7e-153 545.4 727 44.8
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 1.7e-152 544.7 1023 39.3
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 2.8e-152 543.9 988 39.1
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 1.1e-151 542.0 949 40.0
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 1.8e-151 541.2 883 40.9
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 1.4e-148 531.6 1021 39.2
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 5.5e-140 503.1 915 38.1
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 3.0e-138 497.3 1201 35.6
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 5.2e-138 496.5 620 47.9
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 6.3e-136 489.6 916 39.1
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 7.7e-134 482.6 882 38.5
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.2e-133 481.1 870 40.6
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 6.8e-130 469.5 1033 36.7
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 3.5e-126 457.2 812 40.8
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 4.5e-126 456.8 595 47.6
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 6.5e-125 453.0 1074 35.4
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.1e-119 435.6 702 43.7
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 9.1e-119 432.6 636 44.0
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 9.8e-105 386.0 575 44.7
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 3.9e-101 374.0 615 42.1
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 8.6e-101 372.9 832 35.3
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 5.6e-100 370.2 785 37.8
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 4.4e-97 360.5 508 45.3
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 1.7e-88 332.0 648 38.7
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 1.9e-87 328.6 713 36.0
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 1.5e-81 308.9 577 41.8
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 7.1e-79 300.1 884 31.7
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 1.1e-68 266.2 362 45.0
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 4.2e-63 247.7 384 44.3
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 7.2e-47 193.7 367 36.5
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 2.7e-38 165.2 205 47.3
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 3.3e-36 158.3 209 43.1
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.2e-33 149.8 320 38.1
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 7.7e-33 147.1 226 43.4
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 7.2e-31 140.6 186 47.8
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 1.5e-20 106.3 260 38.1
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 8.2e-19 100.5 128 46.9
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 7.7e-17 94.0 160 40.0
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 1.3e-16 93.2 107 51.4
Mapoly0044s0063 Marchantia polymorpha HOM05D001331 ORTHO05D001157 2.9e-16 92.0 70 75.7
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 1.6e-14 86.3 157 36.9
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 2.8e-11 75.5 105 42.9
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 2.8e-11 75.5 98 44.9
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 3.7e-11 75.1 50 68.0
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 2.7e-09 68.9 56 58.9
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.5e-07 62.4 238 31.9


User provided reference genes

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