Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 4.2e-95 351.3 169 100.0
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 1.4e-79 299.7 169 81.7
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 6.3e-59 231.1 141 75.2
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 5.9e-49 198.0 184 53.3
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 1.1e-47 193.7 163 57.7
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 3.4e-44 182.2 169 49.1
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 3.7e-43 178.7 169 49.1
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 1.1e-42 177.2 169 48.5
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 7.0e-42 174.5 169 49.7
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 1.6e-41 173.3 168 47.6
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 1.6e-41 173.3 168 47.6
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 3.5e-41 172.2 169 47.9
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 5.9e-41 171.4 169 49.1
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 2.9e-40 169.1 169 46.7
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 2.9e-40 169.1 169 47.3
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 2.9e-40 169.1 169 45.0
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 3.8e-40 168.7 169 45.0
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 3.8e-40 168.7 97 77.3
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 6.6e-40 167.9 169 44.4
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 6.6e-40 167.9 169 44.4
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 6.6e-40 167.9 169 45.6
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 8.6e-40 167.5 169 45.6
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 1.1e-39 167.2 169 45.0
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 1.5e-39 166.8 171 45.0
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 1.9e-39 166.4 169 45.0
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 1.9e-39 166.4 169 45.0
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 4.2e-39 165.2 170 45.3
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 9.5e-39 164.1 171 45.0
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 2.8e-38 162.5 169 44.4
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 2.8e-38 162.5 171 48.0
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 3.6e-38 162.2 169 44.4
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 6.1e-38 161.4 169 44.4
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 8.0e-38 161.0 169 45.0
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 1.4e-37 160.2 169 44.4
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 1.4e-37 160.2 171 43.9
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 1.4e-37 160.2 169 43.2
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 3.0e-37 159.1 168 42.3
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 4.0e-37 158.7 169 45.0
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 4.0e-37 158.7 169 43.2
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 5.2e-37 158.3 169 42.6
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 5.2e-37 158.3 179 41.3
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 6.8e-37 157.9 169 43.2
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 1.2e-36 157.1 169 43.8
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 1.2e-36 157.1 169 43.2
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 2.6e-36 156.0 164 45.7
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 3.4e-36 155.6 169 42.6
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 4.4e-36 155.2 169 45.0
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 5.7e-36 154.8 169 43.2
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 7.5e-36 154.5 173 45.1
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 7.5e-36 154.5 169 43.8
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 7.5e-36 154.5 169 43.2
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 9.8e-36 154.1 171 40.9
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 9.8e-36 154.1 169 43.8
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 1.3e-35 153.7 169 43.2
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 1.7e-35 153.3 170 42.9
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 1.7e-35 153.3 169 43.2
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 2.2e-35 152.9 169 43.8
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 2.2e-35 152.9 169 43.8
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 2.8e-35 152.5 169 43.2
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 2.8e-35 152.5 169 43.8
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 3.7e-35 152.1 169 43.8
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 3.7e-35 152.1 169 43.8
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 3.7e-35 152.1 169 43.8
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 3.7e-35 152.1 169 43.8
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 4.9e-35 151.8 169 40.8
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 1.1e-34 150.6 169 40.8
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 1.4e-34 150.2 169 45.0
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 1.4e-34 150.2 169 45.0
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 2.4e-34 149.4 169 42.6
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 3.1e-34 149.1 169 40.8
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 3.1e-34 149.1 170 42.9
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 3.1e-34 149.1 170 42.9
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 4.1e-34 148.7 169 44.4
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 4.1e-34 148.7 169 42.6
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 4.1e-34 148.7 171 40.9
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 4.1e-34 148.7 171 40.9
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 4.1e-34 148.7 169 43.8
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 5.4e-34 148.3 170 44.7
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 9.2e-34 147.5 169 42.0
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 9.2e-34 147.5 169 44.4
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 1.2e-33 147.1 170 44.1
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 1.2e-33 147.1 206 35.4
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 1.6e-33 146.7 170 44.7
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 2.0e-33 146.4 169 41.4
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 2.0e-33 146.4 169 43.2
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 4.5e-33 145.2 169 40.2
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 4.5e-33 145.2 171 45.0
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 5.9e-33 144.8 169 40.2
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 1.0e-32 144.1 169 42.6
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 1.3e-32 143.7 169 39.6
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 2.3e-32 142.9 169 41.4
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 2.9e-32 142.5 169 39.6
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 3.9e-32 142.1 169 39.6
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 3.9e-32 142.1 169 39.6
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.1e-31 140.6 169 39.1
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 1.1e-31 140.6 169 40.8
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 1.5e-31 140.2 171 41.5
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 1.5e-31 140.2 169 39.1
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 4.3e-31 138.7 205 36.1
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 7.3e-31 137.9 174 42.0
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 7.3e-31 137.9 169 39.1
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 9.5e-31 137.5 154 44.2
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 2.1e-30 136.3 169 38.5
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 2.8e-30 136.0 169 37.9
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 2.8e-30 136.0 169 38.5
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 3.6e-30 135.6 138 44.9
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 4.7e-30 135.2 169 39.1
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 6.1e-30 134.8 169 37.9
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 1.4e-29 133.7 169 37.9
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 1.8e-29 133.3 169 37.9
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 5.2e-29 131.7 169 38.5
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 5.2e-29 131.7 202 35.6
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 1.2e-28 130.6 185 38.9
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 2.0e-28 129.8 138 45.7
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 5.8e-28 128.3 173 37.6
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 3.7e-27 125.6 166 35.5
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 3.7e-27 125.6 190 33.7
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 4.9e-27 125.2 194 34.5
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 6.4e-27 124.8 156 38.5
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 1.1e-26 124.0 168 39.9
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 1.1e-26 124.0 191 35.6
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 2.4e-26 122.9 146 39.0
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 4.1e-26 122.1 123 42.3
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 3.5e-25 119.0 183 32.8
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 4.6e-25 118.6 141 39.7
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 6.0e-25 118.2 189 33.9
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 7.8e-25 117.9 156 35.9
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 1.0e-24 117.5 191 33.5
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 2.3e-24 116.3 238 28.2
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 6.6e-24 114.8 174 33.9
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 1.5e-23 113.6 150 36.7
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 3.3e-23 112.5 190 34.7
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 7.3e-23 111.3 110 45.5
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 2.1e-22 109.8 175 37.7
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 3.6e-22 109.0 104 49.0
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 3.1e-21 105.9 169 33.1
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 8.9e-21 104.4 169 34.9
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 2.0e-20 103.2 137 35.0
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 1.2e-14 84.0 98 40.8
SEGI_34722 Sequoiadendron giganteum HOM05D001775 ORTHO05D006205 2.6e-12 76.3 54 64.8
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 5.8e-12 75.1 152 30.3
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 9.9e-12 74.3 102 35.3
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 2.2e-11 73.2 98 39.8
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 6.0e-09 65.1 51 49.0
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 1.0e-08 64.3 94 39.4
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 1.2e-06 57.4 72 37.5


User provided reference genes

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