Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0015 Marchantia polymorpha HOM05D007103 ORTHO05D008948 1.2e-267 926.0 487 100.0
Pp3c6_26300 Physcomitrium patens HOM05D007103 ORTHO05D008948 1.0e-114 417.9 500 55.8
Pp3c5_2140 Physcomitrium patens HOM05D007103 ORTHO05D008948 4.9e-112 409.1 505 52.7
ATR0618G149 Amborella trichopoda HOM05D007103 ORTHO05D008948 1.2e-102 377.9 485 48.5
SMO358G0481 Selaginella moellendorffii HOM05D007103 ORTHO05D008948 4.7e-99 365.9 484 49.6
TAR371G1171 Trochodendron aralioides HOM05D007103 ORTHO05D008948 3.7e-96 356.3 494 47.6
Haze_01571 Corylus avellana HOM05D007103 ORTHO05D008948 1.1e-95 354.8 495 47.1
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 1.1e-95 354.8 497 47.9
GSVIVG01010248001 Vitis vinifera HOM05D007103 ORTHO05D008948 1.9e-95 354.0 493 46.5
Cfa015108 Carpinus fangiana HOM05D007103 ORTHO05D008948 5.1e-93 345.9 481 46.4
Manes.10G065901 Manihot esculenta HOM05D007103 ORTHO05D008948 4.3e-92 342.8 486 46.9
SEGI_34932 Sequoiadendron giganteum HOM05D007103 ORTHO05D008948 4.3e-92 342.8 321 57.6
THA.LOC104805941 Tarenaya hassleriana HOM05D007103 ORTHO05D008948 7.3e-92 342.0 492 45.9
MBI06_g12320_MAGBIO Magnolia biondii HOM05D007103 ORTHO05D008948 2.8e-91 340.1 328 55.5
Nn3g18722 Nelumbo nucifera HOM05D007103 ORTHO05D008948 5.2e-90 335.9 320 55.6
QL03p041867 Quercus lobata HOM05D007103 ORTHO05D008948 1.3e-88 331.3 474 47.7
Dinv06214 Davidia involucrata HOM05D007103 ORTHO05D008948 2.2e-88 330.5 482 47.1
HPP92_022082 Vanilla planifolia HOM05D007103 ORTHO05D008948 8.4e-88 328.6 489 44.2
Prupe.1G342500 Prunus persica HOM05D007103 ORTHO05D008948 3.2e-87 326.6 497 45.3
MELO3C005211.2 Cucumis melo HOM05D007103 ORTHO05D008948 6.0e-86 322.4 507 43.6
Sed0022925 Sechium edule HOM05D007103 ORTHO05D008948 7.8e-86 322.0 491 44.2
COL.COLO4_27515 Corchorus olitorius HOM05D007103 ORTHO05D008948 2.3e-85 320.5 469 43.9
CsaV3_5G017430 Cucumis sativus L. HOM05D007103 ORTHO05D008948 2.3e-85 320.5 501 43.7
HanXRQChr14g0446891 Helianthus annuus HOM05D007103 ORTHO05D008948 2.3e-85 320.5 482 44.4
CANSAT78G0644 Cannabis sativa HOM05D007103 ORTHO05D008948 3.0e-85 320.1 481 45.9
CiPaw.05G161900 Carya illinoinensis HOM05D007103 ORTHO05D008948 2.5e-84 317.0 318 54.4
CDE08G0078 Ceratophyllum demersum HOM05D007103 ORTHO05D008948 2.5e-84 317.0 481 44.1
RcHm_v2.0_Chr4g0446051 Rosa chinensis HOM05D007103 ORTHO05D008948 4.7e-83 312.8 493 43.8
Thecc.02G296200 Theobroma cacao HOM05D007103 ORTHO05D008948 1.4e-82 311.2 476 43.5
Glyma.05G135400 Glycine max HOM05D007103 ORTHO05D008948 1.8e-82 310.8 481 45.7
Lj3A854G74 Lonicera japonica HOM05D007103 ORTHO05D008948 4.0e-82 309.7 491 44.0
arahy.Tifrunner.gnm1.ann1.U7H2Z0 Arachis hypogaea HOM05D007103 ORTHO05D008948 6.9e-82 308.9 482 44.6
AL5G11410 Arabidopsis lyrata HOM05D007103 ORTHO05D008948 9.0e-82 308.5 492 41.1
arahy.Tifrunner.gnm1.ann1.CDY64E Arachis hypogaea HOM05D007103 ORTHO05D008948 2.6e-81 307.0 482 45.4
CSS0049146 Camellia sinensis var. sinensis HOM05D007103 ORTHO05D008948 3.4e-81 306.6 487 41.1
PSO478G2004 Papaver somniferum HOM05D007103 ORTHO05D008948 3.4e-81 306.6 491 45.0
C09p30690 Brassica napus HOM05D007103 ORTHO05D008948 5.8e-81 305.8 486 44.2
BcaC04g21529 Brassica carinata HOM05D007103 ORTHO05D008948 7.6e-81 305.4 481 44.3
Eucgr.B02623 Eucalyptus grandis HOM05D007103 ORTHO05D008948 1.3e-80 304.7 491 46.0
MD13G1010500 Malus domestica HOM05D007103 ORTHO05D008948 1.3e-80 304.7 491 44.2
Gohir.A01G145152 Gossypium hirsutum HOM05D007103 ORTHO05D008948 1.7e-80 304.3 494 42.5
Gohir.D01G137900 Gossypium hirsutum HOM05D007103 ORTHO05D008948 2.9e-80 303.5 486 41.8
Gorai.002G168100 Gossypium raimondii HOM05D007103 ORTHO05D008948 2.9e-80 303.5 494 43.7
BraA09t37988Z Brassica rapa HOM05D007103 ORTHO05D008948 4.9e-80 302.8 482 43.6
BolC9t55934H Brassica oleracea HOM05D007103 ORTHO05D008948 8.4e-80 302.0 493 44.0
AagrBONN_evm.TU.Sc2ySwM_368.3256 Anthoceros agrestis HOM05D007103 ORTHO05D008948 1.1e-79 301.6 305 58.0
Sabra08G0108900 Salix brachista HOM05D007103 ORTHO05D008948 2.4e-79 300.4 471 43.1
AT2G02148 Arabidopsis thaliana HOM05D007103 ORTHO05D008948 5.4e-79 299.3 483 42.0
A09p23820 Brassica napus HOM05D007103 ORTHO05D008948 7.1e-79 298.9 484 44.2
Carub.0005s0121 Capsella rubella HOM05D007103 ORTHO05D008948 7.1e-79 298.9 479 41.8
BcaB07g30707 Brassica carinata HOM05D007103 ORTHO05D008948 6.0e-78 295.8 482 43.4
ClCG01G007020 Citrullus lanatus HOM05D007103 ORTHO05D008948 1.3e-77 294.7 331 49.2
Aa31LG2G7810 Aethionema arabicum HOM05D007103 ORTHO05D008948 2.3e-77 293.9 485 41.2
Rhsim04G0168800 Rhododendron simsii HOM05D007103 ORTHO05D008948 8.7e-77 292.0 539 40.8
Sp2g13560 Schrenkiella parvula HOM05D007103 ORTHO05D008948 1.1e-76 291.6 482 41.7
Lsat_1_v5_gn_3_27560 Lactuca sativa HOM05D007103 ORTHO05D008948 5.6e-76 289.3 482 44.4
CARHR144820 Cardamine hirsuta HOM05D007103 ORTHO05D008948 9.6e-76 288.5 483 41.4
PGR044G1063 Punica granatum HOM05D007103 ORTHO05D008948 3.6e-75 286.6 490 42.0
Ciclev10005118m.g Citrus clementina HOM05D007103 ORTHO05D008948 4.8e-75 286.2 419 47.7
Lalb_Chr13g0293061 Lupinus albus HOM05D007103 ORTHO05D008948 4.8e-75 286.2 480 42.9
Lj4g0001083 Lotus japonicus HOM05D007103 ORTHO05D008948 8.1e-75 285.4 467 44.5
Thhalv10004194m.g Eutrema salsugineum HOM05D007103 ORTHO05D008948 6.9e-74 282.3 483 42.9
Actinidia32355 Actinidia chinensis HOM05D007103 ORTHO05D008948 1.2e-73 281.6 295 51.5
MSTRG.2093 Avicennia marina HOM05D007103 ORTHO05D008948 1.2e-73 281.6 494 41.9
Ca_18212_v3 Cicer arietinum L. HOM05D007103 ORTHO05D008948 4.5e-73 279.6 469 44.3
Psat7g086680 Pisum sativum HOM05D007103 ORTHO05D008948 4.5e-73 279.6 470 44.7
FAN07G2615 Fragaria x ananassa HOM05D007103 ORTHO05D008948 5.8e-73 279.3 502 40.8
unitig_8.g4025 Utricularia gibba HOM05D007103 ORTHO05D008948 7.6e-73 278.9 468 40.6
Aqoxy3G00022 Aquilegia oxysepala HOM05D007103 ORTHO05D008948 1.3e-72 278.1 417 45.3
FAN12G1264 Fragaria x ananassa HOM05D007103 ORTHO05D008948 1.3e-72 278.1 486 41.4
FAN17G1256 Fragaria x ananassa HOM05D007103 ORTHO05D008948 1.3e-72 278.1 486 41.2
TPR.G34765 Trifolium pratense HOM05D007103 ORTHO05D008948 1.3e-72 278.1 474 43.5
Potri.008G143700 Populus trichocarpa HOM05D007103 ORTHO05D008948 2.9e-72 276.9 407 43.0
vmacro08589 Vaccinium macrocarpon HOM05D007103 ORTHO05D008948 2.9e-72 276.9 350 48.0
Migut.E00576 Erythranthe guttata HOM05D007103 ORTHO05D008948 6.4e-72 275.8 515 39.2
SGA_v2.0_scaffold127G33990 Striga asiatica HOM05D007103 ORTHO05D008948 6.4e-72 275.8 472 42.2
Glyma.08G090600 Glycine max HOM05D007103 ORTHO05D008948 4.2e-71 273.1 416 44.5
CAN.G458.2 Capsicum annuum HOM05D007103 ORTHO05D008948 5.4e-71 272.7 414 42.8
DCAR_030327 Daucus carota HOM05D007103 ORTHO05D008948 5.4e-71 272.7 491 39.7
Sc03g0005470 Simmondsia chinensis HOM05D007103 ORTHO05D008948 7.1e-71 272.3 454 42.5
CBR_g70721 Chara braunii HOM05D007103 ORTHO05D008948 1.6e-70 271.2 432 42.8
AUR62003469 Chenopodium quinoa HOM05D007103 ORTHO05D008948 1.6e-70 271.2 453 42.8
Ciclev10010767m.g Citrus clementina HOM05D007103 ORTHO05D008948 1.6e-70 271.2 254 56.7
Peaxi162Scf00329g00938 Petunia axillaris HOM05D007103 ORTHO05D008948 2.1e-70 270.8 483 40.2
Phvul.002G186800 Phaseolus vulgaris HOM05D007103 ORTHO05D008948 4.6e-70 269.6 343 47.5
Nitab4.5_0007973g0020 Nicotiana tabacum HOM05D007103 ORTHO05D008948 1.8e-69 267.7 481 38.0
Nitab4.5_0000129g0430 Nicotiana tabacum HOM05D007103 ORTHO05D008948 8.7e-69 265.4 483 39.3
Sopen04g003720 Solanum pennellii HOM05D007103 ORTHO05D008948 1.1e-68 265.0 487 40.2
Solyc04g008560.3 Solanum lycopersicum HOM05D007103 ORTHO05D008948 1.9e-68 264.2 487 40.0
PGSC0003DMG400031375 Solanum tuberosum HOM05D007103 ORTHO05D008948 2.5e-68 263.8 481 39.7
FvH4_4g36300 Fragaria vesca HOM05D007103 ORTHO05D008948 8.1e-67 258.8 331 45.3
ECA246G2851 Erigeron canadensis HOM05D007103 ORTHO05D008948 9.0e-66 255.4 475 38.3
Zm00001eb228800 Zea mays HOM05D007103 ORTHO05D008948 9.0e-66 255.4 416 43.0
FAN22G0934 Fragaria x ananassa HOM05D007103 ORTHO05D008948 4.5e-65 253.1 312 45.8
PSO017G4620 Papaver somniferum HOM05D007103 ORTHO05D008948 4.5e-65 253.1 401 42.1
BcaB07g30709 Brassica carinata HOM05D007103 ORTHO05D008948 2.4e-63 247.3 322 45.7
VMungo0251G2627 Vigna mungo HOM05D007103 ORTHO05D008948 1.3e-61 241.5 389 39.3
EL10Ac6g15409 Beta vulgaris HOM05D007103 ORTHO05D008948 5.1e-61 239.6 529 36.1
AUR62017776 Chenopodium quinoa HOM05D007103 ORTHO05D008948 7.4e-60 235.7 428 42.5
SalBow2G1702 Salvia bowleyana HOM05D007103 ORTHO05D008948 1.9e-52 211.1 271 44.6
Pp3c6_29570 Physcomitrium patens HOM05D007103 ORTHO05D008948 6.9e-50 202.6 186 60.8
Cpa.g.sc2.105 Carica papaya HOM05D007103 ORTHO05D008948 2.3e-45 187.6 217 47.5
Actinidia25204 Actinidia chinensis HOM05D007103 ORTHO05D008948 3.0e-45 187.2 151 58.9
Atru.chr11.1054 Acer truncatum HOM05D007103 ORTHO05D008948 8.8e-37 159.1 325 36.9
Medtr5g010860 Medicago truncatula HOM05D007103 ORTHO05D008948 3.2e-31 140.6 156 49.4
Actinidia31381 Actinidia chinensis HOM05D007103 ORTHO05D008948 5.0e-16 90.1 428 30.8
Hund18263 Selenicereus undatus HOM05D007103 ORTHO05D008948 1.5e-07 62.0 211 31.8


User provided reference genes

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