Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.S095221 Manihot esculenta HOM05D007132 ORTHO05D009120 1.7e-226 788.9 371 100.0
Potri.009G025400 Populus trichocarpa HOM05D007132 ORTHO05D009120 1.8e-151 539.7 371 70.6
Sabra09G0016800 Salix brachista HOM05D007132 ORTHO05D009120 1.3e-149 533.5 369 70.2
Potri.001G233200 Populus trichocarpa HOM05D007132 ORTHO05D009120 1.6e-147 526.6 369 70.2
Atru.chr8.2638 Acer truncatum HOM05D007132 ORTHO05D009120 1.6e-144 516.5 375 68.8
Thecc.09G252800 Theobroma cacao HOM05D007132 ORTHO05D009120 4.8e-144 515.0 370 68.6
TWI75G0244 Tripterygium wilfordii HOM05D007132 ORTHO05D009120 4.8e-144 515.0 338 73.1
VMungo1215G2638 Vigna mungo HOM05D007132 ORTHO05D009120 4.8e-144 515.0 337 70.9
CiPaw.11G075400 Carya illinoinensis HOM05D007132 ORTHO05D009120 6.3e-144 514.6 330 72.4
Ciclev10031829m.g Citrus clementina HOM05D007132 ORTHO05D009120 8.2e-144 514.2 381 67.5
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 4.1e-143 511.9 371 68.5
Cfa012869 Carpinus fangiana HOM05D007132 ORTHO05D009120 3.4e-142 508.8 345 69.9
Lj2g0003748 Lotus japonicus HOM05D007132 ORTHO05D009120 4.5e-142 508.4 338 71.6
Gohir.D09G105701 Gossypium hirsutum HOM05D007132 ORTHO05D009120 7.7e-142 507.7 371 67.7
Gorai.006G123100 Gossypium raimondii HOM05D007132 ORTHO05D009120 7.7e-142 507.7 371 67.7
Gohir.A09G109100 Gossypium hirsutum HOM05D007132 ORTHO05D009120 1.3e-141 506.9 371 67.1
PGR042G0795 Punica granatum HOM05D007132 ORTHO05D009120 8.5e-141 504.2 331 73.1
Duzib168G0014 Durio zibethinus HOM05D007132 ORTHO05D009120 1.1e-140 503.8 328 73.5
Glyma.11G089600 Glycine max HOM05D007132 ORTHO05D009120 2.5e-140 502.7 342 70.2
CANSAT11G0857 Cannabis sativa HOM05D007132 ORTHO05D009120 4.2e-140 501.9 329 72.0
Sopen08g024160 Solanum pennellii HOM05D007132 ORTHO05D009120 7.2e-140 501.1 361 66.8
COL.COLO4_33243 Corchorus olitorius HOM05D007132 ORTHO05D009120 9.4e-140 500.7 346 70.5
vmacro00083 Vaccinium macrocarpon HOM05D007132 ORTHO05D009120 1.2e-139 500.4 374 65.5
Actinidia32785 Actinidia chinensis HOM05D007132 ORTHO05D009120 1.6e-139 500.0 329 71.1
MBI04_g06282_MAGBIO Magnolia biondii HOM05D007132 ORTHO05D009120 4.6e-139 498.4 345 70.1
arahy.Tifrunner.gnm1.ann1.63YFX7 Arachis hypogaea HOM05D007132 ORTHO05D009120 2.3e-138 496.1 349 70.2
arahy.Tifrunner.gnm1.ann1.WE0KUF Arachis hypogaea HOM05D007132 ORTHO05D009120 2.3e-138 496.1 349 70.2
Nitab4.5_0004157g0010 Nicotiana tabacum HOM05D007132 ORTHO05D009120 2.3e-138 496.1 368 68.2
MD05G1209900 Malus domestica HOM05D007132 ORTHO05D009120 3.0e-138 495.7 332 69.3
PGSC0003DMG400001970 Solanum tuberosum HOM05D007132 ORTHO05D009120 3.0e-138 495.7 364 65.7
Solyc08g075510.4 Solanum lycopersicum HOM05D007132 ORTHO05D009120 5.1e-138 495.0 361 65.9
Eucgr.E01138 Eucalyptus grandis HOM05D007132 ORTHO05D009120 2.0e-137 493.0 335 69.6
CAN.G1026.1 Capsicum annuum HOM05D007132 ORTHO05D009120 2.5e-137 492.7 371 64.7
TPR.G5247 Trifolium pratense HOM05D007132 ORTHO05D009120 3.3e-137 492.3 336 68.5
EL10Ac2g04081 Beta vulgaris HOM05D007132 ORTHO05D009120 6.3e-136 488.0 325 70.8
Medtr5g025190 Medicago truncatula HOM05D007132 ORTHO05D009120 1.4e-135 486.9 336 68.2
Psat2g145880 Pisum sativum HOM05D007132 ORTHO05D009120 1.8e-135 486.5 327 69.7
BraA06t25207Z Brassica rapa HOM05D007132 ORTHO05D009120 3.1e-135 485.7 333 69.4
AUR62009339 Chenopodium quinoa HOM05D007132 ORTHO05D009120 6.9e-135 484.6 324 70.7
Nn1g09371 Nelumbo nucifera HOM05D007132 ORTHO05D009120 1.2e-134 483.8 377 63.4
Cc08_g05480 Coffea canephora HOM05D007132 ORTHO05D009120 2.0e-134 483.0 358 65.1
A06p21200 Brassica napus HOM05D007132 ORTHO05D009120 2.6e-134 482.6 335 68.4
CARHR154210 Cardamine hirsuta HOM05D007132 ORTHO05D009120 5.9e-134 481.5 333 67.0
DCAR_028364 Daucus carota HOM05D007132 ORTHO05D009120 5.9e-134 481.5 376 62.5
Thhalv10002595m.g Eutrema salsugineum HOM05D007132 ORTHO05D009120 5.9e-134 481.5 331 68.9
MSTRG.1761 Avicennia marina HOM05D007132 ORTHO05D009120 2.2e-133 479.6 325 67.1
BcaB01g01051 Brassica carinata HOM05D007132 ORTHO05D009120 2.9e-133 479.2 334 68.0
CDE02G3577 Ceratophyllum demersum HOM05D007132 ORTHO05D009120 2.9e-133 479.2 332 68.1
Lj8A344T21 Lonicera japonica HOM05D007132 ORTHO05D009120 3.8e-133 478.8 388 62.1
Lj8C1T2 Lonicera japonica HOM05D007132 ORTHO05D009120 6.5e-133 478.0 388 61.9
CSS0020867 Camellia sinensis var. sinensis HOM05D007132 ORTHO05D009120 8.5e-133 477.6 331 68.9
BolC3t19289H Brassica oleracea HOM05D007132 ORTHO05D009120 1.4e-132 476.9 335 67.5
Oeu046789.1 Olea europaea HOM05D007132 ORTHO05D009120 1.9e-132 476.5 364 62.9
FvH4_3g16420 Fragaria vesca HOM05D007132 ORTHO05D009120 4.2e-132 475.3 330 69.1
SalBow8G0736 Salvia bowleyana HOM05D007132 ORTHO05D009120 4.2e-132 475.3 324 67.9
Nitab4.5_0000030g0380 Nicotiana tabacum HOM05D007132 ORTHO05D009120 5.5e-132 474.9 368 66.3
Sp2g03890 Schrenkiella parvula HOM05D007132 ORTHO05D009120 7.2e-132 474.6 335 66.6
RcHm_v2.0_Chr5g0027441 Rosa chinensis HOM05D007132 ORTHO05D009120 1.2e-131 473.8 324 69.8
Carub.0005s1173 Capsella rubella HOM05D007132 ORTHO05D009120 2.7e-131 472.6 329 68.1
Aqoxy3G02733 Aquilegia oxysepala HOM05D007132 ORTHO05D009120 3.6e-131 472.2 337 66.5
C03p70370 Brassica napus HOM05D007132 ORTHO05D009120 3.6e-131 472.2 333 67.0
Aa31LG9G15710 Aethionema arabicum HOM05D007132 ORTHO05D009120 7.9e-131 471.1 333 67.9
QL12p004376 Quercus lobata HOM05D007132 ORTHO05D009120 5.1e-130 468.4 426 58.2
AL5G24560 Arabidopsis lyrata HOM05D007132 ORTHO05D009120 8.8e-130 467.6 332 67.2
Peaxi162Scf00053g00715 Petunia axillaris HOM05D007132 ORTHO05D009120 2.6e-129 466.1 376 62.0
PSO541G5430 Papaver somniferum HOM05D007132 ORTHO05D009120 3.3e-129 465.7 330 67.3
FAN25G2365 Fragaria x ananassa HOM05D007132 ORTHO05D009120 5.7e-129 464.9 338 66.9
AT3G45880 Arabidopsis thaliana HOM05D007132 ORTHO05D009120 7.4e-129 464.5 333 68.8
Lsat_1_v5_gn_6_15181 Lactuca sativa HOM05D007132 ORTHO05D009120 7.4e-129 464.5 331 67.4
FAN11G4000 Fragaria x ananassa HOM05D007132 ORTHO05D009120 1.3e-128 463.8 338 66.9
HanXRQChr12g0382251 Helianthus annuus HOM05D007132 ORTHO05D009120 1.1e-127 460.7 321 66.7
SGA_v2.0_scaffold111G31350 Striga asiatica HOM05D007132 ORTHO05D009120 2.9e-125 452.6 363 60.3
Sc01g0005800 Simmondsia chinensis HOM05D007132 ORTHO05D009120 1.9e-124 449.9 309 69.9
AUR62023023 Chenopodium quinoa HOM05D007132 ORTHO05D009120 4.2e-124 448.7 324 67.0
AUR62043353 Chenopodium quinoa HOM05D007132 ORTHO05D009120 4.2e-124 448.7 324 67.0
ATR0568G089 Amborella trichopoda HOM05D007132 ORTHO05D009120 9.4e-124 447.6 354 61.6
BcaC01g01945 Brassica carinata HOM05D007132 ORTHO05D009120 1.2e-118 430.6 307 66.4
THA.LOC104798521 Tarenaya hassleriana HOM05D007132 ORTHO05D009120 5.5e-116 421.8 331 61.0
Haze_08441 Corylus avellana HOM05D007132 ORTHO05D009120 2.7e-115 419.5 286 68.9
unitig_46.g18229 Utricularia gibba HOM05D007132 ORTHO05D009120 2.7e-115 419.5 329 61.7
Phvul.002G120400 Phaseolus vulgaris HOM05D007132 ORTHO05D009120 1.0e-114 417.5 281 68.7
Prupe.4G147600 Prunus persica HOM05D007132 ORTHO05D009120 1.4e-114 417.2 283 68.6
Hund11034 Selenicereus undatus HOM05D007132 ORTHO05D009120 7.5e-113 411.4 285 69.5
SEGI_38459 Sequoiadendron giganteum HOM05D007132 ORTHO05D009120 1.7e-112 410.2 327 60.2
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 2.2e-112 409.8 319 62.1
Lalb_Chr05g0215041 Lupinus albus HOM05D007132 ORTHO05D009120 1.8e-111 406.8 286 68.2
Os09g0483600 Oryza sativa ssp. japonica HOM05D007132 ORTHO05D009120 4.2e-108 395.6 336 57.1
Zm00001eb316510 Zea mays HOM05D007132 ORTHO05D009120 1.2e-107 394.0 338 58.9
Pp3c2_13200 Physcomitrium patens HOM05D007132 ORTHO05D009120 6.8e-106 388.3 342 55.8
SMO367G0267 Selaginella moellendorffii HOM05D007132 ORTHO05D009120 3.0e-98 362.8 342 54.4
Nitab4.5_0000898g0130 Nicotiana tabacum HOM05D007132 ORTHO05D009120 3.7e-96 355.9 270 65.2
Ah.10g035250 Amaranthus hybridus HOM05D001758 ORTHO05D005969 4.9e-96 355.5 284 62.3
PSO675G1526 Papaver somniferum HOM05D007132 ORTHO05D009120 1.2e-91 340.9 249 65.1
MD10G1196200 Malus domestica HOM05D007132 ORTHO05D009120 6.0e-70 268.9 163 72.4
Cc02_g31510 Coffea canephora HOM05D007132 ORTHO05D009120 3.0e-61 240.0 146 74.0
AagrBONN_evm.TU.Sc2ySwM_344.2529 Anthoceros agrestis HOM05D007132 ORTHO05D009120 1.8e-58 230.7 279 46.6
Sp5g15660 Schrenkiella parvula HOM05D007132 ORTHO05D009120 1.8e-58 230.7 274 48.2
TAR629G3242 Trochodendron aralioides HOM05D007132 ORTHO05D009120 2.0e-57 227.3 187 61.5
TAR629G3340 Trochodendron aralioides HOM05D007132 ORTHO05D009120 3.0e-53 213.4 118 76.3
GSVIVG01036861001 Vitis vinifera HOM05D007132 ORTHO05D009120 4.3e-52 209.5 121 73.6
MCO03G301 Micromonas commoda HOM05D007132 ORTHO05D009120 2.0e-49 200.7 350 35.7
Cfa022513 Carpinus fangiana HOM05D007132 ORTHO05D009120 4.0e-42 176.4 313 35.8
Migut.E01364 Erythranthe guttata HOM05D007132 ORTHO05D009120 7.6e-41 172.2 135 62.2
PRCOL_00004459 Prasinoderma coloniale HOM05D007132 ORTHO05D009120 1.5e-33 147.9 294 33.3
Rhsim11G0036100 Rhododendron simsii HOM05D007132 ORTHO05D009120 6.1e-30 136.0 120 60.0
Cre03.g175750 Chlamydomonas reinhardtii HOM05D007132 ORTHO05D009120 2.0e-25 120.9 245 33.1
Lalb_Chr05g0215031 Lupinus albus HOM05D007132 ORTHO05D009120 2.4e-18 97.4 55 78.2
Nitab4.5_0000480g0030 Nicotiana tabacum HOM05D007132 ORTHO05D009120 2.6e-17 94.0 87 57.5
FAN13G1029 Fragaria x ananassa HOM05D007132 ORTHO05D009181 4.5e-17 93.2 189 36.5
Haze_08440 Corylus avellana HOM05D000433 ORTHO05D000443 1.7e-16 91.3 45 88.9
CDE11G0272 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 5.0e-16 89.7 104 45.2
Psat2g145800 Pisum sativum HOM05D007132 ORTHO05D009120 3.2e-15 87.0 46 82.6
Medtr5g032230 Medicago truncatula HOM05D007132 ORTHO05D009120 7.2e-15 85.9 95 48.4
HPP92_017970 Vanilla planifolia HOM05D004419 ORTHO05D005480 1.5e-12 78.2 281 24.2
Pp3c17_10850 Physcomitrium patens HOM05D004419 ORTHO05D005480 5.7e-12 76.3 286 21.3
ECA233G0260 Erigeron canadensis HOM05D004419 ORTHO05D005480 9.7e-12 75.5 273 22.7
FAN02G3822 Fragaria x ananassa HOM05D007132 ORTHO05D009120 9.7e-12 75.5 91 47.3
HanXRQChr02g0056491 Helianthus annuus HOM05D004419 ORTHO05D005480 1.7e-11 74.7 274 23.7
Lsat_1_v5_gn_6_50061 Lactuca sativa HOM05D004419 ORTHO05D005480 2.2e-11 74.3 273 22.7
ATR0605G084 Amborella trichopoda HOM05D004419 ORTHO05D005480 2.8e-11 73.9 255 25.1
AagrBONN_evm.TU.Sc2ySwM_117.3437 Anthoceros agrestis HOM05D004419 ORTHO05D005480 4.8e-11 73.2 281 23.1
Ciclev10015488m.g Citrus clementina HOM05D004419 ORTHO05D005480 6.3e-11 72.8 284 23.9
TAR623G0092 Trochodendron aralioides HOM05D004419 ORTHO05D005480 6.3e-11 72.8 284 23.6
Ah.04g161770 Amaranthus hybridus HOM05D004419 ORTHO05D005480 1.8e-10 71.2 272 23.9
Aa31LG8G7630 Aethionema arabicum HOM05D004419 ORTHO05D005480 7.0e-10 69.3 288 22.6
Sed0001509 Sechium edule HOM05D004419 ORTHO05D005480 7.0e-10 69.3 285 23.2
CsaV3_1G042600 Cucumis sativus L. HOM05D004419 ORTHO05D005480 9.1e-10 68.9 284 23.2
Thecc.09G224700 Theobroma cacao HOM05D004419 ORTHO05D005480 9.1e-10 68.9 288 23.3
GSVIVG01025322001 Vitis vinifera HOM05D004419 ORTHO05D005480 1.2e-09 68.6 278 23.7
Ah.06g193530 Amaranthus hybridus HOM05D004419 ORTHO05D005480 1.6e-09 68.2 268 24.3
AT5G19840 Arabidopsis thaliana HOM05D004978 ORTHO05D005621 1.6e-09 68.2 148 27.7
Carub.0003s2077 Capsella rubella HOM05D004419 ORTHO05D005480 2.0e-09 67.8 284 21.8
Cpa.g.sc84.102 Carica papaya HOM05D004419 ORTHO05D005480 2.0e-09 67.8 275 23.3
MELO3C015209.2 Cucumis melo HOM05D004419 ORTHO05D005480 2.0e-09 67.8 279 23.3
CSS0021936 Camellia sinensis var. sinensis HOM05D004419 ORTHO05D005480 3.5e-09 67.0 275 23.3
Dinv36300 Davidia involucrata HOM05D004419 ORTHO05D005480 3.5e-09 67.0 278 23.4
Os08g0508500 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 3.5e-09 67.0 277 23.1
THA.LOC104816908 Tarenaya hassleriana HOM05D004419 ORTHO05D005480 4.5e-09 66.6 286 21.7
Os09g0489200 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 5.9e-09 66.2 283 22.3
CANSAT54G1224 Cannabis sativa HOM05D004419 ORTHO05D005480 7.7e-09 65.9 279 22.2
Prupe.6G015700 Prunus persica HOM05D004419 ORTHO05D005480 7.7e-09 65.9 279 22.9
Hma1.2p1_0143F.1_g064490 Hydrangea macrophylla HOM05D004419 ORTHO05D005480 1.0e-08 65.5 273 22.0
SMO364G0845 Selaginella moellendorffii HOM05D004419 ORTHO05D005480 1.0e-08 65.5 288 21.5
EL10Ac4g10313 Beta vulgaris HOM05D004419 ORTHO05D005480 1.3e-08 65.1 292 22.3
Nn7g36075 Nelumbo nucifera HOM05D004419 ORTHO05D005480 1.3e-08 65.1 284 22.5
vmacro12711 Vaccinium macrocarpon HOM05D004419 ORTHO05D005480 1.3e-08 65.1 303 24.1
Cc01_g04260 Coffea canephora HOM05D004419 ORTHO05D005480 1.7e-08 64.7 275 21.8
Mapoly0061s0019 Marchantia polymorpha HOM05D002457 ORTHO05D008732 2.9e-08 63.9 277 26.0
PRCOL_00006664 Prasinoderma coloniale HOM05D004419 ORTHO05D005480 3.8e-08 63.5 279 23.7
Lj3g0003248 Lotus japonicus HOM05D004419 ORTHO05D005480 6.5e-08 62.8 288 22.6
MD03G1020700 Malus domestica HOM05D004419 ORTHO05D005480 6.5e-08 62.8 279 21.9
Pp3c5_1010 Physcomitrium patens HOM05D004419 ORTHO05D005480 6.5e-08 62.8 140 27.9
SHI30509 Sapria himalayana HOM05D004419 ORTHO05D005480 6.5e-08 62.8 273 23.1
PSO384G0662 Papaver somniferum HOM05D004419 ORTHO05D005480 1.1e-07 62.0 284 22.2
Aqoxy2G00106 Aquilegia oxysepala HOM05D004419 ORTHO05D005480 3.2e-07 60.5 284 23.2
CBR_g68529 Chara braunii HOM05D004419 ORTHO05D005480 3.2e-07 60.5 307 22.5
Eucgr.J00814 Eucalyptus grandis HOM05D004419 ORTHO05D005480 7.2e-07 59.3 285 22.5
Rhsim11G0036300 Rhododendron simsii HOM05D000007 ORTHO05D000039 4.7e-06 56.6 32 65.6
Rhsim11G0036200 Rhododendron simsii HOM05D007132 ORTHO05D009120 6.1e-06 56.2 81 40.7


User provided reference genes

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