Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 8.1e-97 359.0 171 100.0
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 7.9e-68 262.7 165 70.9
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.1e-66 258.8 165 70.3
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 4.3e-66 256.9 168 69.0
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 9.7e-66 255.8 163 71.8
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 2.2e-65 254.6 168 68.5
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 6.3e-65 253.1 155 72.3
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 1.4e-64 251.9 163 69.9
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 6.9e-64 249.6 152 73.7
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 9.0e-64 249.2 154 73.4
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 2.0e-63 248.1 151 72.8
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 2.6e-63 247.7 163 71.2
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 5.9e-63 246.5 153 73.9
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 2.2e-62 244.6 160 70.0
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 2.2e-62 244.6 164 68.9
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 2.2e-62 244.6 160 70.6
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 2.2e-62 244.6 160 70.6
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 2.9e-62 244.2 153 73.2
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 3.8e-62 243.8 165 68.5
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 1.1e-61 242.3 156 71.2
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 1.1e-61 242.3 156 71.2
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.1e-61 242.3 160 70.0
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.1e-61 242.3 152 72.4
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 2.5e-61 241.1 163 69.9
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 5.5e-61 240.0 157 70.7
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 5.5e-61 240.0 163 69.9
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 5.5e-61 240.0 160 71.9
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 5.5e-61 240.0 154 72.7
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 1.2e-60 238.8 153 71.9
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.2e-60 238.8 154 70.8
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 1.6e-60 238.4 171 67.3
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.6e-60 238.4 171 67.3
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 1.6e-60 238.4 158 67.1
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.1e-60 238.0 171 67.3
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 2.7e-60 237.7 157 68.2
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 2.7e-60 237.7 158 69.6
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 3.6e-60 237.3 163 68.1
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 4.6e-60 236.9 153 71.2
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 7.9e-60 236.1 158 67.7
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 1.4e-59 235.3 162 67.3
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 1.4e-59 235.3 164 69.5
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 1.4e-59 235.3 168 64.9
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 2.3e-59 234.6 153 68.6
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 2.3e-59 234.6 153 68.6
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 5.1e-59 233.4 163 68.7
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 5.1e-59 233.4 163 69.3
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 5.1e-59 233.4 158 68.4
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 1.1e-58 232.3 163 68.1
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 1.5e-58 231.9 163 65.0
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 2.0e-58 231.5 163 68.7
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 2.5e-58 231.1 155 66.5
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.3e-58 230.7 156 69.9
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 4.3e-58 230.3 163 68.1
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 9.7e-58 229.2 163 67.5
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 2.2e-57 228.0 160 65.0
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 2.2e-57 228.0 153 69.9
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 3.7e-57 227.3 163 66.9
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 3.7e-57 227.3 163 66.9
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 3.7e-57 227.3 150 68.0
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 4.8e-57 226.9 158 65.2
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 6.3e-57 226.5 163 65.0
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 1.8e-56 224.9 160 65.0
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.5e-55 221.9 157 63.7
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 2.6e-55 221.1 153 66.0
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 2.6e-55 221.1 153 66.0
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 3.4e-55 220.7 159 64.8
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 3.4e-55 220.7 164 62.2
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 4.5e-55 220.3 153 65.4
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 5.9e-55 219.9 157 66.2
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 5.9e-55 219.9 157 66.2
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 2.2e-54 218.0 163 63.2
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 8.5e-54 216.1 153 65.4
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 1.1e-53 215.7 158 63.3
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 1.9e-53 214.9 164 61.0
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 2.5e-53 214.5 168 57.7
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 4.2e-53 213.8 163 60.7
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 2.1e-52 211.5 143 65.7
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 2.7e-52 211.1 160 61.9
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 6.1e-52 209.9 162 61.1
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 1.8e-51 208.4 143 65.0
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 2.3e-51 208.0 164 58.5
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.3e-51 208.0 154 63.0
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 6.7e-51 206.5 162 60.5
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 6.7e-51 206.5 162 60.5
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 6.7e-51 206.5 162 60.5
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 6.7e-51 206.5 162 60.5
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 8.8e-51 206.1 164 57.9
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.6e-50 204.5 154 62.3
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 4.4e-50 203.8 163 58.3
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 5.7e-50 203.4 157 57.3
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 5.7e-50 203.4 137 67.2
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 9.7e-50 202.6 170 56.5
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 9.7e-50 202.6 144 66.0
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 1.4e-48 198.7 153 60.8
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 1.4e-48 198.7 148 62.8
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 1.2e-47 195.7 155 61.3
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.2e-47 195.7 129 69.8
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 5.0e-46 190.3 159 58.5
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 1.1e-45 189.1 145 60.0
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 9.4e-45 186.0 130 64.6
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.6e-44 184.1 160 56.2
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 1.0e-43 182.6 170 57.6
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 5.2e-43 180.3 152 54.6
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 2.0e-42 178.3 121 69.4
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 4.4e-42 177.2 163 49.7
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 2.2e-41 174.9 137 58.4
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.8e-41 174.5 145 56.6
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 1.4e-40 172.2 131 63.4
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 5.3e-40 170.2 98 77.6
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 1.2e-39 169.1 165 52.1
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 5.9e-39 166.8 99 76.8
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 1.0e-38 166.0 132 56.8
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 1.3e-38 165.6 161 52.2
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 1.3e-38 165.6 137 55.5
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 6.5e-38 163.3 131 62.6
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 1.6e-36 158.7 161 47.8
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 3.6e-36 157.5 160 46.9
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 3.0e-35 154.5 95 71.6
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 2.6e-34 151.4 134 50.0
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 9.7e-34 149.4 104 60.6
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 3.1e-32 144.4 163 49.1
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 3.1e-32 144.4 163 49.1
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 9.1e-32 142.9 129 55.8
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 3.5e-31 141.0 134 49.3
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 1.9e-29 135.2 102 61.8
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 3.6e-28 131.0 100 61.0
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 1.3e-25 122.5 102 56.9
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 2.4e-24 118.2 91 61.5
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 5.4e-24 117.1 153 41.2
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 4.5e-23 114.0 99 52.5
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 1.7e-22 112.1 75 66.7
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 2.3e-22 111.7 56 82.1
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 6.6e-22 110.2 121 47.9
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 1.9e-21 108.6 84 60.7
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 9.5e-21 106.3 81 60.5
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 1.1e-16 92.8 59 71.2
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 3.1e-16 91.3 69 59.4
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 5.4e-16 90.5 65 66.2
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 7.0e-16 90.1 62 66.1
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 2.3e-14 85.1 64 65.6
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 6.6e-14 83.6 63 65.1
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 8.6e-14 83.2 56 66.1
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 1.1e-13 82.8 56 67.9
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 2.8e-12 78.2 64 57.8
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 3.6e-12 77.8 64 62.5
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 8.0e-12 76.6 67 50.7
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 9.8e-10 69.7 56 60.7
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 4.9e-09 67.4 69 52.2
MCO02G309 Micromonas commoda HOM05D004639 ORTHO05D005201 1.9e-08 65.5 157 30.6
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 1.7e-06 58.9 32 75.0
AagrBONN_evm.TU.Sc2ySwM_228.991 Anthoceros agrestis HOM05D004639 ORTHO05D005201 3.0e-06 58.2 79 41.8


User provided reference genes

Program Settings