Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 0.0e+00 1887.8 1025 100.0
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1525.4 1030 80.5
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1520.0 1030 80.5
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1519.2 1038 80.0
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1491.9 1027 77.9
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 0.0e+00 1488.8 1026 76.4
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1479.9 1066 77.0
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1471.1 1025 76.3
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1460.3 1026 75.3
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 0.0e+00 1459.9 1026 75.2
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 0.0e+00 1453.7 1027 75.7
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1437.6 1029 73.8
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1436.4 1030 73.9
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 0.0e+00 1436.4 1035 74.2
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 0.0e+00 1436.0 1030 74.4
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 0.0e+00 1435.6 1031 73.9
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 0.0e+00 1435.6 1027 73.9
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1433.3 1030 73.8
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 0.0e+00 1433.3 1030 73.8
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 0.0e+00 1431.4 1030 74.5
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 0.0e+00 1426.8 1029 74.2
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1424.5 1024 73.6
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 0.0e+00 1417.9 1061 72.5
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1414.4 1028 73.4
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 0.0e+00 1409.0 1028 73.3
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 0.0e+00 1406.3 1034 73.5
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 0.0e+00 1404.4 1026 72.8
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1395.6 1028 72.4
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 0.0e+00 1394.0 1030 72.4
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 0.0e+00 1390.9 1030 72.5
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1387.1 1019 72.6
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1382.5 1041 71.4
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 0.0e+00 1382.1 1029 72.1
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1381.7 1041 71.5
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 0.0e+00 1381.3 1025 72.8
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 0.0e+00 1377.8 1030 71.7
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 0.0e+00 1372.8 1026 71.0
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1372.5 1027 72.0
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1371.3 1012 71.3
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 0.0e+00 1371.3 1029 70.8
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1367.8 1024 72.1
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 0.0e+00 1367.1 984 73.1
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1366.3 1012 70.8
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1362.4 1002 71.9
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1359.7 1030 69.4
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 0.0e+00 1357.4 1026 71.7
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 0.0e+00 1354.0 1028 70.9
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1350.5 1030 71.5
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1350.1 1012 70.7
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 0.0e+00 1349.3 1032 70.1
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1343.2 1064 69.3
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1342.0 1039 69.1
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1341.3 1037 69.3
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 0.0e+00 1340.1 1033 68.8
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1338.9 1034 69.5
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 0.0e+00 1337.8 1036 69.1
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 0.0e+00 1335.5 1029 69.1
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1334.3 1029 69.0
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 0.0e+00 1333.5 1033 68.9
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1333.5 1025 68.5
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 0.0e+00 1330.9 1044 68.2
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 0.0e+00 1329.7 1033 68.2
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1329.3 1029 68.7
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 0.0e+00 1325.5 1033 68.0
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 0.0e+00 1324.7 1033 68.0
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1324.3 1026 69.2
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1324.3 1026 69.4
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1323.9 1025 68.3
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 0.0e+00 1323.1 1027 67.1
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1322.8 1028 68.3
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1312.7 1025 68.4
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 0.0e+00 1310.8 1029 68.1
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 0.0e+00 1310.0 1032 68.2
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1306.6 940 71.7
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1302.7 1076 65.7
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1302.7 1022 69.5
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 0.0e+00 1298.1 1028 67.6
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 0.0e+00 1297.7 1093 64.4
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 0.0e+00 1296.2 1028 69.4
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 0.0e+00 1293.5 1052 66.8
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1293.5 1030 68.7
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 0.0e+00 1291.9 1038 68.3
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1288.5 1027 68.4
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1282.3 1072 65.4
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1280.0 945 69.9
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 0.0e+00 1278.1 1041 66.5
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1275.0 947 68.6
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 0.0e+00 1273.8 1028 66.2
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1273.8 945 69.1
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 0.0e+00 1266.9 1031 66.7
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 0.0e+00 1265.8 1031 66.8
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1265.4 1025 67.2
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 0.0e+00 1258.8 902 74.9
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 0.0e+00 1254.6 956 68.0
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1251.1 1040 66.6
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1245.0 1025 65.9
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 0.0e+00 1239.2 1007 64.5
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 0.0e+00 1234.2 1032 66.2
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1200.3 794 78.8
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 0.0e+00 1196.0 1036 62.2
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1173.3 854 70.8
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 0.0e+00 1169.1 1083 59.8
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 0.0e+00 1164.4 787 77.4
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 0.0e+00 1147.5 954 62.4
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 0.0e+00 1138.6 788 75.8
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 0.0e+00 1130.2 1033 60.0
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 1.6e-298 1029.6 956 55.8
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 2.1e-298 1029.2 709 76.4
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 3.7e-295 1018.5 934 57.8
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 1.1e-294 1016.9 957 55.7
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 3.8e-292 1008.4 1032 51.4
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 2.7e-285 985.7 842 63.5
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 7.5e-280 967.6 943 54.8
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.2e-266 923.7 755 67.7
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 2.1e-258 896.3 651 72.7
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 1.1e-241 840.9 970 54.9
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 1.1e-238 830.9 963 48.1
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 5.4e-222 775.4 627 66.3
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 1.0e-220 771.2 563 68.7
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 4.8e-218 762.3 629 65.8
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 4.6e-205 719.2 638 63.0
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 3.9e-204 716.1 700 52.9
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 3.9e-196 689.5 601 59.9
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 3.7e-194 682.9 554 66.1
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 5.7e-187 659.1 1029 44.0
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 1.4e-169 601.3 571 56.4
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 4.4e-163 579.7 617 51.1
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 3.0e-156 557.0 581 57.7
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 6.4e-146 522.7 1017 34.5
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 2.9e-138 497.3 954 31.7
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 8.6e-135 485.7 319 79.6
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 3.7e-130 470.3 418 60.5
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 4.9e-114 416.8 382 62.3
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 1.1e-113 415.6 946 31.0
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 1.7e-111 408.3 289 74.0
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 3.1e-108 397.5 372 57.8
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 2.9e-106 391.0 276 74.6
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 6.4e-106 389.8 265 76.6
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 3.3e-102 377.5 570 43.7
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 1.3e-101 375.6 309 63.1
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 1.6e-101 375.2 276 69.9
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 9.0e-100 369.4 561 41.9
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 4.5e-99 367.1 411 48.4
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 2.7e-96 357.8 565 43.9
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 3.7e-93 347.4 277 68.6
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 6.3e-85 320.1 220 73.2
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.9e-81 308.5 299 60.2
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 6.3e-77 293.5 415 46.7
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.5e-75 288.9 588 34.9
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 1.5e-75 288.9 267 64.4
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 2.9e-74 284.6 244 60.2
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 5.5e-73 280.4 189 75.7
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 1.5e-70 272.3 426 43.9
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.3e-69 269.2 242 64.0
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 8.5e-66 256.5 219 58.4
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 1.4e-65 255.8 319 46.7
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 5.7e-62 243.8 429 42.9
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 2.6e-59 235.0 420 41.9
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.5e-57 229.2 225 57.3
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 1.7e-50 205.7 154 70.8
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 4.2e-49 201.1 163 67.5
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 1.2e-48 199.5 135 74.1
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 2.0e-46 192.2 195 54.9
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 1.0e-39 169.9 336 38.1
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.2e-37 162.2 186 54.8
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 1.8e-36 159.1 236 43.6
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 1.2e-35 156.4 124 64.5
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 1.6e-35 156.0 411 34.3
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 2.7e-35 155.2 92 79.3
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 3.5e-35 154.8 102 74.5
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 3.8e-34 151.4 140 60.7
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 6.6e-26 124.0 172 48.3
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.1e-25 123.2 74 78.4
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.1e-25 123.2 74 78.4
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 6.2e-24 117.5 122 52.5
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 1.8e-23 115.9 173 41.0
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 3.1e-23 115.2 79 72.2
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 6.8e-23 114.0 163 43.6
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 4.6e-19 101.3 72 70.8
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.7e-18 99.4 108 49.1
VMungo1215G2515 Vigna mungo HOM05D003801 ORTHO05D436020 3.3e-09 68.6 53 66.0
Phvul.003G243600 Phaseolus vulgaris HOM05D002898 ORTHO05D003424 5.2e-07 61.2 166 32.5
SEGI_22189 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 5.8e-06 57.8 65 47.7


User provided reference genes

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