Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G138300 Manihot esculenta HOM05D008285 ORTHO05D010431 2.0e-22 108.2 54 100.0
Nn031s41612 Nelumbo nucifera HOM05D008285 ORTHO05D010431 7.7e-19 96.3 53 88.7
Nn064s42214 Nelumbo nucifera HOM05D008285 ORTHO05D010431 7.7e-19 96.3 53 88.7
PGR111G0120 Punica granatum HOM05D008285 ORTHO05D010431 3.8e-18 94.0 53 86.8
Gohir.1Z049931 Gossypium hirsutum HOM05D008285 ORTHO05D010431 5.0e-18 93.6 51 88.2
Gohir.A02G134106 Gossypium hirsutum HOM05D008285 ORTHO05D010431 5.0e-18 93.6 51 88.2
Gorai.009G442800 Gossypium raimondii HOM05D008285 ORTHO05D010431 5.0e-18 93.6 51 88.2
Gohir.1Z049481 Gossypium hirsutum HOM05D008285 ORTHO05D010431 1.1e-17 92.4 51 88.2
Hma1.2p1_0859F.1_g229500 Hydrangea macrophylla HOM05D008285 ORTHO05D010431 1.1e-17 92.4 50 90.0
PGSC0003DMG400000878 Solanum tuberosum HOM05D008285 ORTHO05D010431 1.1e-17 92.4 52 88.5
ATCG01020 Arabidopsis thaliana HOM05D008285 ORTHO05D010431 1.5e-17 92.0 52 88.5
C09p40390 Brassica napus HOM05D008285 ORTHO05D010431 1.5e-17 92.0 52 88.5
BolSC29t60502H Brassica oleracea HOM05D008285 ORTHO05D010431 1.5e-17 92.0 52 88.5
BolSC35t60700H Brassica oleracea HOM05D008285 ORTHO05D010431 1.5e-17 92.0 52 88.5
BolSC44t60819H Brassica oleracea HOM05D008285 ORTHO05D010431 1.5e-17 92.0 52 88.5
BraSC103t45425Z Brassica rapa HOM05D008285 ORTHO05D010431 1.5e-17 92.0 52 88.5
BraSC138t45538Z Brassica rapa HOM05D008285 ORTHO05D010431 1.5e-17 92.0 52 88.5
BraSC25t45906Z Brassica rapa HOM05D008285 ORTHO05D010431 1.5e-17 92.0 52 88.5
BraSC59t46547Z Brassica rapa HOM05D008285 ORTHO05D010431 1.5e-17 92.0 52 88.5
Gohir.A01G140110 Gossypium hirsutum HOM05D008285 ORTHO05D010431 1.9e-17 91.7 51 86.3
Nn212s45209 Nelumbo nucifera HOM05D008285 ORTHO05D010431 1.9e-17 91.7 54 87.0
CSS0043912 Camellia sinensis var. sinensis HOM05D008285 ORTHO05D010431 5.5e-17 90.1 50 88.0
Nn8g41105 Nelumbo nucifera HOM05D008285 ORTHO05D010431 7.2e-17 89.7 53 83.0
BolC9t56809H Brassica oleracea HOM05D008285 ORTHO05D010431 9.5e-17 89.4 52 86.5
C02p28770 Brassica napus HOM05D008285 ORTHO05D010431 1.2e-16 89.0 52 84.6
BolC2t08924H Brassica oleracea HOM05D008285 ORTHO05D010431 1.2e-16 89.0 52 84.6
CARHR282410 Cardamine hirsuta HOM05D008285 ORTHO05D010431 1.2e-16 89.0 52 88.5
Gohir.A12G229600 Gossypium hirsutum HOM05D008285 ORTHO05D010431 1.2e-16 89.0 51 82.4
BolC9t56929H Brassica oleracea HOM05D008285 ORTHO05D010431 1.6e-16 88.6 52 84.6
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 1.6e-16 88.6 52 80.8
SalBow1G4672 Salvia bowleyana HOM05D008285 ORTHO05D010431 2.8e-16 87.8 50 86.0
SalBow1G6462 Salvia bowleyana HOM05D008285 ORTHO05D010431 2.8e-16 87.8 50 86.0
Nn1g08636 Nelumbo nucifera HOM05D008285 ORTHO05D010431 4.7e-16 87.0 53 81.1
DCAR_032534 Daucus carota HOM05D008285 ORTHO05D010431 6.1e-16 86.7 53 83.0
PSO548G0110 Papaver somniferum HOM05D008285 ORTHO05D010431 8.0e-16 86.3 50 88.0
RcHm_v2.0_CPg0502841 Rosa chinensis HOM05D008285 ORTHO05D010431 1.4e-15 85.5 47 89.4
HanXRQCPg0580381 Helianthus annuus HOM05D008285 ORTHO05D010431 3.0e-15 84.3 50 86.0
RcHm_v2.0_Chr4g0421191 Rosa chinensis HOM05D008285 ORTHO05D010431 6.8e-15 83.2 47 87.2
PSO063G2603 Papaver somniferum HOM05D008285 ORTHO05D010431 8.9e-15 82.8 52 78.8
BolC2t10592H Brassica oleracea HOM05D008285 ORTHO05D010431 1.2e-14 82.4 48 85.4
PSO339G5238 Papaver somniferum HOM05D008285 ORTHO05D010431 2.0e-14 81.6 52 76.9
Solyc03g013610.1 Solanum lycopersicum HOM05D008285 ORTHO05D010431 2.6e-14 81.3 52 80.8
CAN.G1045.12 Capsicum annuum HOM05D008285 ORTHO05D010431 9.8e-14 79.3 47 83.0
CAN.G1045.15 Capsicum annuum HOM05D008285 ORTHO05D010431 9.8e-14 79.3 47 83.0
CAN.G222.14 Capsicum annuum HOM05D008285 ORTHO05D010431 9.8e-14 79.3 47 83.0
CAN.G413.8 Capsicum annuum HOM05D008285 ORTHO05D010431 9.8e-14 79.3 47 83.0
CAN.G657.10 Capsicum annuum HOM05D008285 ORTHO05D010431 9.8e-14 79.3 47 83.0
CAN.G1431.2 Capsicum annuum HOM05D008285 ORTHO05D010431 2.8e-13 77.8 47 80.9
Lalb_Chr07g0191721 Lupinus albus HOM05D008285 ORTHO05D010431 2.8e-13 77.8 49 79.6
CAN.G965.8 Capsicum annuum HOM05D008285 ORTHO05D010431 4.9e-13 77.0 47 80.9
Nitab4.5_0015353g0010 Nicotiana tabacum HOM05D008285 ORTHO05D010431 8.3e-13 76.3 45 86.7
CAN.G8.24 Capsicum annuum HOM05D008285 ORTHO05D010431 1.4e-12 75.5 47 78.7
Medtr4g006140 Medicago truncatula HOM05D008285 ORTHO05D010431 1.4e-12 75.5 52 73.1
BolSC45t60913H Brassica oleracea HOM05D008285 ORTHO05D010431 1.8e-12 75.1 49 83.7
CAN.G1324.6 Capsicum annuum HOM05D008285 ORTHO05D010431 2.4e-12 74.7 47 78.7
CAN.G213.15 Capsicum annuum HOM05D008285 ORTHO05D010431 3.2e-12 74.3 47 78.7
SGA_v2.0_scaffold36G14477 Striga asiatica HOM05D008285 ORTHO05D010431 1.2e-11 72.4 46 78.3
CAN.G262.5 Capsicum annuum HOM05D008285 ORTHO05D010431 2.7e-11 71.2 53 73.6
Psat5g142800 Pisum sativum HOM05D008285 ORTHO05D010431 1.0e-10 69.3 46 73.9
Aqoxy1G03262 Aquilegia oxysepala HOM05D008285 ORTHO05D010431 1.7e-10 68.6 47 74.5
Potri.009G163200 Populus trichocarpa HOM05D008285 ORTHO05D010431 1.5e-09 65.5 52 63.5
Glyma.18G193100 Glycine max HOM05D008285 ORTHO05D010431 2.1e-08 61.6 52 57.7
BraSC58t46459Z Brassica rapa HOM05D067706 ORTHO05D010431 1.5e-06 55.5 51 58.8


User provided reference genes

Program Settings