Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G128104 Manihot esculenta HOM05D001398 ORTHO05D249570 2.4e-43 178.3 85 100.0
Manes.01G050733 Manihot esculenta HOM05D001398 ORTHO05D250925 1.3e-20 102.8 50 94.0
Manes.16G106300 Manihot esculenta HOM05D001398 ORTHO05D001467 9.4e-11 70.1 32 90.6
Manes.03G204450 Manihot esculenta HOM05D001398 ORTHO05D251076 2.1e-10 68.9 31 93.5
Duzib187G0051 Durio zibethinus HOM05D001398 ORTHO05D001467 7.9e-10 67.0 33 84.8
Gohir.D06G068100 Gossypium hirsutum HOM05D001398 ORTHO05D001467 7.9e-10 67.0 33 84.8
Gorai.010G079600 Gossypium raimondii HOM05D001398 ORTHO05D001467 7.9e-10 67.0 33 84.8
COL.COLO4_18267 Corchorus olitorius HOM05D001398 ORTHO05D001467 1.4e-09 66.2 33 84.8
Gohir.A06G069500 Gossypium hirsutum HOM05D001398 ORTHO05D001467 6.7e-09 63.9 33 81.8
Thecc.09G096700 Theobroma cacao HOM05D001398 ORTHO05D001467 1.1e-08 63.2 35 77.1
Cpa.g.sc78.48 Carica papaya HOM05D001398 ORTHO05D001467 3.3e-08 61.6 35 71.4
Ciclev10007247m.g Citrus clementina HOM05D001398 ORTHO05D001467 3.3e-08 61.6 33 72.7
MD15G1200900 Malus domestica HOM05D001398 ORTHO05D001467 9.7e-08 60.1 35 68.6
RcHm_v2.0_Chr2g0092351 Rosa chinensis HOM05D001398 ORTHO05D001467 9.7e-08 60.1 32 78.1
Sc08g0008160 Simmondsia chinensis HOM05D001398 ORTHO05D001467 9.7e-08 60.1 34 70.6
MD02G1069200 Malus domestica HOM05D001398 ORTHO05D001467 1.7e-07 59.3 35 68.6
Manes.16G076600 Manihot esculenta HOM05D001398 ORTHO05D001467 1.7e-07 59.3 32 68.8
Atru.chr7.1510 Acer truncatum HOM05D001398 ORTHO05D001467 2.2e-07 58.9 33 72.7
vmacro06263 Vaccinium macrocarpon HOM05D001398 ORTHO05D001467 2.2e-07 58.9 48 50.0
Actinidia29897 Actinidia chinensis HOM05D001398 ORTHO05D001467 3.7e-07 58.2 32 71.9
Oeu038832.1 Olea europaea HOM05D001398 ORTHO05D001467 3.7e-07 58.2 33 69.7
CiPaw.03G220900 Carya illinoinensis HOM05D001398 ORTHO05D001467 4.8e-07 57.8 32 71.9
Glyma.04G087300 Glycine max HOM05D001398 ORTHO05D001467 4.8e-07 57.8 37 67.6
Glyma.06G089000 Glycine max HOM05D001398 ORTHO05D001467 4.8e-07 57.8 37 67.6
Potri.006G234500 Populus trichocarpa HOM05D001398 ORTHO05D001467 4.8e-07 57.8 32 71.9
Rhsim03G0235500 Rhododendron simsii HOM05D001398 ORTHO05D001467 4.8e-07 57.8 36 63.9
Sabra06G0182900 Salix brachista HOM05D001398 ORTHO05D001467 4.8e-07 57.8 32 71.9
Cc06_g10810 Coffea canephora HOM05D001398 ORTHO05D001467 8.2e-07 57.0 32 68.8
COL.COLO4_21012 Corchorus olitorius HOM05D001398 ORTHO05D001467 8.2e-07 57.0 33 69.7
Eucgr.C03702 Eucalyptus grandis HOM05D001398 ORTHO05D001467 8.2e-07 57.0 32 71.9
PSO063G3976 Papaver somniferum HOM05D001398 ORTHO05D001467 8.2e-07 57.0 32 71.9
Potri.018G058300 Populus trichocarpa HOM05D001398 ORTHO05D001467 8.2e-07 57.0 32 68.8
Sabra18G0054700 Salix brachista HOM05D001398 ORTHO05D001467 8.2e-07 57.0 32 68.8
Prupe.7G216400 Prunus persica HOM05D001398 ORTHO05D001467 1.4e-06 56.2 32 71.9
Hund26303 Selenicereus undatus HOM05D001398 ORTHO05D001467 1.4e-06 56.2 35 65.7
THA.LOC104799183 Tarenaya hassleriana HOM05D001398 ORTHO05D001467 1.4e-06 56.2 33 66.7
CSS0003235 Camellia sinensis var. sinensis HOM05D001398 ORTHO05D001467 1.8e-06 55.8 33 69.7
CSS0037761 Camellia sinensis var. sinensis HOM05D001398 ORTHO05D001467 1.8e-06 55.8 33 69.7
Cfa003149 Carpinus fangiana HOM05D001398 ORTHO05D001467 1.8e-06 55.8 32 68.8
Haze_25854 Corylus avellana HOM05D001398 ORTHO05D001467 1.8e-06 55.8 32 68.8
Lj7C669G9 Lonicera japonica HOM05D001398 ORTHO05D001467 1.8e-06 55.8 54 48.1
Lalb_Chr08g0242861 Lupinus albus HOM05D001398 ORTHO05D001467 1.8e-06 55.8 32 75.0
Migut.J01077 Erythranthe guttata HOM05D001398 ORTHO05D001467 2.4e-06 55.5 34 64.7
Manes.03G057400 Manihot esculenta HOM05D001398 ORTHO05D001467 2.4e-06 55.5 32 62.5
Phvul.009G112800 Phaseolus vulgaris HOM05D001398 ORTHO05D001467 2.4e-06 55.5 33 72.7
QL02p040383 Quercus lobata HOM05D001398 ORTHO05D001467 2.4e-06 55.5 32 68.8
Dinv27948 Davidia involucrata HOM05D001398 ORTHO05D001467 3.1e-06 55.1 33 69.7
Medtr8g102160 Medicago truncatula HOM05D001398 ORTHO05D001467 3.1e-06 55.1 35 68.6
Nn8g39001 Nelumbo nucifera HOM05D001398 ORTHO05D001467 3.1e-06 55.1 33 66.7
PSO832G0273 Papaver somniferum HOM05D001398 ORTHO05D001467 3.1e-06 55.1 32 71.9
Psat7g018600 Pisum sativum HOM05D001398 ORTHO05D001467 3.1e-06 55.1 35 68.6
Actinidia30295 Actinidia chinensis HOM05D001398 ORTHO05D001467 4.1e-06 54.7 33 69.7
arahy.Tifrunner.gnm1.ann1.SU7RHA Arachis hypogaea HOM05D001398 ORTHO05D001467 4.1e-06 54.7 32 75.0
arahy.Tifrunner.gnm1.ann1.Z6S83C Arachis hypogaea HOM05D001398 ORTHO05D001467 4.1e-06 54.7 32 75.0
Lalb_Chr23g0269781 Lupinus albus HOM05D001398 ORTHO05D001467 4.1e-06 54.7 37 62.2
TPR.G12472 Trifolium pratense HOM05D001398 ORTHO05D001467 4.1e-06 54.7 32 71.9
TAR626G0298 Trochodendron aralioides HOM05D001398 ORTHO05D001467 4.1e-06 54.7 32 71.9
Ah.14g083480 Amaranthus hybridus HOM05D001398 ORTHO05D001467 5.3e-06 54.3 35 60.0
arahy.Tifrunner.gnm1.ann1.LQH9T0 Arachis hypogaea HOM05D001398 ORTHO05D001467 5.3e-06 54.3 54 48.1
CiPaw.07G201300 Carya illinoinensis HOM05D001398 ORTHO05D001467 5.3e-06 54.3 33 66.7
Lalb_Chr11g0064611 Lupinus albus HOM05D001398 ORTHO05D001467 5.3e-06 54.3 32 75.0
MBI04_g34115_MAGBIO Magnolia biondii HOM05D001398 ORTHO05D001467 5.3e-06 54.3 34 64.7
Nn6g35364 Nelumbo nucifera HOM05D001398 ORTHO05D001467 5.3e-06 54.3 32 68.8
Zm00001eb121520 Zea mays HOM05D001398 ORTHO05D001467 5.3e-06 54.3 32 65.6
Zm00001eb337240 Zea mays HOM05D001398 ORTHO05D001467 5.3e-06 54.3 32 65.6
Aqoxy7G01355 Aquilegia oxysepala HOM05D001398 ORTHO05D001467 6.9e-06 53.9 35 60.0
MSTRG.11680 Avicennia marina HOM05D001398 ORTHO05D001467 6.9e-06 53.9 32 65.6
CsaV3_2G001670 Cucumis sativus L. HOM05D001398 ORTHO05D001467 6.9e-06 53.9 39 59.0
ECA234G1144 Erigeron canadensis HOM05D001398 ORTHO05D001467 6.9e-06 53.9 32 71.9
SalBow6G1810 Salvia bowleyana HOM05D001398 ORTHO05D001467 6.9e-06 53.9 32 68.8
Sed0002808 Sechium edule HOM05D001398 ORTHO05D001467 6.9e-06 53.9 32 71.9
TWI32G1106 Tripterygium wilfordii HOM05D001398 ORTHO05D001467 6.9e-06 53.9 35 57.1
vmacro06265 Vaccinium macrocarpon HOM05D001398 ORTHO05D001467 6.9e-06 53.9 32 65.6
arahy.Tifrunner.gnm1.ann1.LWGR4X Arachis hypogaea HOM05D001398 ORTHO05D001467 9.1e-06 53.5 35 62.9
Dinv42275 Davidia involucrata HOM05D001398 ORTHO05D001467 9.1e-06 53.5 32 65.6
VMungo1309G0167 Vigna mungo HOM05D001398 ORTHO05D001467 9.1e-06 53.5 33 69.7


User provided reference genes

Program Settings