Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G123800 Manihot esculenta HOM05D006472 ORTHO05D008222 0.0e+00 1408.3 723 100.0
Potri.019G133000 Populus trichocarpa HOM05D006472 ORTHO05D008222 0.0e+00 1223.0 726 85.8
Sabra19G0129200 Salix brachista HOM05D006472 ORTHO05D008222 0.0e+00 1213.4 736 84.9
QL01p023614 Quercus lobata HOM05D006472 ORTHO05D008222 0.0e+00 1124.0 722 77.6
Atru.chr10.2355 Acer truncatum HOM05D006472 ORTHO05D008222 0.0e+00 1119.4 723 77.9
Cfa011860 Carpinus fangiana HOM05D006472 ORTHO05D008222 0.0e+00 1112.1 727 77.3
GSVIVG01024525001 Vitis vinifera HOM05D006472 ORTHO05D008222 0.0e+00 1109.7 723 78.0
Prupe.6G038300 Prunus persica HOM05D006472 ORTHO05D008222 0.0e+00 1105.9 723 77.0
CiPaw.13G059900 Carya illinoinensis HOM05D006472 ORTHO05D008222 0.0e+00 1101.3 726 77.3
Thecc.09G366100 Theobroma cacao HOM05D006472 ORTHO05D008222 0.0e+00 1091.3 729 76.0
CANSAT54G2825 Cannabis sativa HOM05D006472 ORTHO05D008222 0.0e+00 1088.2 721 75.0
Glyma.02G238400 Glycine max HOM05D006472 ORTHO05D008222 0.0e+00 1087.0 723 75.1
TAR369G0765 Trochodendron aralioides HOM05D006472 ORTHO05D008222 0.0e+00 1083.9 718 75.5
Glyma.14G207300 Glycine max HOM05D006472 ORTHO05D008222 0.0e+00 1082.4 723 74.7
Phvul.008G243600 Phaseolus vulgaris HOM05D006472 ORTHO05D008222 0.0e+00 1078.2 723 74.3
CSS0014639 Camellia sinensis var. sinensis HOM05D006472 ORTHO05D008222 0.0e+00 1076.2 724 76.4
MD03G1047100 Malus domestica HOM05D006472 ORTHO05D008222 0.0e+00 1076.2 723 75.5
MELO3C013696.2 Cucumis melo HOM05D006472 ORTHO05D008222 4.9e-312 1074.3 723 75.4
VMungo0647G2416 Vigna mungo HOM05D006472 ORTHO05D008222 2.5e-311 1071.6 722 74.0
Actinidia34511 Actinidia chinensis HOM05D006472 ORTHO05D008222 1.7e-310 1068.9 723 75.5
Lalb_Chr10g0103951 Lupinus albus HOM05D006472 ORTHO05D008222 2.1e-308 1062.0 724 73.6
Haze_24495 Corylus avellana HOM05D006472 ORTHO05D008222 5.6e-306 1053.9 835 66.8
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 5.6e-306 1053.9 699 77.4
RcHm_v2.0_Chr5g0073921 Rosa chinensis HOM05D006472 ORTHO05D008222 9.5e-306 1053.1 726 73.4
FvH4_3g41130 Fragaria vesca HOM05D006472 ORTHO05D008222 2.1e-305 1052.0 726 72.9
FAN11G3159 Fragaria x ananassa HOM05D006472 ORTHO05D008222 8.1e-305 1050.0 726 72.7
FAN16G1417 Fragaria x ananassa HOM05D006472 ORTHO05D008222 2.3e-304 1048.5 726 72.7
FAN21G1719 Fragaria x ananassa HOM05D006472 ORTHO05D008222 6.8e-304 1047.0 726 72.5
TWI31G0750 Tripterygium wilfordii HOM05D006472 ORTHO05D008222 3.4e-303 1044.6 730 74.2
Ca_05732_v3 Cicer arietinum L. HOM05D006472 ORTHO05D008222 4.9e-302 1040.8 727 72.4
vmacro14657 Vaccinium macrocarpon HOM05D006472 ORTHO05D008222 1.1e-301 1039.6 723 73.0
Nn5g26767 Nelumbo nucifera HOM05D006472 ORTHO05D008222 5.4e-301 1037.3 723 72.8
Gohir.D03G146000 Gossypium hirsutum HOM05D006472 ORTHO05D008222 6.0e-300 1033.9 726 72.7
EL10Ac8g20566 Beta vulgaris HOM05D006472 ORTHO05D008222 5.1e-299 1030.8 723 71.4
Duzib168G0790 Durio zibethinus HOM05D006472 ORTHO05D008222 1.6e-297 1025.8 728 72.1
LjContig00141g0008115 Lotus japonicus HOM05D006472 ORTHO05D008222 1.1e-296 1023.1 721 70.6
Hma1.2p1_0170F.1_g075410 Hydrangea macrophylla HOM05D006472 ORTHO05D008222 1.4e-296 1022.7 723 73.4
Gohir.A03G022700 Gossypium hirsutum HOM05D006472 ORTHO05D008222 4.0e-296 1021.1 720 72.1
COL.COLO4_08158 Corchorus olitorius HOM05D006472 ORTHO05D008222 2.0e-295 1018.8 731 71.3
Rhsim01G0245200 Rhododendron simsii HOM05D006472 ORTHO05D008222 2.9e-294 1015.0 792 67.7
Medtr5g075970 Medicago truncatula HOM05D006472 ORTHO05D008222 3.0e-291 1005.0 732 70.2
FAN25G3237 Fragaria x ananassa HOM05D006472 ORTHO05D008222 3.9e-291 1004.6 726 70.5
AUR62039472 Chenopodium quinoa HOM05D006472 ORTHO05D008222 8.7e-291 1003.4 723 70.4
TPR.G15403 Trifolium pratense HOM05D006472 ORTHO05D008222 4.3e-290 1001.1 716 70.8
Eucgr.J01848 Eucalyptus grandis HOM05D006472 ORTHO05D008222 6.9e-288 993.8 727 70.2
ECA248G1121 Erigeron canadensis HOM05D006472 ORTHO05D008222 1.5e-287 992.6 721 68.8
Lj2C1106G3 Lonicera japonica HOM05D006472 ORTHO05D008222 9.9e-287 989.9 723 70.1
HanXRQChr11g0338241 Helianthus annuus HOM05D006472 ORTHO05D008222 4.9e-286 987.6 721 69.1
Psat2g049480 Pisum sativum HOM05D006472 ORTHO05D008222 8.4e-286 986.9 724 69.5
Lsat_1_v5_gn_5_176920 Lactuca sativa HOM05D006472 ORTHO05D008222 1.9e-285 985.7 721 68.1
THA.LOC104798389 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 5.4e-285 984.2 725 68.6
Solyc09g055340.4 Solanum lycopersicum HOM05D006472 ORTHO05D008222 2.1e-284 982.2 721 68.7
PSO384G2469 Papaver somniferum HOM05D006472 ORTHO05D008222 3.0e-283 978.4 722 69.3
PSO339G5368 Papaver somniferum HOM05D006472 ORTHO05D008222 8.7e-283 976.9 722 68.8
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 2.1e-281 972.2 719 69.8
Ah.09g233500 Amaranthus hybridus HOM05D006472 ORTHO05D008222 9.0e-280 966.8 723 68.2
CDE07G0456 Ceratophyllum demersum HOM05D006472 ORTHO05D008222 9.0e-280 966.8 723 66.8
Sed0004215 Sechium edule HOM05D006472 ORTHO05D008222 6.4e-278 960.7 621 77.6
Sopen09g017740 Solanum pennellii HOM05D006472 ORTHO05D008222 2.4e-277 958.7 697 68.9
PGR119G0508 Punica granatum HOM05D006472 ORTHO05D008222 1.8e-275 952.6 727 68.9
Aqoxy2G00669 Aquilegia oxysepala HOM05D006472 ORTHO05D008222 3.7e-273 944.9 723 66.0
Aa31LG3G7830 Aethionema arabicum HOM05D006472 ORTHO05D008222 4.8e-273 944.5 722 66.1
arahy.Tifrunner.gnm1.ann1.9899SL Arachis hypogaea HOM05D006472 ORTHO05D008222 2.4e-272 942.2 723 68.3
Sp6g13540 Schrenkiella parvula HOM05D006472 ORTHO05D008222 6.9e-272 940.6 723 65.3
AL8G25600 Arabidopsis lyrata HOM05D006472 ORTHO05D008222 4.5e-271 937.9 723 65.7
Migut.N00711 Erythranthe guttata HOM05D006472 ORTHO05D008222 2.2e-270 935.6 724 65.9
AT5G51340 Arabidopsis thaliana HOM05D006472 ORTHO05D008222 5.5e-269 931.0 724 65.3
SGA_v2.0_scaffold120G33005 Striga asiatica HOM05D006472 ORTHO05D008222 3.5e-268 928.3 732 65.3
Carub.0008s1136 Capsella rubella HOM05D006472 ORTHO05D008222 6.7e-267 924.1 723 64.6
BcaC04g20686 Brassica carinata HOM05D006472 ORTHO05D008222 1.1e-266 923.3 722 64.5
C09p40600 Brassica napus HOM05D006472 ORTHO05D008222 1.1e-266 923.3 722 64.5
BolC9t56942H Brassica oleracea HOM05D006472 ORTHO05D008222 1.1e-266 923.3 722 64.5
BcaB08g35491 Brassica carinata HOM05D006472 ORTHO05D008222 1.9e-266 922.5 721 64.2
A10p09080 Brassica napus HOM05D006472 ORTHO05D008222 5.7e-266 921.0 723 64.7
BraA10t42993Z Brassica rapa HOM05D006472 ORTHO05D008222 1.6e-265 919.5 723 64.6
Thhalv10012792m.g Eutrema salsugineum HOM05D006472 ORTHO05D008222 6.3e-265 917.5 723 64.0
Sc11g0008920 Simmondsia chinensis HOM05D006472 ORTHO05D008222 8.2e-257 890.6 650 70.3
ATR1127G223 Amborella trichopoda HOM05D006472 ORTHO05D008222 8.5e-238 827.4 726 60.5
HPP92_024263 Vanilla planifolia HOM05D006472 ORTHO05D008222 1.4e-235 820.1 727 58.9
HPP92_024257 Vanilla planifolia HOM05D006472 ORTHO05D008222 1.8e-235 819.7 727 58.7
Ciclev10000965m.g Citrus clementina HOM05D006472 ORTHO05D008222 1.2e-218 763.8 479 79.3
DCAR_012719 Daucus carota HOM05D006472 ORTHO05D008222 9.2e-216 754.2 587 66.1
Medtr6g049450 Medicago truncatula HOM05D006472 ORTHO05D008222 6.6e-214 748.0 663 59.1
Zm00001eb193950 Zea mays HOM05D006472 ORTHO05D008222 1.6e-196 690.3 733 52.4
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 3.8e-185 652.5 671 53.9
Mapoly0020s0144 Marchantia polymorpha HOM05D006472 ORTHO05D008222 1.9e-181 640.2 665 51.6
SMO119G0519 Selaginella moellendorffii HOM05D006472 ORTHO05D008222 2.1e-180 636.7 679 51.8
CsaV3_3G000010 Cucumis sativus L. HOM05D006472 ORTHO05D008222 3.1e-179 632.9 437 75.1
Pp3c10_12710 Physcomitrium patens HOM05D006472 ORTHO05D008222 2.5e-173 613.2 671 48.4
Oeu034746.1 Olea europaea HOM05D006472 ORTHO05D008222 7.3e-173 611.7 470 67.7
Pp3c26_4960 Physcomitrium patens HOM05D006472 ORTHO05D008222 5.3e-171 605.5 671 48.7
Nitab4.5_0002030g0020 Nicotiana tabacum HOM05D006472 ORTHO05D008222 9.0e-171 604.7 596 54.4
THA.LOC104824615 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 1.3e-161 574.3 430 66.0
AUR62041830 Chenopodium quinoa HOM05D006472 ORTHO05D008222 1.4e-155 554.3 506 58.9
Peaxi162Scf00293g00816 Petunia axillaris HOM05D006472 ORTHO05D008222 1.3e-148 531.2 428 64.7
AagrBONN_evm.TU.Sc2ySwM_117.3516 Anthoceros agrestis HOM05D006472 ORTHO05D008222 1.0e-145 521.5 667 44.4
THA.LOC104824654 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 7.9e-143 511.9 392 65.1
ClCG10G000020 Citrullus lanatus HOM05D006472 ORTHO05D008222 4.3e-141 506.1 375 68.3
Cpa.g.sc2.260 Carica papaya HOM05D006472 ORTHO05D008222 2.3e-126 457.2 377 64.2
CBR_g46787 Chara braunii HOM05D006472 ORTHO05D008222 3.7e-124 449.9 661 38.0
Nitab4.5_0000195g0150 Nicotiana tabacum HOM05D006472 ORTHO05D008222 1.2e-122 444.9 479 51.6
Cpa.g.sc2.261 Carica papaya HOM05D006472 ORTHO05D008222 7.2e-120 435.6 312 72.4
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 7.2e-120 435.6 573 47.1
Cc01_g15530 Coffea canephora HOM05D006472 ORTHO05D008222 1.7e-116 424.5 299 68.2
Os04g0347600 Oryza sativa ssp. japonica HOM05D006472 ORTHO05D008222 4.5e-114 416.4 335 63.9
ClCG10G000010 Citrullus lanatus HOM05D006472 ORTHO05D008222 1.5e-112 411.4 325 68.0
CARHR264090 Cardamine hirsuta HOM05D006472 ORTHO05D008222 4.1e-107 393.3 296 68.6
Cc01_g15520 Coffea canephora HOM05D006472 ORTHO05D008222 3.3e-96 357.1 268 68.3
Nn5g26768 Nelumbo nucifera HOM05D006472 ORTHO05D008222 4.9e-92 343.2 228 74.6
Atru.chr10.2358 Acer truncatum HOM05D006472 ORTHO05D008222 6.0e-90 336.3 237 69.2
Nitab4.5_0001025g0010 Nicotiana tabacum HOM05D006472 ORTHO05D008222 2.6e-69 267.7 206 62.1
Ciclev10004061m.g Citrus clementina HOM05D006472 ORTHO05D008222 9.0e-62 242.7 155 80.0
Gorai.003G153200 Gossypium raimondii HOM05D006472 ORTHO05D008222 9.9e-61 239.2 160 78.8
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 9.6e-48 196.1 147 64.6
SEGI_25118 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 2.2e-44 184.9 137 65.0
MCO15G146 Micromonas commoda HOM05D006472 ORTHO05D008222 2.8e-31 141.4 754 24.7
Peaxi162Scf00293g00815 Petunia axillaris HOM05D006472 ORTHO05D008222 4.1e-22 110.9 104 57.7
SEGI_41332 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 2.0e-21 108.6 71 80.3
Lsat_1_v5_gn_5_131141 Lactuca sativa HOM05D006472 ORTHO05D008222 6.1e-18 97.1 69 71.0
Actinidia23826 Actinidia chinensis HOM05D006472 ORTHO05D008222 3.5e-13 81.3 66 68.2
Cre12.g532650 Chlamydomonas reinhardtii HOM05D006472 ORTHO05D008222 1.0e-12 79.7 674 22.1
Medtr5g078560 Medicago truncatula HOM05D006472 ORTHO05D008222 2.2e-07 62.0 45 64.4
Medtr6g051400 Medicago truncatula HOM05D006472 ORTHO05D008222 3.7e-07 61.2 52 48.1


User provided reference genes

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