Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G121700 Manihot esculenta HOM05D003201 ORTHO05D008805 8.4e-108 393.7 193 100.0
Sabra13G0129200 Salix brachista HOM05D003201 ORTHO05D008805 9.1e-70 267.3 193 73.1
Potri.013G161600 Populus trichocarpa HOM05D003201 ORTHO05D008805 6.5e-68 261.2 194 71.6
Dinv15525 Davidia involucrata HOM05D003201 ORTHO05D008805 1.4e-67 260.0 191 70.2
GSVIVG01034815001 Vitis vinifera HOM05D003201 ORTHO05D008805 4.2e-67 258.5 192 67.2
CiPaw.03G255400 Carya illinoinensis HOM05D003201 ORTHO05D008805 1.2e-66 256.9 192 69.8
Haze_24508 Corylus avellana HOM05D003201 ORTHO05D008805 1.6e-66 256.5 192 69.8
Cfa002302 Carpinus fangiana HOM05D003201 ORTHO05D008805 1.8e-65 253.1 192 68.2
CSS0031904 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008805 9.1e-62 240.7 194 66.0
TAR623G0449 Trochodendron aralioides HOM05D003201 ORTHO05D008805 4.5e-61 238.4 192 66.1
Cc01_g05060 Coffea canephora HOM05D003201 ORTHO05D008805 3.8e-60 235.3 193 61.1
Lj2g0011105 Lotus japonicus HOM05D003201 ORTHO05D008805 8.5e-60 234.2 192 63.5
QL04p043008 Quercus lobata HOM05D003201 ORTHO05D008805 2.5e-59 232.6 191 63.4
Medtr6g059320 Medicago truncatula HOM05D003201 ORTHO05D008805 5.5e-59 231.5 191 61.8
TWI34G1882 Tripterygium wilfordii HOM05D003201 ORTHO05D008805 1.6e-58 229.9 192 63.5
PGR119G1272 Punica granatum HOM05D003201 ORTHO05D008805 2.1e-58 229.6 193 64.2
Glyma.16G207100 Glycine max HOM05D003201 ORTHO05D008805 2.7e-58 229.2 193 62.2
Gohir.D09G114700 Gossypium hirsutum HOM05D003201 ORTHO05D008805 4.7e-58 228.4 192 62.0
TPR.G5800 Trifolium pratense HOM05D003201 ORTHO05D008805 4.7e-58 228.4 193 61.7
Psat1g112800 Pisum sativum HOM05D003201 ORTHO05D008805 6.1e-58 228.0 191 63.4
Gohir.A09G117900 Gossypium hirsutum HOM05D003201 ORTHO05D008805 1.0e-57 227.3 192 62.0
FAN11G2508 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.4e-57 226.9 192 62.0
Thecc.05G124600 Theobroma cacao HOM05D003201 ORTHO05D008805 1.4e-57 226.9 192 63.5
Prupe.6G000300 Prunus persica HOM05D003201 ORTHO05D008805 2.3e-57 226.1 192 60.9
Phvul.004G131600 Phaseolus vulgaris HOM05D003201 ORTHO05D008805 3.9e-57 225.3 192 60.9
Aqoxy5G03624 Aquilegia oxysepala HOM05D003201 ORTHO05D008805 8.8e-57 224.2 197 60.9
Lalb_Chr01g0008671 Lupinus albus HOM05D003201 ORTHO05D008805 8.8e-57 224.2 193 61.7
VMungo0464G1483 Vigna mungo HOM05D003201 ORTHO05D008805 8.8e-57 224.2 192 60.4
Glyma.09G156400 Glycine max HOM05D003201 ORTHO05D008805 1.5e-56 223.4 193 61.7
Actinidia16221 Actinidia chinensis HOM05D003201 ORTHO05D008805 2.0e-56 223.0 192 60.9
Eucgr.J01718 Eucalyptus grandis HOM05D003201 ORTHO05D008805 3.3e-56 222.2 198 60.1
Hma1.2p1_1133F.1_g260360 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 3.3e-56 222.2 196 61.7
Hma1.2p1_1133F.1_g260370 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 3.3e-56 222.2 196 61.7
RcHm_v2.0_Chr5g0084171 Rosa chinensis HOM05D003201 ORTHO05D008805 3.3e-56 222.2 192 62.0
FvH4_3g46100 Fragaria vesca HOM05D003201 ORTHO05D008805 4.4e-56 221.9 192 60.4
vmacro04280 Vaccinium macrocarpon HOM05D003201 ORTHO05D008805 8.2e-55 217.6 192 61.5
PSO339G6265 Papaver somniferum HOM05D003201 ORTHO05D008805 1.8e-54 216.5 192 57.8
Cpa.g.sc30.50 Carica papaya HOM05D003201 ORTHO05D008805 5.3e-54 214.9 192 59.4
PSO384G0221 Papaver somniferum HOM05D003201 ORTHO05D008805 7.0e-54 214.5 195 59.0
MD11G1000200 Malus domestica HOM05D003201 ORTHO05D008805 1.6e-53 213.4 193 60.1
FAN25G0659 Fragaria x ananassa HOM05D003201 ORTHO05D008805 2.6e-53 212.6 184 61.4
MBI13_g39202_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 3.5e-53 212.2 199 57.8
CAN.G431.2 Capsicum annuum HOM05D003201 ORTHO05D008805 1.3e-52 210.3 192 59.9
Peaxi162Scf01181g00210 Petunia axillaris HOM05D003201 ORTHO05D008805 3.8e-52 208.8 203 55.7
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 5.5e-51 204.9 192 60.4
Migut.N00525 Erythranthe guttata HOM05D003201 ORTHO05D008805 1.6e-50 203.4 192 59.9
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 2.7e-50 202.6 192 57.3
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 2.7e-50 202.6 192 59.4
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 3.6e-50 202.2 192 57.8
THA.LOC104806236 Tarenaya hassleriana HOM05D003201 ORTHO05D008805 6.1e-50 201.4 192 56.8
Solyc01g057570.3 Solanum lycopersicum HOM05D003201 ORTHO05D008805 1.0e-49 200.7 192 55.7
Sopen01g022430 Solanum pennellii HOM05D003201 ORTHO05D008805 3.0e-49 199.1 192 55.7
CANSAT35G1729 Cannabis sativa HOM05D003201 ORTHO05D008805 5.2e-49 198.4 192 57.3
ECA248G3933 Erigeron canadensis HOM05D003201 ORTHO05D008805 8.8e-49 197.6 191 54.5
AUR62000916 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.5e-48 196.8 192 54.7
CsaV3_6G041170 Cucumis sativus L. HOM05D003201 ORTHO05D008805 2.6e-48 196.1 192 57.3
Sp7g18690 Schrenkiella parvula HOM05D003201 ORTHO05D008805 2.6e-48 196.1 192 56.8
MELO3C024592.2 Cucumis melo HOM05D003201 ORTHO05D008805 3.4e-48 195.7 192 56.8
AUR62005054 Chenopodium quinoa HOM05D003201 ORTHO05D008805 7.5e-48 194.5 187 55.1
Thhalv10026088m.g Eutrema salsugineum HOM05D003201 ORTHO05D008805 7.5e-48 194.5 192 56.2
MSTRG.12815 Avicennia marina HOM05D003201 ORTHO05D008805 9.7e-48 194.1 195 54.4
Sed0008662 Sechium edule HOM05D003201 ORTHO05D008805 9.7e-48 194.1 190 54.2
DCAR_028397 Daucus carota HOM05D003201 ORTHO05D008805 3.7e-47 192.2 202 55.4
ClCG01G015060 Citrullus lanatus HOM05D003201 ORTHO05D008805 4.8e-47 191.8 190 53.7
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 2.4e-46 189.5 185 56.2
HanXRQChr17g0555621 Helianthus annuus HOM05D003201 ORTHO05D008805 7.0e-46 188.0 193 53.9
AT4G20350 Arabidopsis thaliana HOM05D003201 ORTHO05D008805 1.2e-45 187.2 193 57.0
Carub.0007s2082 Capsella rubella HOM05D003201 ORTHO05D008805 1.2e-45 187.2 192 55.7
CDE02G2127 Ceratophyllum demersum HOM05D003201 ORTHO05D008805 1.6e-45 186.8 198 51.5
Atru.chr2.209 Acer truncatum HOM05D003201 ORTHO05D008805 4.5e-45 185.3 116 80.2
AL7G33540 Arabidopsis lyrata HOM05D003201 ORTHO05D008805 4.5e-45 185.3 193 57.0
arahy.Tifrunner.gnm1.ann1.75P5EB Arachis hypogaea HOM05D003201 ORTHO05D008805 5.9e-45 184.9 164 61.0
arahy.Tifrunner.gnm1.ann1.F1EX5J Arachis hypogaea HOM05D003201 ORTHO05D008805 5.9e-45 184.9 164 61.6
SGA_v2.0_scaffold6G03334 Striga asiatica HOM05D003201 ORTHO05D008805 2.2e-44 183.0 211 50.7
Ca_25246_v3 Cicer arietinum L. HOM05D003201 ORTHO05D008805 6.5e-44 181.4 161 58.4
MBI13_g36948_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 8.5e-44 181.0 177 54.8
Nitab4.5_0000075g0050 Nicotiana tabacum HOM05D003201 ORTHO05D008805 8.5e-44 181.0 213 50.7
BcaC09g51346 Brassica carinata HOM05D003201 ORTHO05D008805 2.5e-43 179.5 140 66.4
EL10Ac4g09260 Beta vulgaris HOM05D003201 ORTHO05D008805 4.2e-43 178.7 233 45.9
SalBow3G4219 Salvia bowleyana HOM05D003201 ORTHO05D008805 4.2e-43 178.7 133 69.9
Zm00001eb047810 Zea mays HOM05D003201 ORTHO05D008805 4.2e-43 178.7 204 51.0
CARHR227170 Cardamine hirsuta HOM05D003201 ORTHO05D008805 7.2e-43 177.9 196 53.6
Sopen01g019970 Solanum pennellii HOM05D003201 ORTHO05D008805 7.2e-43 177.9 192 52.6
ATR0068G091 Amborella trichopoda HOM05D003201 ORTHO05D008805 2.7e-42 176.0 192 50.5
Lsat_1_v5_gn_1_71340 Lactuca sativa HOM05D003201 ORTHO05D008805 4.7e-42 175.3 138 65.9
HPP92_021155 Vanilla planifolia HOM05D003201 ORTHO05D008805 4.7e-42 175.3 193 51.3
SEGI_31075 Sequoiadendron giganteum HOM05D003201 ORTHO05D008805 2.6e-40 169.5 210 47.1
Gorai.006G132500 Gossypium raimondii HOM05D003201 ORTHO05D008805 1.3e-39 167.2 119 72.3
Sc18g0002730 Simmondsia chinensis HOM05D003201 ORTHO05D008805 1.3e-39 167.2 146 64.4
FAN21G2623 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.7e-39 166.8 162 55.6
Hund07019 Selenicereus undatus HOM05D003201 ORTHO05D008805 2.2e-39 166.4 161 56.5
unitig_0.g1143 Utricularia gibba HOM05D003201 ORTHO05D008805 6.3e-39 164.9 192 49.5
Ciclev10029320m.g Citrus clementina HOM05D003201 ORTHO05D008805 9.1e-38 161.0 117 67.5
PGSC0003DMG400026601 Solanum tuberosum HOM05D003201 ORTHO05D008805 8.6e-36 154.5 162 53.7
COL.COLO4_24749 Corchorus olitorius HOM05D003201 ORTHO05D008805 1.1e-35 154.1 162 52.5
Mapoly0007s0017 Marchantia polymorpha HOM05D003201 ORTHO05D008805 1.9e-35 153.3 194 43.8
Rhsim13G0235500 Rhododendron simsii HOM05D003201 ORTHO05D008805 9.5e-35 151.0 147 55.8
Pp3c2_18510 Physcomitrium patens HOM05D003201 ORTHO05D008805 2.1e-34 149.8 194 43.8
Duzib093G2193 Durio zibethinus HOM05D003201 ORTHO05D008805 4.0e-33 145.6 173 48.6
Nitab4.5_0005125g0010 Nicotiana tabacum HOM05D003201 ORTHO05D008805 8.9e-33 144.4 130 59.2
Lj1A555G38 Lonicera japonica HOM05D003201 ORTHO05D008805 3.4e-32 142.5 173 50.9
Os10g0420000 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008805 3.4e-32 142.5 202 46.5
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 1.1e-30 137.5 184 45.7
SMO147G0005 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 7.8e-29 131.3 195 45.1
SMO132G0004 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 1.2e-26 124.0 209 39.2
AUR62004843 Chenopodium quinoa HOM05D003201 ORTHO05D008805 3.9e-20 102.4 74 66.2
MCO03G055 Micromonas commoda HOM05D003201 ORTHO05D008805 1.1e-17 94.4 173 39.9
PRCOL_00004726 Prasinoderma coloniale HOM05D003201 ORTHO05D008805 4.3e-11 72.4 121 38.8
MCO08G131 Micromonas commoda HOM05D003201 ORTHO05D008805 5.6e-11 72.0 125 39.2
Cre14.g632791 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008805 6.2e-10 68.6 40 70.0
CBR_g45547 Chara braunii HOM05D003201 ORTHO05D008805 1.3e-07 60.8 258 26.0
Cfa026017 Carpinus fangiana HOM05D003201 ORTHO05D124792 2.9e-07 59.7 54 51.9


User provided reference genes

Program Settings