Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 1.3e-304 1048.9 538 100.0
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 1.5e-239 832.8 540 78.0
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 8.6e-235 817.0 558 74.6
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 2.6e-231 805.4 535 77.2
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 3.7e-230 801.6 537 76.7
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 2.3e-227 792.3 541 75.8
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 2.3e-227 792.3 534 75.8
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 3.9e-227 791.6 541 75.0
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 1.6e-225 786.2 531 75.9
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 1.2e-223 780.0 541 73.9
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 2.0e-223 779.2 536 73.7
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 2.9e-222 775.4 541 74.5
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 3.7e-222 775.0 531 73.8
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 4.9e-222 774.6 541 74.1
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 8.3e-222 773.9 541 74.1
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 2.4e-221 772.3 531 74.8
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 7.0e-221 770.8 530 73.6
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 1.2e-220 770.0 536 73.7
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 1.3e-219 766.5 535 73.5
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 1.7e-219 766.1 531 74.4
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 5.0e-219 764.6 531 74.2
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 5.0e-219 764.6 536 73.5
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 4.3e-218 761.5 531 72.9
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.7e-214 749.6 560 71.1
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 1.9e-213 746.1 533 72.0
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 2.7e-212 742.3 534 70.8
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 6.0e-212 741.1 534 71.9
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 1.0e-211 740.3 534 69.9
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 1.0e-211 740.3 536 71.8
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 2.5e-210 735.7 545 70.1
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 2.3e-208 729.2 550 70.2
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 4.9e-206 721.5 536 68.3
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 8.3e-206 720.7 540 67.8
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 1.9e-205 719.5 541 68.6
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 4.1e-205 718.4 540 67.4
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 9.2e-205 717.2 539 68.5
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 2.7e-204 715.7 537 68.5
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 1.3e-203 713.4 536 69.4
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 2.5e-202 709.1 539 69.0
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 7.3e-202 707.6 532 69.2
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 9.5e-202 707.2 537 68.5
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 2.4e-200 702.6 527 67.2
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 8.9e-200 700.7 530 68.9
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 2.0e-199 699.5 540 67.4
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 4.4e-199 698.4 584 64.0
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 5.8e-199 698.0 536 67.7
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 9.9e-199 697.2 592 62.8
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 2.2e-198 696.0 531 67.6
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 3.8e-198 695.3 537 67.4
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 1.9e-197 693.0 541 66.0
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 9.2e-197 690.6 536 65.1
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 2.1e-196 689.5 539 65.3
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 2.1e-196 689.5 540 65.7
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 2.1e-196 689.5 536 65.5
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 7.8e-196 687.6 537 66.9
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 1.7e-195 686.4 531 68.5
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 6.6e-195 684.5 537 67.0
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 1.5e-194 683.3 537 64.8
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 3.3e-194 682.2 540 66.1
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 3.3e-194 682.2 542 64.9
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 7.3e-194 681.0 537 65.0
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 2.8e-193 679.1 537 65.7
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 2.8e-193 679.1 536 64.0
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 6.2e-193 677.9 532 65.2
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 1.8e-192 676.4 537 66.5
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 2.0e-191 672.9 540 63.9
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 1.3e-187 660.2 532 63.7
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 1.9e-186 656.4 539 63.3
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 1.8e-184 649.8 453 73.1
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 6.9e-184 647.9 552 62.7
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 1.2e-183 647.1 564 62.2
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 1.5e-183 646.7 526 63.3
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 2.0e-183 646.4 590 60.2
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 7.6e-183 644.4 505 66.9
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 1.8e-176 623.2 448 71.2
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 1.5e-175 620.2 544 59.4
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 7.6e-175 617.8 547 59.4
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 1.0e-174 617.5 506 63.4
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 3.8e-174 615.5 539 60.5
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 1.4e-173 613.6 532 59.0
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 3.0e-171 605.9 539 59.6
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 1.9e-170 603.2 544 58.1
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 4.3e-170 602.1 539 59.0
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 2.8e-169 599.4 553 57.9
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 3.1e-168 595.9 437 70.5
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 7.6e-167 591.3 537 57.9
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 1.6e-161 573.5 539 57.0
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 2.5e-157 559.7 537 56.8
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 1.0e-150 537.7 537 55.3
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 7.4e-146 521.5 571 53.6
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 1.8e-139 500.4 403 63.3
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 4.4e-138 495.7 412 60.9
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 8.2e-137 491.5 356 69.7
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 3.1e-136 489.6 356 69.4
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 7.0e-136 488.4 390 64.1
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 1.9e-133 480.3 531 47.8
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 2.3e-131 473.4 546 47.6
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 4.4e-130 469.2 544 48.5
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 4.8e-129 465.7 497 51.5
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 4.2e-117 426.0 288 76.4
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 4.6e-103 379.4 564 39.9
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 1.7e-102 377.5 287 68.3
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 3.7e-97 359.8 466 44.0
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 8.1e-92 342.0 555 39.3
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 1.6e-84 317.8 290 59.7
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 3.0e-78 297.0 205 75.6
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 2.0e-74 284.3 388 43.8
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 1.0e-70 271.9 561 33.0
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 1.1e-69 268.5 584 32.5
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 2.4e-64 250.8 212 63.7
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 1.3e-60 238.4 546 32.6
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 1.3e-57 228.4 150 72.7
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 9.6e-53 212.2 160 65.0
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 4.1e-51 206.8 135 77.0
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 7.6e-50 202.6 169 58.0
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.7e-49 201.4 130 76.2
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 8.2e-44 182.6 139 67.6
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 3.0e-38 164.1 126 62.7
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 4.8e-36 156.8 113 69.9
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 1.4e-30 138.7 85 83.5
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 3.9e-30 137.1 99 72.7
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 8.2e-28 129.4 100 63.0
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 3.8e-25 120.6 457 27.1
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 2.2e-20 104.8 196 37.8
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 1.7e-17 95.1 72 66.7
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 6.5e-17 93.2 71 66.2
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 1.2e-15 89.0 71 63.4
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 1.2e-15 89.0 71 63.4
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 2.7e-15 87.8 73 58.9
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 4.1e-11 73.9 49 73.5
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 9.1e-11 72.8 265 27.2
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 9.1e-11 72.8 114 43.9
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 2.7e-10 71.2 114 43.0
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 3.5e-10 70.9 68 55.9
Lsat_1_v5_gn_3_107600 Lactuca sativa HOM05D000629 ORTHO05D013393 8.5e-09 66.2 75 48.0
VMungo1080G0730 Vigna mungo HOM05D000311 ORTHO05D000183 1.6e-07 62.0 310 24.2
Cre01.g023550 Chlamydomonas reinhardtii HOM05D016773 ORTHO05D019668 3.6e-07 60.8 276 26.8
Mapoly0004s0193 Marchantia polymorpha HOM05D016773 ORTHO05D019668 8.0e-07 59.7 287 25.8
Eucgr.E04263 Eucalyptus grandis HOM05D000311 ORTHO05D000183 6.8e-06 56.6 261 29.1


User provided reference genes

Program Settings