Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 3.6e-109 398.3 203 100.0
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 9.6e-62 240.7 204 67.2
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 2.7e-56 222.6 209 65.1
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 3.0e-55 219.2 199 66.3
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 5.1e-55 218.4 192 66.1
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 1.3e-53 213.8 191 61.8
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 3.1e-52 209.1 191 62.3
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 8.4e-50 201.1 200 62.5
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 1.4e-49 200.3 209 59.3
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 1.4e-49 200.3 186 57.0
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 5.4e-49 198.4 194 58.2
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 3.0e-47 192.6 188 58.5
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 3.9e-47 192.2 204 55.9
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 8.7e-47 191.0 186 58.6
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 3.3e-46 189.1 203 57.1
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 9.6e-46 187.6 198 60.6
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.8e-45 185.3 194 58.2
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.8e-45 185.3 198 58.1
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 1.1e-44 184.1 205 54.6
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 1.8e-44 183.3 194 57.7
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 2.6e-43 179.5 192 56.2
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 5.8e-43 178.3 196 60.7
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 5.8e-43 178.3 196 60.7
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 9.9e-43 177.6 137 65.7
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 2.2e-42 176.4 189 54.0
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 4.9e-42 175.3 207 57.5
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 4.2e-41 172.2 187 55.6
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 1.2e-40 170.6 164 62.8
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 1.6e-40 170.2 188 55.3
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 2.1e-40 169.9 221 51.6
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 2.7e-40 169.5 139 62.6
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 3.9e-39 165.6 208 50.5
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 5.1e-39 165.2 134 64.2
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 6.7e-39 164.9 197 52.3
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 1.9e-38 163.3 206 50.5
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 5.6e-38 161.8 195 51.3
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 7.4e-38 161.4 186 53.2
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 7.4e-38 161.4 199 52.3
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 9.6e-38 161.0 186 52.7
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 1.6e-37 160.2 166 57.8
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 3.7e-37 159.1 173 54.9
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 3.7e-37 159.1 210 50.5
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 8.1e-37 157.9 165 57.0
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 1.1e-36 157.5 193 51.8
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 6.9e-36 154.8 211 52.1
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 6.9e-36 154.8 171 53.8
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 2.6e-35 152.9 169 52.1
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 1.9e-33 146.7 189 51.9
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 2.5e-33 146.4 203 48.8
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 3.2e-33 146.0 192 51.0
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 3.2e-33 146.0 181 50.8
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 5.5e-33 145.2 161 53.4
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 7.1e-33 144.8 206 46.1
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 1.6e-32 143.7 177 52.0
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 2.1e-32 143.3 198 47.0
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 2.1e-32 143.3 212 50.9
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 7.9e-32 141.4 192 50.0
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 1.0e-31 141.0 168 51.2
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 1.3e-31 140.6 191 50.3
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 1.8e-31 140.2 202 47.5
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 3.9e-31 139.0 220 45.9
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 3.9e-31 139.0 206 44.7
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 6.7e-31 138.3 198 44.9
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 1.1e-30 137.5 189 48.7
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 1.1e-30 137.5 195 46.7
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 1.5e-30 137.1 191 47.6
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 1.9e-30 136.7 179 52.5
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 2.5e-30 136.3 172 47.7
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 3.3e-30 136.0 190 48.4
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 3.3e-30 136.0 190 48.4
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 7.4e-30 134.8 176 47.7
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 7.4e-30 134.8 217 47.5
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 9.6e-30 134.4 143 51.0
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 9.6e-30 134.4 179 48.6
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 1.3e-29 134.0 194 45.9
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 1.3e-29 134.0 194 45.9
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 1.3e-29 134.0 194 45.9
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 1.3e-29 134.0 195 46.2
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 1.6e-29 133.7 178 47.2
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 2.8e-29 132.9 190 47.9
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 2.8e-29 132.9 199 48.7
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 2.8e-29 132.9 200 44.0
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 3.7e-29 132.5 200 43.5
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 1.1e-28 131.0 190 47.4
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 1.1e-28 131.0 199 46.7
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 1.4e-28 130.6 200 48.5
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.8e-28 130.2 216 46.3
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 3.1e-28 129.4 191 47.1
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 3.1e-28 129.4 191 47.1
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 3.1e-28 129.4 182 53.3
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 6.9e-28 128.3 217 45.6
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 6.9e-28 128.3 185 49.7
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 1.2e-27 127.5 181 47.0
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 1.2e-27 127.5 164 47.6
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 1.2e-27 127.5 201 47.3
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 2.6e-27 126.3 195 44.6
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 3.4e-27 125.9 154 51.9
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 5.9e-27 125.2 209 41.6
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 1.3e-26 124.0 178 49.4
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 1.7e-26 123.6 216 44.4
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 2.2e-26 123.2 207 43.0
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 2.9e-26 122.9 167 46.7
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 5.0e-26 122.1 177 45.8
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 5.5e-25 118.6 170 47.1
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 7.2e-25 118.2 173 45.1
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 7.2e-25 118.2 170 49.4
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 1.2e-24 117.5 192 42.2
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 1.2e-24 117.5 159 45.3
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 1.6e-24 117.1 184 44.0
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 6.1e-24 115.2 168 48.2
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.0e-23 114.4 145 46.2
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.3e-23 114.0 161 48.4
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 1.3e-23 114.0 180 46.1
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 3.0e-23 112.8 165 49.1
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 3.9e-23 112.5 142 47.9
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 3.9e-23 112.5 181 44.2
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 6.7e-23 111.7 186 42.5
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 3.3e-22 109.4 203 43.3
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.3e-21 107.5 184 41.3
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 2.2e-21 106.7 194 42.3
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 8.2e-21 104.8 161 41.6
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 3.1e-20 102.8 187 40.1
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.5e-19 100.5 163 41.7
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 1.5e-19 100.5 171 45.6
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 3.4e-19 99.4 159 40.9
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 3.4e-19 99.4 168 42.9
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 4.5e-19 99.0 203 43.8
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 4.5e-19 99.0 178 46.1
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 7.7e-19 98.2 142 44.4
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 2.9e-18 96.3 174 40.8
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 6.5e-18 95.1 177 39.0
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 6.5e-18 95.1 151 42.4
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 2.1e-16 90.1 190 36.8
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 7.9e-16 88.2 134 46.3
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 1.8e-15 87.0 147 38.1
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 2.3e-15 86.7 124 42.7
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 3.0e-15 86.3 179 38.5
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 4.3e-14 82.4 197 38.1
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 2.8e-13 79.7 207 36.7
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 6.3e-13 78.6 91 45.1
HPP92_003138 Vanilla planifolia HOM05D005065 ORTHO05D005944 1.7e-10 70.5 150 39.3
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 8.5e-10 68.2 147 38.8
HPP92_005697 Vanilla planifolia HOM05D005065 ORTHO05D005944 2.7e-08 63.2 144 33.3
TAR381G1423 Trochodendron aralioides HOM05D005065 ORTHO05D005944 7.9e-08 61.6 51 60.8
Nitab4.5_0002483g0030 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.8e-07 60.5 125 36.0
HPP92_006868 Vanilla planifolia HOM05D064031 ORTHO05D005944 3.0e-07 59.7 152 35.5
HPP92_006851 Vanilla planifolia HOM05D064031 ORTHO05D005944 1.5e-06 57.4 152 34.9


User provided reference genes

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