Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 1.0e-196 689.9 340 100.0
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 2.4e-158 562.4 340 77.4
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 7.0e-158 560.8 340 77.1
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.4e-150 535.8 335 74.3
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 3.1e-150 535.4 339 76.7
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 4.1e-150 535.0 333 76.0
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 7.7e-149 530.8 335 74.0
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.5e-147 526.6 335 73.4
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 4.2e-147 525.0 341 74.8
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 2.1e-146 522.7 326 75.2
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 3.6e-146 521.9 316 77.5
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 8.0e-146 520.8 337 73.9
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 6.8e-145 517.7 335 72.8
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 2.6e-144 515.8 319 75.9
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 7.5e-144 514.2 339 72.0
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 1.3e-143 513.5 342 71.3
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 1.7e-143 513.1 380 67.1
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 2.8e-143 512.3 339 71.7
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 3.7e-143 511.9 312 75.3
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 3.7e-143 511.9 335 73.1
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 4.9e-143 511.5 337 73.3
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 3.2e-142 508.8 375 68.3
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 4.1e-142 508.4 342 71.9
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 4.1e-142 508.4 342 71.9
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 5.4e-142 508.1 332 72.0
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 7.0e-142 507.7 396 65.2
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 1.6e-141 506.5 336 72.0
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 2.7e-141 505.8 338 70.7
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 3.5e-141 505.4 341 70.1
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 2.3e-140 502.7 316 76.3
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 3.9e-140 501.9 339 70.8
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 3.3e-139 498.8 336 72.6
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 1.2e-138 496.9 335 71.3
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.1e-138 496.1 323 72.1
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 6.1e-138 494.6 337 69.1
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 6.1e-138 494.6 315 73.3
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 8.0e-138 494.2 329 69.6
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 1.0e-137 493.8 333 71.5
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 1.0e-137 493.8 323 71.2
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.0e-137 493.8 322 71.4
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 1.0e-137 493.8 329 69.3
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 3.1e-137 492.3 337 70.9
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 1.2e-136 490.3 339 71.4
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.2e-136 490.3 323 70.9
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 2.6e-136 489.2 349 69.3
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 2.6e-136 489.2 336 72.3
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 9.8e-136 487.3 331 70.1
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 8.3e-135 484.2 331 70.1
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 1.9e-134 483.0 325 70.5
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.9e-134 483.0 377 63.4
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 3.2e-134 482.3 315 72.4
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 3.2e-134 482.3 331 67.7
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 3.2e-134 482.3 336 67.6
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 9.2e-134 480.7 336 67.9
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 9.2e-134 480.7 327 70.3
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 1.2e-133 480.3 336 66.7
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 1.6e-133 479.9 346 68.8
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 2.7e-133 479.2 332 71.4
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 1.0e-132 477.2 332 71.1
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 1.0e-132 477.2 332 71.1
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.0e-132 477.2 346 68.5
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 3.0e-132 475.7 333 67.9
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 8.6e-132 474.2 340 68.2
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 8.6e-132 474.2 341 66.9
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 8.6e-132 474.2 341 66.9
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 1.1e-131 473.8 318 71.4
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 8.0e-130 467.6 323 71.2
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 1.8e-129 466.5 322 69.6
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 8.9e-129 464.2 341 68.0
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 8.9e-129 464.2 347 66.9
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 9.8e-128 460.7 308 71.8
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 2.9e-127 459.1 290 73.4
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.4e-126 456.8 347 66.6
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 4.6e-125 451.8 324 68.2
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 7.8e-125 451.1 324 67.6
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 5.1e-124 448.4 309 68.6
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 2.5e-123 446.0 341 64.8
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 3.3e-123 445.7 320 66.9
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 5.6e-123 444.9 317 68.1
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 7.3e-123 444.5 308 67.5
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 8.1e-122 441.0 262 78.2
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 4.0e-121 438.7 326 67.5
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.7e-119 433.3 284 72.5
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 3.7e-119 432.2 382 59.4
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 1.9e-118 429.9 342 61.7
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 4.1e-118 428.7 301 68.4
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 3.5e-117 425.6 314 67.5
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.3e-116 422.9 284 71.8
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 9.6e-115 417.5 270 72.6
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 2.1e-114 416.4 326 63.8
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.4e-113 413.7 260 73.8
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 1.7e-111 406.8 341 58.1
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 4.9e-111 405.2 211 89.1
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 9.3e-110 401.0 333 62.8
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 9.3e-110 401.0 333 62.2
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 3.9e-108 395.6 252 74.2
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 3.3e-107 392.5 318 60.1
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 5.6e-107 391.7 243 74.5
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 7.3e-107 391.3 340 58.5
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 4.8e-106 388.7 321 62.6
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 9.9e-104 380.9 319 59.9
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 1.3e-103 380.6 347 56.8
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 1.1e-102 377.5 344 56.4
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.4e-102 377.1 246 70.3
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 5.4e-102 375.2 296 61.5
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 3.5e-101 372.5 324 62.0
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 1.3e-100 370.5 418 49.8
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 3.9e-100 369.0 321 57.3
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 5.6e-99 365.2 227 72.7
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 1.6e-98 363.6 337 60.5
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 2.1e-98 363.2 325 58.8
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.1e-98 363.2 342 59.9
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.3e-97 358.6 335 58.5
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 5.3e-97 358.6 336 57.1
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.9e-95 352.8 344 57.6
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 6.4e-95 351.7 310 58.4
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 1.2e-93 347.4 268 63.4
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 8.1e-90 334.7 389 48.6
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.1e-89 332.8 278 61.2
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 1.2e-88 330.9 322 57.1
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 2.7e-85 319.7 311 55.0
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 4.1e-81 305.8 254 59.8
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 1.5e-80 303.9 281 54.8
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 7.2e-70 268.5 302 47.4
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 7.2e-70 268.5 309 45.0
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 2.0e-64 250.4 251 50.6
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.0e-63 248.1 302 44.0
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 5.0e-63 245.7 306 42.5
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 2.7e-61 240.0 148 73.6
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 3.6e-61 239.6 138 75.4
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 6.1e-61 238.8 241 53.5
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 3.2e-54 216.5 113 86.7
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 2.3e-52 210.3 153 66.0
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 8.8e-52 208.4 254 43.7
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 7.5e-51 205.3 160 58.8
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 1.7e-50 204.1 204 47.5
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 4.1e-49 199.5 262 39.3
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 6.5e-47 192.2 331 38.4
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.2e-45 188.0 304 38.5
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 3.0e-44 183.3 248 42.3
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 4.2e-38 162.9 224 41.1
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 3.0e-36 156.8 101 70.3
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 4.9e-34 149.4 254 35.4
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 9.1e-33 145.2 270 34.1
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.6e-29 134.4 255 32.2
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.0e-28 131.7 393 28.8
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.0e-28 131.7 220 35.0
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 2.4e-25 120.6 71 76.1
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 2.4e-25 120.6 71 76.1
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 5.4e-25 119.4 71 74.6
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 2.0e-24 117.5 303 32.3
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.0e-23 115.2 307 29.3
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.7e-23 114.4 158 39.9
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 8.6e-23 112.1 84 63.1
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 1.1e-22 111.7 113 42.5
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 1.1e-22 111.7 114 41.2
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 4.3e-22 109.8 211 35.5
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 2.3e-20 104.0 291 27.5
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 9.8e-19 98.6 249 30.5
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 1.6e-16 91.3 60 68.3
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 7.3e-14 82.4 80 51.2
Glyma.20G173800 Glycine max HOM05D004272 ORTHO05D005020 3.1e-12 77.0 108 48.1
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 4.4e-11 73.2 95 44.2
COL.COLO4_33299 Corchorus olitorius HOM05D004272 ORTHO05D005020 6.4e-10 69.3 68 58.8
PGR042G2939 Punica granatum HOM05D002901 ORTHO05D003183 1.7e-07 61.2 91 42.9


User provided reference genes

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