Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 2.5e-113 412.1 212 100.0
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 2.5e-81 305.8 203 71.9
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.3e-80 303.5 210 72.9
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 3.4e-78 295.4 207 70.0
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 2.2e-77 292.7 205 69.3
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 2.2e-77 292.7 203 66.5
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 8.4e-77 290.8 207 68.1
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 1.2e-75 287.0 199 69.3
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 1.0e-74 283.9 207 69.6
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 2.3e-74 282.7 207 65.7
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 5.1e-74 281.6 199 67.8
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 1.5e-73 280.0 199 67.8
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 2.5e-73 279.3 199 67.3
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 4.3e-73 278.5 207 65.2
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.6e-72 276.6 207 65.2
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 2.8e-72 275.8 207 66.2
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 8.1e-72 274.2 207 64.7
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 1.4e-71 273.5 207 65.7
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 1.4e-71 273.5 204 62.7
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 1.4e-71 273.5 208 63.9
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 1.4e-71 273.5 205 64.4
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 3.1e-71 272.3 207 64.3
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 6.9e-71 271.2 207 64.3
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 9.0e-71 270.8 207 63.8
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 9.0e-71 270.8 199 66.3
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 1.5e-70 270.0 208 64.9
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 7.6e-70 267.7 188 70.2
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 1.0e-69 267.3 205 63.4
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 1.3e-69 266.9 205 64.4
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 1.7e-69 266.5 208 65.9
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 3.8e-69 265.4 207 61.4
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 3.8e-69 265.4 207 61.4
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 8.4e-69 264.2 205 62.4
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 1.1e-68 263.8 211 60.2
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 1.1e-68 263.8 218 62.4
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 2.5e-68 262.7 207 60.9
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 4.2e-68 261.9 204 63.2
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 4.2e-68 261.9 205 62.4
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 5.5e-68 261.5 205 61.5
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 7.1e-68 261.2 206 62.1
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 2.1e-67 259.6 204 62.7
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 2.7e-67 259.2 207 62.3
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 3.5e-67 258.8 205 62.0
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 4.6e-67 258.5 200 63.5
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 3.0e-66 255.8 205 60.0
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 2.5e-65 252.7 207 60.4
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 3.3e-65 252.3 205 61.5
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 7.4e-65 251.1 204 60.3
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 1.3e-64 250.4 207 56.5
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 2.1e-64 249.6 204 59.3
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 4.8e-64 248.4 207 60.9
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 8.2e-64 247.7 198 62.1
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 8.2e-64 247.7 209 55.5
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 4.1e-63 245.4 207 63.3
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 2.2e-61 239.6 227 53.3
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 2.2e-61 239.6 207 59.9
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 6.5e-61 238.0 295 47.1
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 3.5e-59 232.3 165 66.7
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 4.6e-59 231.9 180 63.9
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 1.0e-58 230.7 235 51.5
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 1.3e-58 230.3 202 55.4
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 1.3e-58 230.3 201 56.2
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 1.8e-58 229.9 201 55.7
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 2.3e-58 229.6 188 56.9
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 2.3e-58 229.6 165 66.7
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 3.0e-58 229.2 201 56.2
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 3.0e-58 229.2 201 56.2
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 6.7e-58 228.0 206 54.4
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 1.9e-57 226.5 201 54.7
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 1.9e-57 226.5 201 54.7
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 2.5e-57 226.1 198 53.5
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 5.7e-57 224.9 205 56.6
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 9.7e-57 224.2 201 54.2
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 3.7e-56 222.2 201 53.7
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 3.1e-55 219.2 216 55.1
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 3.1e-55 219.2 164 62.2
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 6.9e-55 218.0 201 53.2
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 1.2e-54 217.2 198 54.5
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 2.2e-53 213.0 165 61.2
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 2.9e-53 212.6 198 51.0
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 5.0e-53 211.8 201 51.7
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 6.5e-53 211.5 210 51.0
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 1.4e-52 210.3 198 50.0
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 1.9e-52 209.9 176 59.1
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 4.6e-51 205.3 164 58.5
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 7.9e-51 204.5 198 52.0
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 8.8e-50 201.1 183 56.8
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 2.5e-49 199.5 162 59.9
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 2.8e-48 196.1 202 51.5
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 2.8e-48 196.1 198 53.0
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 7.7e-46 188.0 207 49.8
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 2.2e-45 186.4 203 48.3
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 2.9e-45 186.0 199 46.7
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 5.0e-45 185.3 200 47.0
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 1.1e-44 184.1 198 46.0
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 1.4e-44 183.7 162 53.1
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 1.6e-43 180.3 207 45.4
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 3.9e-42 175.6 201 43.3
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 1.3e-40 170.6 203 42.4
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 8.2e-40 167.9 207 44.4
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.4e-39 167.2 204 44.6
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 7.0e-39 164.9 164 54.3
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 4.5e-38 162.2 207 43.5
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 2.5e-36 156.4 208 39.9
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 6.1e-35 151.8 195 40.0
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 8.0e-35 151.4 148 51.4
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 8.8e-34 147.9 206 41.3
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 8.2e-32 141.4 185 44.9
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 1.4e-31 140.6 206 40.3
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 1.8e-31 140.2 196 41.3
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 7.7e-30 134.8 204 39.7
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 8.5e-29 131.3 198 42.4
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 9.4e-28 127.9 207 37.7
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 2.7e-27 126.3 112 56.2
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 1.4e-26 124.0 105 56.2
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.6e-25 119.8 123 50.4
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 5.7e-25 118.6 112 53.6
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 3.7e-24 115.9 109 53.2
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 1.8e-23 113.6 152 43.4
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 1.2e-22 110.9 106 51.9
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 3.5e-22 109.4 119 47.1
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 7.2e-20 101.7 107 49.5
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 2.1e-19 100.1 152 43.4
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 8.0e-19 98.2 125 45.6
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 1.0e-18 97.8 124 46.0
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 3.0e-18 96.3 105 48.6
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 2.6e-17 93.2 168 38.1
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 9.8e-17 91.3 107 45.8
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 9.2e-15 84.7 105 42.9
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 1.5e-12 77.4 146 34.2
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 1.4e-10 70.9 113 38.9
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 1.4e-10 70.9 102 38.2
Ah.16g108650 Amaranthus hybridus HOM05D005414 ORTHO05D006844 5.7e-09 65.5 73 45.2
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 8.3e-08 61.6 76 40.8
Pp3c18_14820 Physcomitrium patens HOM05D005414 ORTHO05D006844 2.4e-07 60.1 42 61.9
Lsat_1_v5_gn_4_15661 Lactuca sativa HOM05D001315 ORTHO05D004199 3.2e-07 59.7 81 46.9
Lsat_1_v5_gn_5_58841 Lactuca sativa HOM05D001315 ORTHO05D004199 3.2e-07 59.7 81 46.9
Lsat_1_v5_gn_6_15761 Lactuca sativa HOM05D001315 ORTHO05D004199 3.2e-07 59.7 81 46.9
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 5.4e-07 58.9 76 39.5


User provided reference genes

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