Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 2119.7 1084 100.0
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1791.9 1173 79.6
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1786.5 1176 79.8
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1770.7 1174 79.5
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1766.9 1175 79.3
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1765.7 1174 79.0
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1765.4 1174 79.0
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1762.3 1175 79.1
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1761.1 1175 78.6
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1753.8 1174 78.3
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1747.3 1176 78.2
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1746.9 1056 84.3
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1740.3 1175 77.3
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1737.6 1182 77.5
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1728.8 1176 77.6
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1726.1 1182 77.7
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1722.6 1176 77.4
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1722.6 1174 77.2
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1721.8 1176 77.4
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1718.7 1176 77.2
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1718.4 1175 76.9
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1711.0 1220 75.3
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1707.2 1171 76.6
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1705.6 1231 73.9
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1704.9 1216 75.3
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1703.0 1220 75.1
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1701.0 1220 75.1
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1686.0 1176 76.1
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1685.2 1175 75.1
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1682.9 1175 75.9
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1669.1 1195 74.4
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1668.7 1177 75.1
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1667.9 1176 75.3
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1667.5 1196 74.2
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1664.8 1057 81.3
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1664.0 1211 72.7
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1663.3 1211 72.7
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1660.6 1176 74.0
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1658.7 1176 75.3
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1654.8 1175 73.9
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1651.3 1173 74.4
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1647.1 1174 74.0
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1644.0 1175 73.5
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1642.9 1175 74.3
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1640.2 1180 74.4
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1639.8 1178 73.5
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1635.2 1175 74.7
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1632.8 1175 73.6
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1631.7 1175 74.3
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1629.8 1175 73.7
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1626.3 1175 74.1
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1617.8 1177 72.9
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1617.8 1173 72.6
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1612.4 1215 71.9
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1612.0 1176 74.0
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1608.2 1176 73.0
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1604.3 1178 72.0
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1601.6 1212 71.6
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1598.9 1180 71.9
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1597.0 1142 73.7
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1596.3 1176 72.1
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1592.8 1234 69.7
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1590.5 1208 71.1
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1587.4 1176 71.4
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1583.2 1175 71.3
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1582.4 1175 71.9
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1582.4 1181 71.3
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1577.4 1162 71.7
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1576.6 1175 71.8
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1575.5 1176 71.3
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1574.7 1078 76.6
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1573.1 1177 70.6
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1573.1 1178 71.2
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1573.1 1175 71.1
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1572.8 1175 71.6
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1572.8 1174 71.7
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1572.4 1176 71.2
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1571.2 1177 71.8
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1568.1 1174 71.7
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1567.4 1177 71.5
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1565.1 1177 71.5
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1562.0 1176 71.8
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1561.2 1177 70.7
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1555.4 1179 71.5
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1553.5 1174 70.4
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1552.0 1180 71.3
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1550.8 1176 71.6
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1550.0 1102 74.4
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1543.9 1206 69.2
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1541.9 1182 70.8
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1541.2 1175 70.6
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1540.4 1080 75.5
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1540.4 1176 70.4
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1539.6 1180 69.7
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1534.6 1180 69.2
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1533.9 1180 69.2
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1525.8 1214 68.4
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1525.0 1185 69.1
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1524.6 1177 68.8
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1520.8 1194 69.2
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1515.7 1182 70.0
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1513.8 1076 74.6
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1510.4 1180 69.3
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1508.4 1181 69.7
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1508.4 1176 69.4
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1491.9 1075 72.7
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1489.6 1092 72.5
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1489.2 1189 68.3
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1486.5 1180 67.3
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1482.2 1178 69.2
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1476.1 1037 76.4
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1474.1 1178 68.7
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1469.9 1191 67.7
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1462.6 1079 72.5
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1457.6 1119 69.8
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1442.2 1181 65.6
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1436.8 1183 65.5
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1436.8 1185 65.7
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1402.5 1083 69.7
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1385.9 1173 64.4
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1359.4 950 75.7
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1344.7 950 74.7
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1328.2 1179 62.9
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1294.3 961 72.2
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1272.7 891 74.6
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1220.3 973 68.3
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1218.0 817 78.0
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1217.2 949 70.3
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1160.6 815 75.1
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1160.2 952 68.3
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1158.7 810 76.0
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1122.1 1074 59.3
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 0.0e+00 1075.8 726 77.8
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 2.6e-307 1058.9 973 62.8
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 8.1e-301 1037.3 809 70.1
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 2.0e-270 936.4 606 81.4
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 2.6e-262 909.4 1171 49.6
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.9e-258 896.0 722 67.5
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 5.5e-249 865.1 1058 48.9
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 1.7e-242 843.6 1119 45.8
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.8e-223 780.4 538 75.8
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.8e-143 514.6 432 65.0
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 1.9e-132 478.0 813 42.8
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.2e-121 442.2 285 80.4
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 1.7e-120 438.3 816 35.9
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 5.4e-119 433.3 360 65.0
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 4.1e-111 407.1 1326 29.3
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 1.1e-92 345.9 307 60.3
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 4.4e-89 334.0 513 42.9
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 8.6e-85 319.7 206 78.2
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 5.6e-84 317.0 309 57.9
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 7.3e-84 316.6 309 57.9
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 2.1e-83 315.1 283 64.7
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.3e-77 295.8 623 36.0
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 1.8e-74 285.4 187 72.7
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 2.1e-70 271.9 257 62.3
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 2.0e-65 255.4 144 87.5
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 7.6e-65 253.4 181 72.4
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 1.4e-63 249.2 186 69.4
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 3.5e-54 218.0 172 69.2
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 7.4e-52 210.3 132 81.8
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 5.9e-49 200.7 118 88.1
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.0e-45 189.9 125 75.2
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 2.8e-43 181.8 229 46.3
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 5.9e-41 174.1 109 77.1
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 1.0e-37 163.3 92 91.3
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 6.9e-34 150.6 94 78.7
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 1.0e-29 136.7 90 78.9
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 1.0e-29 136.7 95 73.7
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 1.0e-29 136.7 95 73.7
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 3.8e-24 118.2 78 76.9
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 5.2e-21 107.8 83 69.9
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 5.9e-17 94.4 107 52.3
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 2.2e-16 92.4 46 84.8
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 6.5e-16 90.9 81 49.4
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 9.4e-15 87.0 139 43.9


User provided reference genes

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