Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G094701 Manihot esculenta HOM05D000963 ORTHO05D004715 7.5e-46 186.8 93 100.0
QL10p017079 Quercus lobata HOM05D000963 ORTHO05D004715 2.4e-28 128.6 73 86.3
QL93p0141_0026 Quercus lobata HOM05D000963 ORTHO05D004715 2.4e-28 128.6 73 86.3
Sed0014585 Sechium edule HOM05D000963 ORTHO05D004715 2.4e-28 128.6 73 86.3
Atru.chr1.3576 Acer truncatum HOM05D000963 ORTHO05D004715 7.1e-28 127.1 73 84.9
Sed0006422 Sechium edule HOM05D000963 ORTHO05D004715 9.2e-28 126.7 73 84.9
AL9U11970 Arabidopsis lyrata HOM05D000963 ORTHO05D004715 1.2e-27 126.3 73 84.9
C09p40280 Brassica napus HOM05D000963 ORTHO05D004715 1.2e-27 126.3 73 84.9
BolSC44t60816H Brassica oleracea HOM05D000963 ORTHO05D004715 1.2e-27 126.3 73 84.9
BolSC44t60829H Brassica oleracea HOM05D000963 ORTHO05D004715 1.2e-27 126.3 73 84.9
BolSC45t60916H Brassica oleracea HOM05D000963 ORTHO05D004715 1.2e-27 126.3 73 84.9
BolSC49t61135H Brassica oleracea HOM05D000963 ORTHO05D004715 1.2e-27 126.3 73 84.9
BraSC103t45422Z Brassica rapa HOM05D000963 ORTHO05D004715 1.2e-27 126.3 73 84.9
BraSC103t45433Z Brassica rapa HOM05D000963 ORTHO05D004715 1.2e-27 126.3 73 84.9
BraSC138t45541Z Brassica rapa HOM05D000963 ORTHO05D004715 1.2e-27 126.3 73 84.9
BraSC25t45904Z Brassica rapa HOM05D000963 ORTHO05D004715 1.2e-27 126.3 73 84.9
BraSC25t45917Z Brassica rapa HOM05D000963 ORTHO05D004715 1.2e-27 126.3 73 84.9
BraSC59t46506Z Brassica rapa HOM05D000963 ORTHO05D004715 1.2e-27 126.3 73 84.9
Lsat_1_v5_gn_1_88180 Lactuca sativa HOM05D000963 ORTHO05D004715 1.2e-27 126.3 70 87.1
Lsat_1_v5_gn_2_50801 Lactuca sativa HOM05D000963 ORTHO05D004715 1.2e-27 126.3 70 87.1
Lsat_1_v5_gn_2_97121 Lactuca sativa HOM05D000963 ORTHO05D004715 1.2e-27 126.3 70 87.1
Lsat_1_v5_gn_5_181901 Lactuca sativa HOM05D000963 ORTHO05D004715 1.2e-27 126.3 70 87.1
Lsat_1_v5_gn_5_4701 Lactuca sativa HOM05D000963 ORTHO05D004715 1.2e-27 126.3 70 87.1
Lsat_1_v5_gn_9_121741 Lactuca sativa HOM05D000963 ORTHO05D004715 1.2e-27 126.3 70 87.1
QL93p0141_0000 Quercus lobata HOM05D000963 ORTHO05D004715 1.2e-27 126.3 73 84.9
Gohir.1Z049781 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.7e-27 125.2 73 83.6
Gohir.A02G134101 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.7e-27 125.2 73 83.6
Gohir.D01G169154 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.7e-27 125.2 73 83.6
Gohir.D11G164850 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.7e-27 125.2 73 83.6
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 6.0e-27 124.0 70 85.7
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 6.0e-27 124.0 70 85.7
Migut.D01391 Erythranthe guttata HOM05D000963 ORTHO05D004715 6.0e-27 124.0 73 83.6
Lsat_1_v5_gn_8_139840 Lactuca sativa HOM05D000963 ORTHO05D004715 6.0e-27 124.0 70 85.7
SalBow1G2814 Salvia bowleyana HOM05D000963 ORTHO05D004715 7.8e-27 123.6 73 83.6
SalBow1G5969 Salvia bowleyana HOM05D000963 ORTHO05D004715 7.8e-27 123.6 73 83.6
BolSC29t60541H Brassica oleracea HOM05D000963 ORTHO05D004715 1.3e-26 122.9 73 82.2
Gohir.D03G074976 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.3e-26 122.9 73 80.8
BolC9t56918H Brassica oleracea HOM05D000963 ORTHO05D004715 2.3e-26 122.1 73 83.6
COL.COLO4_02154 Corchorus olitorius HOM05D000963 ORTHO05D004715 2.3e-26 122.1 73 82.2
BolSC37t60787H Brassica oleracea HOM05D000963 ORTHO05D004715 3.0e-26 121.7 74 83.8
Lsat_1_v5_gn_2_90421 Lactuca sativa HOM05D000963 ORTHO05D004715 3.0e-26 121.7 70 84.3
Gohir.A01G119775 Gossypium hirsutum HOM05D000963 ORTHO05D004715 3.9e-26 121.3 73 80.8
CAN.G929.1 Capsicum annuum HOM05D000963 ORTHO05D004715 5.1e-26 120.9 74 83.8
Potri.002G263451 Populus trichocarpa HOM05D000963 ORTHO05D004715 5.1e-26 120.9 73 80.8
Sopen06g015060 Solanum pennellii HOM05D000963 ORTHO05D004715 5.1e-26 120.9 74 83.8
PGSC0003DMG400034831 Solanum tuberosum HOM05D000963 ORTHO05D004715 5.1e-26 120.9 74 83.8
Oeu050315.1 Olea europaea HOM05D000963 ORTHO05D004715 8.6e-26 120.2 68 85.3
Sabra11G0069300 Salix brachista HOM05D000963 ORTHO05D004715 1.1e-25 119.8 65 86.2
SabraPtG0005400 Salix brachista HOM05D000963 ORTHO05D004715 1.1e-25 119.8 65 86.2
CAN.G1298.20 Capsicum annuum HOM05D000963 ORTHO05D004715 1.5e-25 119.4 74 82.4
FAN13G1706 Fragaria x ananassa HOM05D000963 ORTHO05D004715 1.9e-25 119.0 69 82.6
Gorai.012G060700 Gossypium raimondii HOM05D000963 ORTHO05D004715 2.5e-25 118.6 73 78.1
FvH4_c3g00050 Fragaria vesca HOM05D000963 ORTHO05D004715 4.3e-25 117.9 69 82.6
Sed0003522 Sechium edule HOM05D000963 ORTHO05D004715 5.6e-25 117.5 62 88.7
BraSC59t46533Z Brassica rapa HOM05D000963 ORTHO05D004715 9.5e-25 116.7 73 79.5
Sed0012027 Sechium edule HOM05D000963 ORTHO05D004715 1.4e-23 112.8 73 79.5
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 1.5e-22 109.4 76 72.4
HPP92_028430 Vanilla planifolia HOM05D000963 ORTHO05D004715 9.9e-22 106.7 73 71.2
Cpa.g.sc302.1 Carica papaya HOM05D000963 ORTHO05D004715 1.3e-21 106.3 62 85.5
Nitab4.5_0008665g0030 Nicotiana tabacum HOM05D000963 ORTHO05D004715 1.7e-21 105.9 74 74.3
BolSC46t60965H Brassica oleracea HOM05D000963 ORTHO05D004715 2.9e-21 105.1 61 85.2
Nitab4.5_0004137g0020 Nicotiana tabacum HOM05D000963 ORTHO05D004715 2.9e-21 105.1 76 73.7
CAN.G965.10 Capsicum annuum HOM05D000963 ORTHO05D004715 3.7e-21 104.8 74 75.7
BraSC59t46544Z Brassica rapa HOM05D000963 ORTHO05D004715 8.4e-21 103.6 68 76.5
BolSC29t60514H Brassica oleracea HOM05D000963 ORTHO05D004715 1.1e-20 103.2 61 83.6
Oeu012821.1 Olea europaea HOM05D000963 ORTHO05D004715 2.4e-20 102.1 71 73.2
BolSC29t60553H Brassica oleracea HOM05D000963 ORTHO05D004715 4.1e-20 101.3 59 84.7
BraSC143t45652Z Brassica rapa HOM05D000963 ORTHO05D004715 4.1e-20 101.3 59 84.7
Sed0011513 Sechium edule HOM05D000963 ORTHO05D004715 5.4e-20 100.9 60 83.3
BolC2t10589H Brassica oleracea HOM05D000963 ORTHO05D004715 3.5e-19 98.2 61 80.3
Potri.011G074033 Populus trichocarpa HOM05D000963 ORTHO05D004715 3.5e-19 98.2 52 88.5
Gohir.A07G151200 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.0e-18 96.7 52 86.5
BolSC35t60711H Brassica oleracea HOM05D000963 ORTHO05D004715 1.3e-18 96.3 68 72.1
Medtr5g080940 Medicago truncatula HOM05D000963 ORTHO05D004715 1.3e-18 96.3 71 71.8
Gohir.A04G057626 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.7e-18 95.9 52 86.5
BolSC49t61150H Brassica oleracea HOM05D000963 ORTHO05D004715 3.0e-18 95.1 61 78.7
BolSC45t60901H Brassica oleracea HOM05D000963 ORTHO05D004715 5.1e-18 94.4 68 70.6
Aqoxy38s008 Aquilegia oxysepala HOM05D000963 ORTHO05D004715 1.1e-17 93.2 52 84.6
HPP92_028419 Vanilla planifolia HOM05D000963 ORTHO05D004715 1.9e-17 92.4 52 80.8
HPP92_028432 Vanilla planifolia HOM05D000963 ORTHO05D004715 1.9e-17 92.4 52 80.8
COL.COLO4_03191 Corchorus olitorius HOM05D000963 ORTHO05D004715 3.3e-17 91.7 65 72.3
BolC2t10606H Brassica oleracea HOM05D000963 ORTHO05D004715 9.6e-17 90.1 69 69.6
Gohir.D04G096676 Gossypium hirsutum HOM05D000963 ORTHO05D004715 9.6e-17 90.1 52 78.8
Sabra08G0089800 Salix brachista HOM05D000963 ORTHO05D004715 1.2e-16 89.7 49 87.8
HPP92_028383 Vanilla planifolia HOM05D000963 ORTHO05D004715 2.1e-16 89.0 52 78.8
HPP92_028406 Vanilla planifolia HOM05D000963 ORTHO05D004715 2.1e-16 89.0 52 78.8
HPP92_028415 Vanilla planifolia HOM05D000963 ORTHO05D004715 2.1e-16 89.0 52 78.8
Gohir.D04G054150 Gossypium hirsutum HOM05D000963 ORTHO05D004715 8.1e-16 87.0 52 80.8
Oeu033793.1 Olea europaea HOM05D001982 ORTHO05D003938 1.8e-15 85.9 52 80.8
EL10Ac7g17374 Beta vulgaris HOM05D000963 ORTHO05D004715 4.0e-15 84.7 59 74.6
Nitab4.5_0007400g0120 Nicotiana tabacum HOM05D000963 ORTHO05D004715 5.2e-15 84.3 72 66.7
CAN.G67.2 Capsicum annuum HOM05D000963 ORTHO05D004715 6.8e-15 84.0 67 67.2
arahy.Tifrunner.gnm1.ann1.D5AR02 Arachis hypogaea HOM05D000963 ORTHO05D004715 1.2e-14 83.2 73 63.0
Gohir.A05G286366 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.2e-14 83.2 46 87.0
C09p39330 Brassica napus HOM05D000963 ORTHO05D004715 2.0e-14 82.4 73 63.0
FAN01G1433 Fragaria x ananassa HOM05D000963 ORTHO05D004715 2.6e-14 82.0 45 84.4
Sc01g0005720 Simmondsia chinensis HOM05D000963 ORTHO05D004715 9.9e-14 80.1 52 75.0
EL10Ac7g17381 Beta vulgaris HOM05D000963 ORTHO05D004715 1.3e-13 79.7 59 71.2
Nitab4.5_0012234g0080 Nicotiana tabacum HOM05D000963 ORTHO05D004715 6.4e-13 77.4 73 60.3
Oeu015131.2 Olea europaea HOM05D000963 ORTHO05D004715 6.4e-13 77.4 52 75.0
Gohir.A01G139826 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.4e-12 76.3 73 58.9
BraSC58t46456Z Brassica rapa HOM05D000963 ORTHO05D004715 5.4e-12 74.3 36 94.4
DCAR_014935 Daucus carota HOM05D000963 ORTHO05D004715 2.1e-11 72.4 36 94.4
FvH4_7g01961 Fragaria vesca HOM05D000963 ORTHO05D004715 2.1e-11 72.4 61 59.0
FAN06G2610 Fragaria x ananassa HOM05D000963 ORTHO05D004715 2.1e-11 72.4 61 59.0
Actinidia23508 Actinidia chinensis HOM05D000963 ORTHO05D004715 3.5e-11 71.6 36 91.7
Gohir.A04G039030 Gossypium hirsutum HOM05D000963 ORTHO05D004715 3.5e-11 71.6 36 91.7
Dinv39831 Davidia involucrata HOM05D000963 ORTHO05D004715 4.6e-11 71.2 36 91.7
CsaV3_2G008200 Cucumis sativus L. HOM05D000963 ORTHO05D004715 1.7e-10 69.3 36 86.1
Gohir.D01G023469 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.3e-10 68.9 36 88.9
CSS0016818 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D004715 5.1e-10 67.8 44 77.3
Lsat_1_v5_gn_1_109481 Lactuca sativa HOM05D000963 ORTHO05D004715 6.6e-10 67.4 35 88.6
arahy.Tifrunner.gnm1.ann1.0QCF99 Arachis hypogaea HOM05D000963 ORTHO05D004715 4.3e-09 64.7 36 86.1
arahy.Tifrunner.gnm1.ann1.0S9V2W Arachis hypogaea HOM05D000963 ORTHO05D004715 4.3e-09 64.7 36 86.1
arahy.Tifrunner.gnm1.ann1.54C0KZ Arachis hypogaea HOM05D000963 ORTHO05D004715 4.3e-09 64.7 36 86.1
arahy.Tifrunner.gnm1.ann1.56M0GV Arachis hypogaea HOM05D000963 ORTHO05D004715 4.3e-09 64.7 36 86.1
arahy.Tifrunner.gnm1.ann1.6K111H Arachis hypogaea HOM05D000963 ORTHO05D004715 4.3e-09 64.7 36 86.1
arahy.Tifrunner.gnm1.ann1.B9EW81 Arachis hypogaea HOM05D000963 ORTHO05D004715 4.3e-09 64.7 36 86.1
arahy.Tifrunner.gnm1.ann1.E29LBX Arachis hypogaea HOM05D000963 ORTHO05D004715 4.3e-09 64.7 36 86.1
arahy.Tifrunner.gnm1.ann1.NMB5YK Arachis hypogaea HOM05D000963 ORTHO05D004715 4.3e-09 64.7 36 86.1
arahy.Tifrunner.gnm1.ann1.NRNC1F Arachis hypogaea HOM05D000963 ORTHO05D004715 4.3e-09 64.7 36 86.1
arahy.Tifrunner.gnm1.ann1.PH4GL6 Arachis hypogaea HOM05D000963 ORTHO05D004715 4.3e-09 64.7 36 86.1
arahy.Tifrunner.gnm1.ann1.QIDR5S Arachis hypogaea HOM05D000963 ORTHO05D004715 4.3e-09 64.7 36 86.1
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 4.3e-09 64.7 36 86.1
arahy.Tifrunner.gnm1.ann1.RS9AFF Arachis hypogaea HOM05D000963 ORTHO05D004715 4.3e-09 64.7 36 86.1
arahy.Tifrunner.gnm1.ann1.TDDH8C Arachis hypogaea HOM05D000963 ORTHO05D004715 4.3e-09 64.7 36 86.1
arahy.Tifrunner.gnm1.ann1.UGP0DD Arachis hypogaea HOM05D000963 ORTHO05D004715 4.3e-09 64.7 36 86.1
arahy.Tifrunner.gnm1.ann1.WD30LQ Arachis hypogaea HOM05D000963 ORTHO05D004715 4.3e-09 64.7 36 86.1
arahy.Tifrunner.gnm1.ann1.ZA1EMG Arachis hypogaea HOM05D000963 ORTHO05D004715 4.3e-09 64.7 36 86.1
BolSC43t60811H Brassica oleracea HOM05D000963 ORTHO05D004715 5.6e-09 64.3 41 78.0
Gorai.002G027900 Gossypium raimondii HOM05D000963 ORTHO05D004715 1.3e-08 63.2 36 83.3
Dinv05169 Davidia involucrata HOM05D000963 ORTHO05D004715 1.6e-08 62.8 36 86.1
Oeu054713.1 Olea europaea HOM05D000963 ORTHO05D004715 1.6e-08 62.8 41 78.0
arahy.Tifrunner.gnm1.ann1.WSE485 Arachis hypogaea HOM05D000963 ORTHO05D004715 2.1e-08 62.4 36 83.3
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 4.8e-08 61.2 36 80.6
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 4.8e-08 61.2 36 80.6
Thecc.09G087300 Theobroma cacao HOM05D000963 ORTHO05D004715 4.8e-08 61.2 38 78.9
BraSC179t45779Z Brassica rapa HOM05D000963 ORTHO05D004715 1.4e-07 59.7 39 76.9
Lj4g0000207 Lotus japonicus HOM05D000963 ORTHO05D004715 1.8e-07 59.3 36 80.6
FAN18G1953 Fragaria x ananassa HOM05D000315 ORTHO05D004100 5.3e-07 57.8 41 70.7
Phvul.003G259600 Phaseolus vulgaris HOM05D000963 ORTHO05D004715 6.9e-07 57.4 34 79.4
Migut.N00577 Erythranthe guttata HOM05D000963 ORTHO05D004715 9.0e-07 57.0 39 74.4
arahy.Tifrunner.gnm1.ann1.LM30Y3 Arachis hypogaea HOM05D000963 ORTHO05D004715 1.5e-06 56.2 36 77.8
arahy.Tifrunner.gnm1.ann1.HN8ZWX Arachis hypogaea HOM05D000963 ORTHO05D004715 2.6e-06 55.5 36 75.0


User provided reference genes

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