Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 4.1e-75 285.0 189 100.0
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 1.2e-61 240.4 190 87.4
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 4.4e-61 238.4 189 86.2
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 4.9e-60 235.0 190 81.6
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 5.4e-59 231.5 190 81.6
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 6.2e-55 218.0 190 81.6
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 3.4e-53 212.2 192 64.1
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 3.4e-53 212.2 192 65.1
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 4.4e-53 211.8 189 74.1
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 7.5e-53 211.1 192 65.6
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 2.4e-51 206.1 189 61.4
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 7.1e-51 204.5 189 78.3
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 7.1e-51 204.5 189 68.3
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 1.2e-50 203.8 189 60.8
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 2.1e-50 203.0 189 73.5
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 3.5e-50 202.2 191 66.5
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 4.6e-50 201.8 196 71.9
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 6.0e-50 201.4 191 77.0
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 6.0e-50 201.4 194 77.3
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 1.0e-49 200.7 191 80.1
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 1.0e-49 200.7 194 74.2
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 1.3e-49 200.3 194 70.1
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 2.3e-49 199.5 189 64.6
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 3.9e-49 198.7 189 70.9
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 3.9e-49 198.7 195 71.8
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 5.1e-49 198.4 189 76.2
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 5.1e-49 198.4 199 57.8
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 6.6e-49 198.0 196 71.9
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 8.6e-49 197.6 196 71.9
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 1.5e-48 196.8 190 58.9
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 2.5e-48 196.1 197 61.4
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 2.5e-48 196.1 189 67.2
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 4.3e-48 195.3 190 61.1
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 7.3e-48 194.5 195 76.4
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 1.6e-47 193.4 192 77.1
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 1.6e-47 193.4 194 72.2
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 2.1e-47 193.0 191 68.1
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 3.6e-47 192.2 194 64.4
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 4.7e-47 191.8 195 70.8
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 4.7e-47 191.8 192 69.8
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 4.7e-47 191.8 192 76.0
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 6.2e-47 191.4 192 71.9
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 8.1e-47 191.0 195 76.4
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 8.1e-47 191.0 191 67.0
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 8.1e-47 191.0 191 68.6
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 1.4e-46 190.3 191 61.3
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 2.4e-46 189.5 191 67.0
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 3.1e-46 189.1 193 67.4
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 5.2e-46 188.3 194 76.3
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 8.9e-46 187.6 192 60.4
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 8.9e-46 187.6 191 58.6
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 1.2e-45 187.2 198 63.1
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.5e-45 186.8 192 59.9
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 2.0e-45 186.4 190 71.6
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 2.0e-45 186.4 191 64.9
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 4.4e-45 185.3 189 65.1
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 4.4e-45 185.3 152 73.7
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 9.9e-45 184.1 191 68.1
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 9.9e-45 184.1 193 65.3
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.3e-44 183.7 191 69.6
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.7e-44 183.3 189 70.4
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 1.7e-44 183.3 190 58.9
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 1.7e-44 183.3 145 77.9
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.7e-44 183.3 190 68.4
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 2.2e-44 183.0 192 66.7
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 2.9e-44 182.6 190 66.3
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 2.9e-44 182.6 197 70.6
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 3.8e-44 182.2 191 63.9
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 4.9e-44 181.8 189 70.9
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 4.9e-44 181.8 193 66.8
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 4.9e-44 181.8 142 68.3
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 8.4e-44 181.0 191 64.4
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 1.1e-43 180.6 191 65.4
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 1.9e-43 179.9 151 76.8
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 1.9e-43 179.9 142 67.6
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 3.2e-43 179.1 200 63.5
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 3.2e-43 179.1 190 70.5
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 4.2e-43 178.7 191 63.4
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 5.4e-43 178.3 191 64.4
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 5.4e-43 178.3 191 62.8
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 5.4e-43 178.3 193 63.7
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 7.1e-43 177.9 190 65.8
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 7.1e-43 177.9 152 71.1
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 7.1e-43 177.9 190 70.0
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 7.1e-43 177.9 189 61.4
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 1.2e-42 177.2 188 57.4
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 1.6e-42 176.8 191 66.0
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.6e-42 176.8 139 81.3
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 2.1e-42 176.4 189 68.3
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 2.1e-42 176.4 191 64.9
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 2.1e-42 176.4 189 68.3
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 2.1e-42 176.4 189 63.5
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 2.7e-42 176.0 191 60.7
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 3.5e-42 175.6 191 62.3
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 4.6e-42 175.3 191 72.3
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 6.0e-42 174.9 190 67.4
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 6.0e-42 174.9 191 60.2
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 1.0e-41 174.1 196 62.2
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 1.7e-41 173.3 184 60.9
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 2.3e-41 172.9 190 66.3
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 2.3e-41 172.9 151 73.5
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 3.0e-41 172.6 189 72.0
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 3.0e-41 172.6 191 60.2
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.0e-41 172.6 188 73.4
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 5.1e-41 171.8 189 67.7
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 8.7e-41 171.0 189 67.2
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 1.5e-40 170.2 182 67.6
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 1.9e-40 169.9 190 65.3
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 4.7e-39 165.2 190 68.9
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 4.7e-39 165.2 196 55.6
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 8.1e-39 164.5 143 75.5
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 8.1e-39 164.5 171 74.9
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 1.4e-38 163.7 193 62.2
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 3.4e-37 159.1 165 62.4
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 4.4e-37 158.7 224 59.8
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 4.4e-37 158.7 138 64.5
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 4.4e-37 158.7 85 90.6
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 5.8e-37 158.3 195 55.4
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 4.9e-36 155.2 150 62.7
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 6.4e-36 154.8 96 79.2
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 1.1e-35 154.1 170 52.4
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 5.4e-35 151.8 94 81.9
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 5.4e-35 151.8 192 58.9
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 2.7e-34 149.4 126 78.6
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 4.5e-29 132.1 75 85.3
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 4.5e-29 132.1 70 88.6
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 9.9e-29 131.0 69 88.4
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 2.1e-26 123.2 157 64.3
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 1.0e-25 120.9 149 63.8
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 1.6e-23 113.6 114 71.1
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 1.4e-22 110.5 112 58.0
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 1.4e-22 110.5 82 64.6
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 1.5e-21 107.1 176 57.4
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 2.2e-20 103.2 65 75.4
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 4.9e-20 102.1 70 74.3
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 1.4e-19 100.5 188 47.3
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 1.9e-19 100.1 120 65.8
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 4.2e-19 99.0 80 60.0
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 6.0e-18 95.1 150 60.0
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 1.3e-17 94.0 82 54.9
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 6.7e-17 91.7 80 52.5
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 2.1e-15 86.7 56 78.6
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 3.5e-10 69.3 67 52.2
Pp3c2_26700 Physcomitrium patens HOM05D005519 ORTHO05D006423 2.2e-07 60.1 106 54.7
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 3.7e-07 59.3 39 61.5


User provided reference genes

Program Settings