Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 0.0e+00 1188.3 603 100.0
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 7.5e-288 993.4 628 81.2
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 1.4e-286 989.2 614 81.9
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 8.9e-281 969.9 628 79.1
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 5.9e-277 957.2 614 79.8
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 2.7e-269 931.8 615 77.9
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 2.7e-269 931.8 615 77.9
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 3.3e-267 924.9 615 77.2
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 5.6e-267 924.1 609 78.3
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 7.3e-267 923.7 622 77.2
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 9.5e-267 923.3 620 76.8
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 1.4e-265 919.5 634 76.5
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 1.4e-265 919.5 611 78.4
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 1.8e-265 919.1 616 77.8
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 1.1e-262 909.8 614 76.7
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 1.4e-262 909.4 614 77.0
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 2.4e-262 908.7 621 76.8
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 9.2e-262 906.7 614 76.7
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 3.5e-261 904.8 613 77.3
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 7.8e-261 903.7 612 76.8
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 1.0e-260 903.3 628 75.2
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 2.3e-260 902.1 612 76.8
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 4.3e-259 897.9 613 76.0
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.6e-258 896.0 612 76.1
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 6.2e-258 894.0 608 76.0
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 8.1e-258 893.6 616 76.0
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 1.1e-257 893.3 622 74.6
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 1.4e-257 892.9 611 76.4
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 2.3e-257 892.1 623 75.0
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 4.4e-256 887.9 611 75.3
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 4.9e-255 884.4 646 72.3
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 1.9e-254 882.5 611 75.0
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 5.4e-254 880.9 630 73.8
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 9.2e-254 880.2 613 75.5
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.7e-253 878.6 611 75.1
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 6.0e-253 877.5 611 74.8
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 1.0e-252 876.7 633 74.2
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 1.0e-252 876.7 633 74.2
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 1.0e-252 876.7 634 73.0
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 1.7e-252 875.9 630 74.1
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 3.9e-252 874.8 611 75.9
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 3.9e-252 874.8 649 71.0
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.5e-251 872.8 611 74.5
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 2.5e-251 872.1 611 75.6
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 2.6e-248 862.1 636 70.9
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 2.9e-247 858.6 610 73.6
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 9.2e-246 853.6 637 71.4
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 5.1e-244 847.8 610 73.1
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 1.9e-243 845.9 759 61.8
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 2.5e-243 845.5 610 73.4
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 2.8e-242 842.0 617 72.8
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 4.0e-241 838.2 637 70.3
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 5.3e-241 837.8 611 73.8
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 5.3e-241 837.8 625 71.2
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 9.0e-241 837.0 622 70.9
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 1.5e-240 836.3 635 70.2
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 1.7e-239 832.8 613 71.5
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 7.1e-238 827.4 623 69.7
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.6e-237 826.2 612 72.1
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 1.7e-236 822.8 636 69.5
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 3.0e-236 822.0 619 69.0
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 3.9e-236 821.6 507 80.9
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 8.7e-236 820.5 619 71.4
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 6.2e-234 814.3 637 67.2
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 6.9e-233 810.8 631 66.7
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 2.6e-232 808.9 579 72.4
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 3.4e-232 808.5 624 67.9
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 1.9e-230 802.7 646 65.8
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 4.2e-230 801.6 618 68.9
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 5.4e-230 801.2 630 66.2
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 3.5e-229 798.5 617 69.7
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 2.3e-228 795.8 649 65.5
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 3.9e-228 795.0 636 67.5
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 3.3e-227 792.0 624 68.6
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 5.6e-227 791.2 635 66.6
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 3.7e-226 788.5 627 66.0
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 4.8e-226 788.1 626 66.1
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 6.2e-226 787.7 608 68.3
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 1.1e-225 786.9 624 67.6
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 1.8e-225 786.2 622 67.4
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 3.1e-225 785.4 608 68.1
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 4.0e-225 785.0 619 68.5
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 9.0e-225 783.9 611 67.3
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 1.2e-224 783.5 617 67.7
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 9.9e-224 780.4 618 67.3
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 3.8e-223 778.5 610 67.7
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 4.9e-223 778.1 608 67.8
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 4.9e-223 778.1 608 67.8
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 1.1e-222 776.9 645 64.7
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 1.9e-222 776.2 573 71.0
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 7.1e-222 774.2 619 66.1
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 2.1e-221 772.7 651 63.7
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 2.1e-221 772.7 628 65.6
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 2.1e-221 772.7 641 64.1
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 4.6e-221 771.5 602 68.4
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 1.3e-220 770.0 643 62.8
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 4.0e-217 758.4 620 65.6
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 1.0e-215 753.8 642 62.5
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 1.7e-215 753.1 489 78.5
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 2.5e-214 749.2 614 64.7
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 6.7e-212 741.1 569 68.9
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 1.9e-211 739.6 652 61.0
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 2.6e-208 729.2 618 62.9
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 2.5e-206 722.6 618 62.8
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 2.8e-202 709.1 459 77.1
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 2.6e-200 702.6 636 61.6
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 7.4e-195 684.5 641 58.5
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 1.4e-193 680.2 429 79.7
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 3.5e-192 675.6 605 61.0
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 6.5e-191 671.4 615 59.2
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 1.2e-189 667.2 680 55.9
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 2.3e-188 662.9 809 48.5
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.7e-186 656.8 397 80.6
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 9.4e-182 641.0 547 64.0
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 4.0e-180 635.6 624 58.8
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 1.3e-178 630.6 459 68.6
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 1.0e-175 620.9 627 57.1
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 7.5e-171 604.7 606 55.0
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 2.2e-170 603.2 455 67.9
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 3.7e-170 602.4 614 56.0
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 2.0e-163 580.1 362 77.9
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 2.2e-162 576.6 653 48.9
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 7.0e-161 571.6 315 87.3
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 1.5e-158 563.9 645 49.5
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 1.2e-157 560.8 642 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 1.7e-154 550.4 674 47.2
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 5.4e-153 545.4 300 86.3
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 1.1e-145 521.2 315 80.0
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 5.8e-131 472.2 315 73.0
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 6.0e-128 462.2 588 45.6
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 1.8e-124 450.7 300 72.3
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 1.6e-112 411.0 312 69.6
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 1.9e-102 377.5 259 70.7
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 1.9e-102 377.5 259 70.7
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 2.2e-66 257.7 227 62.6
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 8.0e-56 222.6 344 37.8
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 3.8e-50 203.8 243 53.5
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 6.4e-45 186.4 167 66.5
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 8.6e-34 149.4 178 49.4
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 4.4e-30 137.1 316 32.6
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 7.5e-30 136.3 193 49.2
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 9.8e-30 136.0 87 72.4
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 4.6e-27 127.1 157 53.5
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 6.6e-26 123.2 295 32.9
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 4.1e-20 104.0 92 65.2
SEGI_31186 Sequoiadendron giganteum HOM05D004716 ORTHO05D005646 1.6e-16 92.0 148 49.3
CSS0021208 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 4.7e-16 90.5 147 44.9
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 4.7e-16 90.5 138 50.0
Psat6g193080 Pisum sativum HOM05D000257 ORTHO05D008537 4.4e-14 84.0 67 64.2
Oeu014494.1 Olea europaea HOM05D004716 ORTHO05D005646 2.7e-11 74.7 148 42.6
HanXRQChr10g0277851 Helianthus annuus HOM05D004716 ORTHO05D005646 6.0e-11 73.6 110 48.2
PGSC0003DMG401024092 Solanum tuberosum HOM05D004716 ORTHO05D005646 6.2e-08 63.5 160 31.9


User provided reference genes

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