Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 5.8e-36 153.7 76 100.0
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 4.7e-22 107.5 75 76.0
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 2.3e-16 88.6 65 61.5
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 3.9e-16 87.8 76 68.4
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 5.1e-16 87.4 80 55.0
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 5.1e-16 87.4 77 63.6
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 1.1e-15 86.3 79 57.0
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 3.3e-15 84.7 79 53.2
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 4.3e-15 84.3 65 61.5
CiPaw.15G019000 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.6e-14 82.4 80 57.5
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 1.6e-14 82.4 63 60.3
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 2.1e-14 82.0 81 55.6
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 3.6e-14 81.3 77 61.0
QL02p024551 Quercus lobata HOM05D004540 ORTHO05D004852 2.4e-13 78.6 76 55.3
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 5.2e-13 77.4 65 56.9
Hma1.2p1_0483F.1_g162780 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 1.5e-12 75.9 70 51.4
Sabra02G0055000 Salix brachista HOM05D004540 ORTHO05D004852 2.0e-12 75.5 67 61.2
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.6e-12 75.1 79 51.9
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 7.6e-12 73.6 79 51.9
Hma1.2p1_1454F.1_g284340 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 7.6e-12 73.6 70 50.0
arahy.Tifrunner.gnm1.ann1.M3AF87 Arachis hypogaea HOM05D004540 ORTHO05D004852 1.7e-11 72.4 75 53.3
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.8e-11 71.2 70 54.3
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.8e-11 71.2 70 54.3
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 3.8e-11 71.2 70 54.3
Lj5g0026068 Lotus japonicus HOM05D004540 ORTHO05D004852 4.9e-11 70.9 74 54.1
MD05G1020400 Malus domestica HOM05D019963 ORTHO05D004852 4.9e-11 70.9 88 51.1
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 8.4e-11 70.1 67 61.2
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 8.4e-11 70.1 69 53.6
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 8.4e-11 70.1 65 50.8
Glyma.02G084000 Glycine max HOM05D004540 ORTHO05D004852 1.4e-10 69.3 72 50.0
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 1.9e-10 68.9 88 48.9
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 2.4e-10 68.6 75 54.7
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 2.4e-10 68.6 70 52.9
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 5.4e-10 67.4 73 47.9
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 5.4e-10 67.4 72 50.0
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 9.2e-10 66.6 70 51.4
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 9.2e-10 66.6 73 49.3
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 1.2e-09 66.2 69 50.7
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.6e-09 65.9 67 55.2
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 1.6e-09 65.9 74 50.0
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 2.1e-09 65.5 70 51.4
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.1e-09 65.5 67 53.7
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 3.5e-09 64.7 82 46.3
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 6.0e-09 63.9 61 57.4
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 6.0e-09 63.9 67 52.2
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 7.8e-09 63.5 68 54.4
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 7.8e-09 63.5 67 50.7
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 7.8e-09 63.5 75 46.7
Gohir.A05G242250 Gossypium hirsutum HOM05D037961 ORTHO05D004852 7.8e-09 63.5 73 47.9
Gohir.D05G243600 Gossypium hirsutum HOM05D037961 ORTHO05D004852 7.8e-09 63.5 73 47.9
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 7.8e-09 63.5 65 50.8
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.0e-08 63.2 74 45.9
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 1.0e-08 63.2 70 48.6
Lalb_Chr03g0035181 Lupinus albus HOM05D004540 ORTHO05D004852 1.0e-08 63.2 71 50.7
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 1.3e-08 62.8 82 45.1
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 1.3e-08 62.8 82 45.1
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 1.3e-08 62.8 82 45.1
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 1.3e-08 62.8 82 45.1
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 1.3e-08 62.8 75 46.7
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.3e-08 62.8 75 46.7
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.3e-08 62.0 72 48.6
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 2.3e-08 62.0 58 55.2
Gorai.009G252900 Gossypium raimondii HOM05D037961 ORTHO05D004852 2.3e-08 62.0 73 46.6
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 3.0e-08 61.6 69 50.7
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 3.9e-08 61.2 79 46.8
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 3.9e-08 61.2 70 50.0
TPR.G10141 Trifolium pratense HOM05D004540 ORTHO05D004852 3.9e-08 61.2 64 53.1
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 5.1e-08 60.8 75 44.0
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 5.1e-08 60.8 66 48.5
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 6.6e-08 60.5 56 57.1
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 8.7e-08 60.1 73 43.8
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 1.1e-07 59.7 77 46.8
Cpa.g.sc49.40 Carica papaya HOM05D004540 ORTHO05D004852 1.1e-07 59.7 71 47.9
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 1.1e-07 59.7 70 51.4
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.9e-07 58.9 67 47.8
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.5e-07 58.5 76 46.1
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 2.5e-07 58.5 71 45.1
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.3e-07 58.2 76 46.1
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 3.3e-07 58.2 76 46.1
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 4.3e-07 57.8 62 46.8
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 5.6e-07 57.4 70 47.1
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 5.6e-07 57.4 70 47.1
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 5.6e-07 57.4 70 47.1
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 5.6e-07 57.4 73 46.6
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 9.6e-07 56.6 62 45.2
TPR.G36647 Trifolium pratense HOM05D004540 ORTHO05D004852 9.6e-07 56.6 74 47.3
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 1.2e-06 56.2 68 48.5
arahy.Tifrunner.gnm1.ann1.5PR57S Arachis hypogaea HOM05D007320 ORTHO05D009290 2.1e-06 55.5 72 45.8
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 2.1e-06 55.5 73 45.2
FvH4_2g14270 Fragaria vesca HOM05D019963 ORTHO05D004852 2.1e-06 55.5 36 66.7
FAN15G2004 Fragaria x ananassa HOM05D019963 ORTHO05D004852 2.1e-06 55.5 36 66.7
FAN24G1587 Fragaria x ananassa HOM05D019963 ORTHO05D004852 2.1e-06 55.5 36 66.7
FAN27G0078 Fragaria x ananassa HOM05D019963 ORTHO05D004852 2.1e-06 55.5 36 66.7
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 2.1e-06 55.5 70 42.9
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 2.8e-06 55.1 66 51.5
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 4.7e-06 54.3 68 42.6
Migut.C00992 Erythranthe guttata HOM05D004540 ORTHO05D004852 4.7e-06 54.3 90 42.2
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 4.7e-06 54.3 51 54.9
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 6.2e-06 53.9 73 43.8
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 6.2e-06 53.9 73 43.8
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 6.2e-06 53.9 73 43.8
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 6.2e-06 53.9 46 56.5
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 6.2e-06 53.9 54 50.0
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 6.2e-06 53.9 67 47.8
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 8.1e-06 53.5 72 40.3
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 8.1e-06 53.5 48 52.1


User provided reference genes

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