Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 3.2e-113 411.8 210 100.0
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 9.8e-78 293.9 211 76.8
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 6.6e-74 281.2 214 69.6
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 2.5e-73 279.3 222 65.3
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 2.5e-73 279.3 212 70.3
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 7.3e-73 277.7 215 70.2
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 1.2e-72 276.9 212 69.8
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 2.1e-72 276.2 210 66.7
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 4.7e-72 275.0 212 71.7
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 1.1e-71 273.9 221 65.6
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 1.4e-71 273.5 221 68.8
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 2.3e-71 272.7 210 70.0
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.3e-71 272.7 221 65.6
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 6.8e-71 271.2 214 71.5
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.5e-70 270.0 222 65.8
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 3.4e-70 268.9 212 67.9
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 3.4e-70 268.9 212 67.9
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 5.8e-70 268.1 212 67.9
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 8.3e-69 264.2 230 65.2
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 1.9e-68 263.1 208 70.2
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 2.4e-68 262.7 214 68.7
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 2.4e-68 262.7 219 65.3
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 4.1e-68 261.9 219 64.4
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 9.2e-68 260.8 208 66.8
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 1.6e-67 260.0 214 66.8
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 6.0e-67 258.1 209 67.5
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 2.3e-66 256.1 214 64.5
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 2.3e-66 256.1 209 65.1
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 5.1e-66 255.0 207 67.1
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 4.3e-65 251.9 210 63.3
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 7.3e-65 251.1 210 66.7
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 3.1e-63 245.7 206 66.5
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 8.9e-63 244.2 283 55.1
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 1.2e-62 243.8 212 65.6
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 1.2e-62 243.8 217 61.8
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 2.0e-62 243.0 211 64.5
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 2.6e-62 242.7 211 63.0
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 2.6e-62 242.7 206 64.6
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 3.4e-62 242.3 210 61.4
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 9.9e-62 240.7 208 63.5
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 1.7e-61 240.0 225 60.4
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 1.7e-61 240.0 219 59.8
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 3.8e-61 238.8 221 60.6
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 8.4e-61 237.7 231 61.9
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 8.4e-61 237.7 155 78.7
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 1.1e-60 237.3 215 61.9
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 1.1e-60 237.3 210 61.0
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 1.4e-60 236.9 175 69.1
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 3.2e-60 235.7 205 60.0
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 7.1e-60 234.6 220 58.6
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 7.1e-60 234.6 254 54.3
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 2.1e-59 233.0 222 57.2
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 2.7e-59 232.6 213 59.2
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 3.5e-59 232.3 207 60.9
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 6.0e-59 231.5 216 59.7
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 7.8e-59 231.1 217 59.4
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 1.3e-58 230.3 211 60.2
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 3.9e-58 228.8 212 59.0
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 5.1e-58 228.4 211 59.7
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 5.1e-58 228.4 212 59.9
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 8.7e-58 227.6 213 60.1
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 1.1e-57 227.3 231 55.4
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 2.5e-57 226.1 231 54.1
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 7.3e-57 224.6 224 55.4
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 1.6e-56 223.4 216 57.4
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 2.8e-56 222.6 209 59.3
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 4.8e-56 221.9 219 57.5
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 6.2e-56 221.5 213 58.2
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 4.0e-55 218.8 210 57.1
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 6.9e-55 218.0 234 52.6
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 1.2e-54 217.2 211 57.8
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 3.4e-54 215.7 208 58.2
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 9.9e-54 214.2 211 55.0
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 9.9e-54 214.2 204 56.4
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 1.7e-53 213.4 253 51.4
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 3.8e-53 212.2 212 53.8
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 3.8e-53 212.2 213 57.3
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 4.9e-53 211.8 210 57.6
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 6.4e-53 211.5 212 53.8
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 6.4e-53 211.5 212 53.8
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 8.4e-53 211.1 240 53.3
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 1.1e-52 210.7 212 53.8
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 5.4e-52 208.4 234 51.3
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 3.9e-50 202.2 207 54.1
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 5.6e-49 198.4 303 44.9
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 1.3e-48 197.2 210 54.8
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 1.6e-48 196.8 201 55.2
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 2.1e-48 196.4 210 53.3
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 4.0e-47 192.2 216 50.9
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 9.6e-41 171.0 210 47.1
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 3.7e-40 169.1 227 47.1
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 1.5e-38 163.7 114 68.4
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 2.0e-38 163.3 102 80.4
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 2.1e-35 153.3 207 46.4
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 7.4e-33 144.8 220 44.5
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 9.6e-33 144.4 148 55.4
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 1.1e-31 141.0 124 63.7
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 2.0e-30 136.7 136 57.4
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 2.2e-29 133.3 84 76.2
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 1.1e-28 131.0 136 57.4
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 6.7e-26 121.7 217 42.9
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 3.3e-25 119.4 75 73.3
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 2.4e-23 113.2 129 50.4
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 8.5e-21 104.8 147 42.2
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 5.7e-17 92.0 97 50.5
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 9.7e-17 91.3 55 83.6
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 8.2e-16 88.2 78 50.0
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 5.3e-15 85.5 78 50.0
FAN27G2285 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.6e-14 83.2 103 47.6
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 8.5e-13 78.2 46 78.3
Haze_17648 Corylus avellana HOM05D006959 ORTHO05D008808 8.8e-10 68.2 85 51.8
Os02g0644100 Oryza sativa ssp. japonica HOM05D002462 ORTHO05D002893 7.4e-09 65.1 104 32.7
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 7.4e-09 65.1 154 30.5
Zm00001eb248730 Zea mays HOM05D002462 ORTHO05D002893 1.7e-08 63.9 104 31.7
VMungo1383G2940 Vigna mungo HOM05D003946 ORTHO05D004485 4.8e-08 62.4 130 29.2
Carub.0006s2688 Capsella rubella HOM05D005920 ORTHO05D007211 6.3e-08 62.0 133 29.3
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 6.3e-08 62.0 131 30.5
Phvul.008G125199 Phaseolus vulgaris HOM05D003946 ORTHO05D004485 6.3e-08 62.0 136 28.7
BcaC03g16447 Brassica carinata HOM05D005920 ORTHO05D007211 1.8e-07 60.5 139 30.9
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 2.4e-07 60.1 147 29.9
Ca_01517_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 4.1e-07 59.3 129 31.0
BcaB05g23941 Brassica carinata HOM05D005920 ORTHO05D007211 5.3e-07 58.9 133 29.3
C02p42670 Brassica napus HOM05D005920 ORTHO05D007211 5.3e-07 58.9 137 28.5
BolSC33t60638H Brassica oleracea HOM05D005920 ORTHO05D007211 5.3e-07 58.9 137 28.5
Ca_01529_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 5.3e-07 58.9 129 31.0
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 5.3e-07 58.9 113 30.1
arahy.Tifrunner.gnm1.ann1.5R3BA8 Arachis hypogaea HOM05D003946 ORTHO05D004485 7.0e-07 58.5 113 31.0
arahy.Tifrunner.gnm1.ann1.8RX8VY Arachis hypogaea HOM05D003946 ORTHO05D004485 7.0e-07 58.5 113 31.0
TPR.G35554 Trifolium pratense HOM05D003946 ORTHO05D004485 7.0e-07 58.5 129 31.0
AT4G08320 Arabidopsis thaliana HOM05D005920 ORTHO05D007211 9.1e-07 58.2 131 29.0
Cfa025863 Carpinus fangiana HOM05D002462 ORTHO05D002893 1.2e-06 57.8 110 25.5
Cre03.g189950 Chlamydomonas reinhardtii HOM05D002462 ORTHO05D002893 1.2e-06 57.8 125 29.6
A02p26870 Brassica napus HOM05D005920 ORTHO05D007211 1.5e-06 57.4 137 27.7
BraA02t07698Z Brassica rapa HOM05D005920 ORTHO05D007211 1.5e-06 57.4 137 27.7
Ciclev10001211m.g Citrus clementina HOM05D005920 ORTHO05D007211 1.5e-06 57.4 168 24.4
THA.LOC104817311 Tarenaya hassleriana HOM05D005920 ORTHO05D007211 1.5e-06 57.4 139 28.1
Medtr2g090135 Medicago truncatula HOM05D003946 ORTHO05D004485 2.0e-06 57.0 129 31.0
Nn2g14258 Nelumbo nucifera HOM05D003946 ORTHO05D004485 2.0e-06 57.0 153 28.8
Gohir.D04G087100 Gossypium hirsutum HOM05D003946 ORTHO05D004485 2.6e-06 56.6 157 29.3
Gorai.012G097100 Gossypium raimondii HOM05D003946 ORTHO05D004485 2.6e-06 56.6 157 29.3
Sp6g09620 Schrenkiella parvula HOM05D005920 ORTHO05D007211 2.6e-06 56.6 130 29.2
AL6G42090 Arabidopsis lyrata HOM05D005920 ORTHO05D007211 3.5e-06 56.2 125 28.8
Psat3g143400 Pisum sativum HOM05D003946 ORTHO05D004485 3.5e-06 56.2 129 31.8
arahy.Tifrunner.gnm1.ann1.69CB9U Arachis hypogaea HOM05D003946 ORTHO05D004485 4.5e-06 55.8 113 31.0
FAN21G2611 Fragaria x ananassa HOM05D003946 ORTHO05D004485 4.5e-06 55.8 157 27.4
Gohir.A05G234800 Gossypium hirsutum HOM05D005920 ORTHO05D007211 4.5e-06 55.8 116 27.6
Gohir.D05G237100 Gossypium hirsutum HOM05D005920 ORTHO05D007211 4.5e-06 55.8 116 27.6
Gorai.009G245500 Gossypium raimondii HOM05D005920 ORTHO05D007211 4.5e-06 55.8 116 27.6
Thecc.08G124700 Theobroma cacao HOM05D005920 ORTHO05D007211 4.5e-06 55.8 136 27.2
CARHR259410 Cardamine hirsuta HOM05D005920 ORTHO05D007211 5.9e-06 55.5 136 29.4
CBR_g52628 Chara braunii HOM05D006959 ORTHO05D008808 5.9e-06 55.5 73 42.5
PGR001G0003 Punica granatum HOM05D003946 ORTHO05D004485 5.9e-06 55.5 126 31.7
PGR044G0462 Punica granatum HOM05D003946 ORTHO05D004485 5.9e-06 55.5 126 31.7
Hund14611 Selenicereus undatus HOM05D002462 ORTHO05D002893 5.9e-06 55.5 111 27.9
CsaV3_2G007790 Cucumis sativus L. HOM05D003946 ORTHO05D004485 7.7e-06 55.1 163 27.0
Psat5g270480 Pisum sativum HOM05D003946 ORTHO05D004485 7.7e-06 55.1 129 31.0
Sabra05G0133900 Salix brachista HOM05D005920 ORTHO05D007211 7.7e-06 55.1 166 24.7


User provided reference genes

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