Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 5.1e-230 800.8 432 100.0
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 7.7e-210 733.8 427 91.8
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 2.5e-205 718.8 432 86.3
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 1.7e-204 716.1 434 89.9
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 2.8e-204 715.3 434 90.8
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 5.3e-203 711.1 432 85.2
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 5.3e-203 711.1 432 85.2
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 2.0e-202 709.1 432 85.4
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 7.7e-202 707.2 434 83.9
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 2.2e-201 705.7 432 84.5
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 6.5e-201 704.1 439 87.0
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 1.1e-200 703.4 432 81.9
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 3.2e-200 701.8 432 83.6
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 7.2e-200 700.7 432 83.3
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 9.4e-200 700.3 432 81.2
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 2.1e-199 699.1 432 87.7
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 2.3e-198 695.7 435 86.7
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 3.9e-198 694.9 455 83.7
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 3.9e-198 694.9 432 83.6
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 2.6e-197 692.2 434 83.2
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 2.6e-197 692.2 442 85.1
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 9.7e-197 690.3 432 82.2
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 1.7e-196 689.5 430 80.0
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 2.8e-196 688.7 430 87.7
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 3.7e-196 688.3 431 85.4
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 4.8e-196 688.0 432 87.0
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 1.1e-195 686.8 430 81.4
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.1e-195 686.8 432 80.6
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 1.4e-195 686.4 430 81.9
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 4.1e-195 684.9 430 79.5
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 7.0e-195 684.1 446 78.5
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 1.5e-194 682.9 432 86.6
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 4.5e-194 681.4 429 80.4
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 4.5e-194 681.4 435 84.4
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 5.9e-194 681.0 432 79.6
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 6.5e-193 677.6 430 86.5
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 3.2e-192 675.2 433 80.6
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 5.5e-192 674.5 422 88.6
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 2.1e-191 672.5 430 80.2
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 3.6e-191 671.8 432 79.2
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 3.6e-191 671.8 432 79.2
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 4.7e-191 671.4 432 79.6
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 4.7e-191 671.4 437 79.6
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 1.4e-190 669.8 432 78.9
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 1.4e-190 669.8 432 81.0
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 8.8e-190 667.2 434 79.5
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 1.5e-189 666.4 428 81.8
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 9.7e-189 663.7 432 78.2
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 6.3e-188 661.0 432 81.7
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.8e-187 659.4 430 78.1
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 5.3e-187 657.9 424 81.4
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 7.0e-187 657.5 437 78.5
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 9.1e-187 657.1 433 80.8
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 9.1e-187 657.1 437 80.1
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 3.5e-186 655.2 380 86.3
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 4.5e-186 654.8 437 78.0
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 5.9e-186 654.4 395 87.8
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 5.9e-186 654.4 432 85.2
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 1.0e-185 653.7 412 81.8
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 1.3e-185 653.3 435 79.3
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 1.7e-185 652.9 427 78.7
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 2.2e-185 652.5 435 79.1
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.9e-185 652.1 432 84.7
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 3.8e-185 651.7 370 89.7
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 6.5e-185 651.0 421 82.2
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 6.5e-185 651.0 430 84.9
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 6.5e-185 651.0 430 84.9
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 2.5e-184 649.0 433 79.7
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 3.2e-184 648.7 420 79.0
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 5.5e-184 647.9 437 79.2
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 1.2e-183 646.7 434 79.7
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 3.6e-183 645.2 432 84.3
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 4.7e-183 644.8 435 77.5
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 4.7e-183 644.8 434 82.0
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 3.0e-182 642.1 432 81.0
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 5.2e-182 641.3 431 81.2
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 5.2e-182 641.3 432 80.1
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 6.7e-182 641.0 413 83.3
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 6.7e-182 641.0 432 80.3
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 8.8e-182 640.6 432 81.2
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 1.5e-181 639.8 434 79.0
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 2.6e-181 639.0 464 75.2
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 5.7e-181 637.9 432 77.3
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 4.8e-180 634.8 394 83.8
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 1.8e-179 632.9 424 83.0
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 3.1e-179 632.1 416 77.9
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 3.5e-178 628.6 432 79.2
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 5.9e-178 627.9 428 81.1
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 5.9e-178 627.9 427 78.9
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 7.7e-178 627.5 453 72.8
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 7.7e-178 627.5 427 81.0
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 3.8e-177 625.2 435 74.5
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 5.0e-177 624.8 397 83.4
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 1.5e-173 613.2 402 82.3
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 2.0e-173 612.8 320 92.8
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 5.4e-171 604.7 319 91.8
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 5.0e-169 598.2 432 77.3
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 6.6e-169 597.8 441 76.6
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 6.6e-169 597.8 441 76.6
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 3.3e-168 595.5 430 72.1
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 4.4e-165 585.1 432 70.6
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 5.7e-165 584.7 315 89.2
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 5.7e-165 584.7 363 80.7
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 3.1e-163 578.9 400 78.8
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 7.0e-163 577.8 449 67.0
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 3.9e-161 572.0 410 70.2
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 2.5e-160 569.3 424 70.5
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 1.6e-159 566.6 360 76.4
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 1.6e-159 566.6 397 73.8
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 3.6e-159 565.5 385 80.5
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 2.4e-155 552.7 360 75.3
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 7.0e-155 551.2 385 70.6
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 2.7e-154 549.3 396 68.7
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 3.7e-148 528.9 283 91.2
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 2.3e-142 509.6 370 72.4
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 3.1e-142 509.2 429 62.7
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 3.4e-141 505.8 435 61.6
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 4.4e-141 505.4 371 75.2
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.6e-138 496.9 433 63.0
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 4.6e-138 495.4 382 67.3
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 7.8e-138 494.6 431 60.3
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 1.3e-137 493.8 431 61.0
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 3.0e-137 492.7 431 61.5
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 1.5e-136 490.3 434 59.2
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 9.5e-136 487.6 429 59.9
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 9.5e-136 487.6 429 59.9
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 9.5e-136 487.6 429 59.9
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 9.5e-136 487.6 353 78.2
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 8.9e-134 481.1 319 74.3
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 1.5e-133 480.3 458 64.6
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 4.4e-133 478.8 319 74.0
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 4.9e-124 448.7 335 70.7
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 8.7e-121 438.0 319 73.7
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 3.8e-116 422.5 327 61.8
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 3.8e-116 422.5 312 67.6
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 3.2e-115 419.5 282 73.4
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 4.2e-115 419.1 322 63.0
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 1.2e-109 401.0 352 63.9
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 5.8e-109 398.7 224 88.4
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 3.2e-107 392.9 323 67.5
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 1.2e-85 321.2 224 77.2
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.5e-77 294.3 234 67.5
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 4.4e-72 276.2 184 75.5
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 7.7e-69 265.4 249 57.8
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 5.4e-62 242.7 299 49.2
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 7.7e-61 238.8 270 48.9
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 2.8e-55 220.3 122 82.0
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 8.6e-52 208.8 180 60.0
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 1.6e-50 204.5 311 39.2
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 6.8e-49 199.1 180 57.8
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 6.3e-47 192.6 148 69.6
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 5.4e-46 189.5 170 58.2
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 1.6e-45 188.0 101 86.1
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 8.6e-44 182.2 104 84.6
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 1.5e-43 181.4 101 83.2
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 4.3e-43 179.9 100 87.0
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 1.0e-41 175.3 176 52.8
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 5.8e-40 169.5 176 52.8
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 7.5e-40 169.1 100 80.0
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 4.1e-38 163.3 169 60.9
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 8.6e-36 155.6 77 90.9
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 7.3e-35 152.5 135 63.0
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 9.5e-35 152.1 122 66.4
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 1.2e-34 151.8 212 39.6
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.1e-33 148.7 76 88.2
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 6.6e-28 129.4 72 88.9
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 3.4e-24 117.1 74 78.4
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 1.3e-20 105.1 106 55.7
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 1.5e-16 91.7 179 37.4
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 4.9e-15 86.7 49 87.8
SEGI_40510 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 1.1e-11 75.5 53 66.0
Sp6g37550 Schrenkiella parvula HOM05D003910 ORTHO05D004622 7.3e-11 72.8 72 48.6
Nn3g17591 Nelumbo nucifera HOM05D003910 ORTHO05D004622 4.0e-09 67.0 36 88.9
Psat1g078960 Pisum sativum HOM05D003910 ORTHO05D004622 2.0e-08 64.7 77 53.2
Psat1g079000 Pisum sativum HOM05D003910 ORTHO05D004622 2.0e-08 64.7 77 53.2
Lsat_1_v5_gn_8_143861 Lactuca sativa HOM05D003910 ORTHO05D004622 3.4e-08 63.9 45 71.1


User provided reference genes

Program Settings