Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 2.4e-116 422.2 209 100.0
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 1.2e-72 276.9 211 68.7
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.4e-71 273.5 215 67.4
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 1.8e-71 273.1 214 70.1
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 2.3e-71 272.7 218 69.7
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 7.0e-68 261.2 218 66.1
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 8.0e-64 247.7 219 63.5
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 8.0e-64 247.7 221 65.6
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 2.3e-63 246.1 212 63.7
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 1.3e-61 240.4 220 62.7
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 6.4e-61 238.0 232 58.2
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 8.3e-61 237.7 208 61.1
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 3.2e-60 235.7 216 60.2
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 6.0e-59 231.5 216 58.8
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 7.8e-59 231.1 214 59.8
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 1.3e-58 230.3 214 61.2
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 3.0e-58 229.2 209 58.9
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 8.6e-58 227.6 221 63.8
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 8.6e-58 227.6 221 63.8
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 1.1e-57 227.3 217 58.5
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.9e-57 226.5 216 58.8
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 2.5e-57 226.1 221 57.9
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 3.3e-57 225.7 232 58.2
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 5.6e-57 224.9 224 59.8
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.8e-56 222.6 224 58.9
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 2.8e-56 222.6 225 55.6
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.7e-56 221.9 221 62.0
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 4.0e-55 218.8 219 58.9
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 4.0e-55 218.8 217 56.7
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 8.9e-55 217.6 211 58.8
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 8.9e-55 217.6 183 64.5
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 1.2e-54 217.2 211 59.2
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 2.0e-54 216.5 207 61.4
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 2.6e-54 216.1 211 58.8
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 3.4e-54 215.7 211 58.8
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.2e-53 213.0 224 56.7
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 2.9e-53 212.6 218 57.3
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 6.4e-53 211.5 215 56.3
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.4e-53 211.5 224 56.2
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 6.4e-53 211.5 195 57.9
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 8.3e-53 211.1 207 57.0
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.1e-52 210.7 207 59.4
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.4e-52 210.3 207 59.4
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.4e-52 210.3 224 58.5
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 5.4e-52 208.4 228 52.2
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 7.1e-52 208.0 207 58.9
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 9.2e-52 207.6 215 55.8
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 9.2e-52 207.6 224 57.6
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 9.2e-52 207.6 224 58.0
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 2.7e-51 206.1 207 58.9
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 6.0e-51 204.9 212 54.2
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 7.8e-51 204.5 212 54.2
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 1.3e-50 203.8 219 54.8
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 1.7e-50 203.4 211 55.9
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 3.0e-50 202.6 215 59.1
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 1.5e-49 200.3 234 54.3
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 3.3e-49 199.1 229 52.8
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.2e-48 197.2 222 52.7
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 1.2e-46 190.7 204 51.0
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 5.8e-46 188.3 213 53.1
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 2.9e-45 186.0 217 52.1
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 4.9e-45 185.3 227 49.3
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 8.4e-45 184.5 224 50.9
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.1e-44 184.1 213 50.7
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 1.9e-44 183.3 205 51.2
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 2.4e-44 183.0 214 55.6
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.2e-44 182.6 218 53.2
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 4.2e-44 182.2 220 49.5
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 5.4e-44 181.8 231 51.1
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 7.1e-44 181.4 215 52.6
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 7.1e-44 181.4 215 52.6
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 3.5e-43 179.1 213 50.7
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 4.6e-43 178.7 215 51.6
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 4.6e-43 178.7 220 54.5
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 6.0e-43 178.3 255 46.3
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 6.0e-43 178.3 196 54.6
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 1.3e-42 177.2 214 50.0
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 3.0e-42 176.0 217 50.7
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 3.9e-42 175.6 199 50.3
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 3.9e-42 175.6 217 53.5
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 6.6e-42 174.9 194 51.0
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 8.7e-42 174.5 217 49.8
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.9e-41 173.3 215 51.6
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.9e-41 173.3 214 52.3
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 7.3e-41 171.4 198 51.5
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 9.6e-41 171.0 219 48.4
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.3e-40 170.6 214 48.6
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 2.8e-40 169.5 160 63.1
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 8.1e-40 167.9 212 51.9
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.1e-39 167.5 222 50.0
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 1.8e-39 166.8 212 49.5
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 1.8e-39 166.8 212 49.5
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 1.8e-39 166.8 212 49.5
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 3.1e-39 166.0 212 48.6
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 5.3e-39 165.2 212 49.5
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 5.3e-39 165.2 212 49.5
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 9.0e-39 164.5 198 51.5
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 1.5e-38 163.7 228 47.4
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.0e-38 163.3 188 51.1
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 2.0e-38 163.3 212 50.0
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 4.4e-38 162.2 221 48.4
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 5.8e-38 161.8 221 48.0
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 9.9e-38 161.0 226 46.9
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 9.9e-38 161.0 206 48.5
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.7e-37 160.2 237 46.8
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 2.2e-37 159.8 237 45.1
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 2.9e-37 159.5 203 53.2
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 3.8e-37 159.1 224 46.0
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 8.4e-37 157.9 218 48.2
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 8.4e-37 157.9 218 48.2
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 8.4e-37 157.9 218 48.2
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 1.1e-36 157.5 199 48.2
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 2.4e-36 156.4 203 49.8
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 2.4e-36 156.4 218 47.7
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 3.2e-36 156.0 209 49.3
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 5.4e-36 155.2 205 50.2
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 5.4e-36 155.2 217 48.4
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 5.4e-36 155.2 217 48.4
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 2.7e-35 152.9 217 47.9
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 2.7e-35 152.9 217 47.9
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 2.7e-35 152.9 217 47.9
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 7.8e-35 151.4 213 47.9
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 5.1e-34 148.7 221 47.1
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.9e-33 146.7 176 50.6
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.5e-33 146.4 176 50.0
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 2.5e-33 146.4 254 43.3
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 9.6e-33 144.4 261 42.1
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.3e-32 144.1 198 45.5
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 4.8e-32 142.1 194 45.4
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 2.4e-31 139.8 173 50.3
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 5.3e-31 138.7 213 41.3
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 1.5e-30 137.1 178 47.2
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 2.6e-30 136.3 185 43.8
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 3.4e-30 136.0 178 44.4
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.4e-28 130.6 207 43.5
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 1.2e-27 127.5 154 53.2
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 1.6e-27 127.1 126 61.9
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 1.1e-25 120.9 100 63.0
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 5.6e-25 118.6 185 41.1
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 7.4e-25 118.2 217 36.9
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 1.3e-24 117.5 206 38.8
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 1.3e-24 117.5 231 38.5
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.3e-24 117.5 202 38.6
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 2.1e-24 116.7 186 41.4
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 9.0e-23 111.3 205 37.6
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 1.5e-22 110.5 97 57.7
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.0e-22 110.2 177 40.1
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.0e-22 110.2 225 34.7
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 1.0e-21 107.8 203 36.5
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.3e-21 107.5 205 38.5
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 8.4e-21 104.8 115 55.7
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.4e-20 104.0 123 50.4
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 4.2e-20 102.4 202 38.1
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 1.3e-18 97.4 130 51.5
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 2.3e-18 96.7 91 59.3
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.1e-17 94.4 165 40.0
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 7.4e-17 91.7 177 40.1
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.3e-16 90.9 94 51.1
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 2.1e-16 90.1 170 37.6
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 2.1e-16 90.1 170 37.6
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 2.8e-16 89.7 170 37.6
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 2.8e-16 89.7 170 37.6
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 3.7e-16 89.4 170 37.1
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 6.2e-16 88.6 215 33.0
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 1.1e-15 87.8 92 50.0
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.4e-15 86.7 156 37.8
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 3.4e-14 82.8 183 36.6
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 1.7e-13 80.5 249 30.9
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 8.4e-13 78.2 123 39.8
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 1.3e-10 70.9 180 33.9
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 1.3e-08 64.3 181 32.6
Ah.05g171110 Amaranthus hybridus HOM05D004006 ORTHO05D004585 3.4e-06 56.2 69 43.5
Nn5g27936 Nelumbo nucifera HOM05D004006 ORTHO05D004585 3.4e-06 56.2 118 36.4


User provided reference genes

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