Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 2.6e-225 785.4 499 100.0
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 2.8e-155 552.7 448 74.3
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 3.4e-145 519.2 470 69.4
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 7.6e-137 491.5 450 65.3
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 5.7e-132 475.3 475 64.0
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 2.2e-131 473.4 538 58.9
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 5.9e-129 465.3 448 66.1
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 7.2e-127 458.4 456 65.6
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 2.3e-125 453.4 494 58.7
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 2.3e-125 453.4 522 60.2
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 9.7e-124 448.0 451 63.2
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 2.0e-121 440.3 451 65.0
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 2.6e-121 439.9 451 62.3
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 1.0e-120 438.0 494 59.7
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 2.9e-120 436.4 450 59.8
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 9.4e-119 431.4 448 64.1
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 1.6e-118 430.6 456 63.2
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 1.6e-118 430.6 425 65.2
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 5.7e-116 422.2 451 61.6
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 3.7e-115 419.5 425 63.5
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 4.8e-115 419.1 427 62.3
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 1.4e-114 417.5 451 60.1
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 2.4e-114 416.8 432 60.4
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 9.1e-114 414.8 434 63.6
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 1.2e-113 414.5 431 62.2
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 1.7e-112 410.6 447 56.8
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 6.5e-112 408.7 457 57.3
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 5.5e-111 405.6 428 59.6
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 8.0e-110 401.7 447 55.9
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 8.8e-109 398.3 470 58.3
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.1e-108 397.9 468 59.0
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 3.3e-108 396.4 466 58.8
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 2.2e-107 393.7 436 58.3
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 9.1e-106 388.3 440 58.4
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 2.6e-105 386.7 452 56.9
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 2.6e-105 386.7 444 58.3
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 1.0e-104 384.8 468 58.1
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 3.8e-104 382.9 466 57.9
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 9.4e-103 378.3 451 56.5
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 1.6e-102 377.5 431 58.7
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 2.7e-102 376.7 452 57.1
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 4.7e-102 375.9 452 52.7
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 6.1e-102 375.6 442 53.8
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.0e-101 374.8 442 53.8
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 1.5e-100 370.9 436 58.0
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 3.7e-99 366.3 452 52.2
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 4.8e-99 365.9 384 63.5
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 8.3e-99 365.2 445 55.7
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.7e-97 360.1 456 57.7
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 7.7e-97 358.6 457 50.5
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.3e-96 357.8 446 52.9
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 2.2e-96 357.1 432 56.5
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.9e-96 356.7 450 57.1
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 2.9e-96 356.7 473 53.5
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 4.2e-95 352.8 436 55.7
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 9.4e-95 351.7 432 53.7
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 1.8e-93 347.4 450 54.4
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 3.0e-93 346.7 436 52.8
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 5.7e-92 342.4 387 57.1
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 1.7e-91 340.9 450 55.3
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 6.3e-91 339.0 452 53.1
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 2.7e-89 333.6 428 54.9
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 3.5e-89 333.2 435 50.3
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 1.0e-88 331.6 581 46.0
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 5.0e-88 329.3 432 51.9
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 8.6e-88 328.6 431 52.9
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 1.1e-87 328.2 350 62.3
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 1.1e-87 328.2 393 50.4
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 3.3e-87 326.6 436 50.2
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 4.7e-86 322.8 389 54.5
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 6.1e-86 322.4 436 50.7
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 8.0e-86 322.0 430 49.5
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 4.0e-85 319.7 443 49.4
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 8.9e-85 318.5 402 51.2
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 2.6e-84 317.0 438 48.6
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 2.0e-81 307.4 436 51.6
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 5.9e-81 305.8 425 47.5
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 1.1e-79 301.6 430 50.0
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 1.5e-79 301.2 423 47.8
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 1.9e-79 300.8 452 47.8
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 1.6e-78 297.7 438 47.9
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 2.1e-78 297.4 426 49.8
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 6.2e-78 295.8 432 50.9
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 8.0e-78 295.4 437 46.7
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 8.0e-78 295.4 392 48.2
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 3.1e-77 293.5 438 47.7
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 8.9e-77 292.0 442 45.7
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 1.5e-76 291.2 436 49.5
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 2.6e-76 290.4 416 49.3
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 3.4e-76 290.0 264 67.4
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 7.5e-76 288.9 434 46.5
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 9.8e-76 288.5 434 45.4
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 8.3e-75 285.4 428 50.2
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.4e-74 283.9 442 47.7
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 3.2e-74 283.5 435 46.7
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 2.7e-73 280.4 408 49.5
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 7.8e-73 278.9 437 44.4
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 5.0e-72 276.2 435 44.8
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 3.6e-70 270.0 417 45.8
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 1.3e-67 261.5 465 43.4
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.7e-67 261.2 366 50.3
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 3.2e-66 256.9 411 46.0
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 3.2e-66 256.9 318 60.1
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 3.2e-66 256.9 428 42.5
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 9.2e-66 255.4 424 43.9
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 4.6e-65 253.1 449 40.8
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 7.8e-65 252.3 325 51.1
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 1.7e-64 251.1 441 42.4
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 5.6e-63 246.1 437 42.8
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 1.2e-62 245.0 436 42.4
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 8.7e-48 195.7 176 61.9
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 4.3e-47 193.4 358 43.3
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 3.9e-40 170.2 310 42.9
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 4.0e-37 160.2 266 44.0
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 6.4e-35 152.9 193 49.7
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 2.4e-34 151.0 137 65.0
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 6.7e-32 142.9 454 31.3
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 7.4e-31 139.4 487 30.2
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 4.8e-30 136.7 277 39.4
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 1.0e-27 129.0 158 53.2
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.0e-27 129.0 428 29.7
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.9e-27 127.5 98 69.4
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 6.5e-27 126.3 453 32.2
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 1.9e-26 124.8 281 38.4
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 4.8e-22 110.2 406 29.6
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 8.5e-19 99.4 334 32.3
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 1.9e-18 98.2 417 29.0
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 7.2e-18 96.3 108 49.1
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 2.7e-17 94.4 77 66.2
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.8e-16 91.7 101 50.5
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 3.9e-16 90.5 63 71.4
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 1.5e-15 88.6 129 46.5
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 5.9e-12 76.6 63 60.3
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 5.0e-11 73.6 63 57.1
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 5.5e-10 70.1 57 57.9
SEGI_25872 Sequoiadendron giganteum HOM05D005355 ORTHO05D006591 7.9e-09 66.2 365 31.0
arahy.Tifrunner.gnm1.ann1.F65TCR Arachis hypogaea HOM05D005355 ORTHO05D006591 2.6e-07 61.2 38 68.4


User provided reference genes

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