Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G074850 Manihot esculenta HOM05D006768 ORTHO05D008436 2.6e-52 208.4 101 100.0
Manes.02G160800 Manihot esculenta HOM05D006768 ORTHO05D008436 1.9e-50 202.2 101 96.0
Potri.005G174700 Populus trichocarpa HOM05D006768 ORTHO05D008436 6.2e-46 187.2 101 89.1
Potri.002G086600 Populus trichocarpa HOM05D006768 ORTHO05D008436 2.4e-45 185.3 101 88.1
Duzib116G0009 Durio zibethinus HOM05D006768 ORTHO05D008436 4.0e-45 184.5 101 89.1
MELO3C011580.2 Cucumis melo HOM05D006768 ORTHO05D008436 6.9e-45 183.7 102 88.2
ClCG08G005390 Citrullus lanatus HOM05D006768 ORTHO05D008436 9.0e-45 183.3 102 88.2
Cpa.g.sc36.24 Carica papaya HOM05D006768 ORTHO05D008436 1.5e-44 182.6 103 86.4
Gohir.D02G081200 Gossypium hirsutum HOM05D006768 ORTHO05D008436 2.6e-44 181.8 102 87.3
Solyc11g013100.2 Solanum lycopersicum HOM05D006768 ORTHO05D008436 3.4e-44 181.4 102 86.3
Sopen11g008160 Solanum pennellii HOM05D006768 ORTHO05D008436 3.4e-44 181.4 102 86.3
COL.COLO4_38328 Corchorus olitorius HOM05D006768 ORTHO05D008436 4.5e-44 181.0 103 87.4
Thecc.08G120600 Theobroma cacao HOM05D006768 ORTHO05D008436 5.8e-44 180.6 102 86.3
Gohir.D05G235400 Gossypium hirsutum HOM05D006768 ORTHO05D008436 1.0e-43 179.9 102 85.3
Nitab4.5_0010364g0020 Nicotiana tabacum HOM05D006768 ORTHO05D008436 1.0e-43 179.9 102 87.3
Gohir.A05G233000 Gossypium hirsutum HOM05D006768 ORTHO05D008436 2.9e-43 178.3 102 85.3
CAN.G342.8 Capsicum annuum HOM05D006768 ORTHO05D008436 8.4e-43 176.8 101 86.1
Duzib041G0323 Durio zibethinus HOM05D006768 ORTHO05D008436 8.4e-43 176.8 102 85.3
Sed0001868 Sechium edule HOM05D006768 ORTHO05D008436 8.4e-43 176.8 102 86.3
Hma1.2p1_0009F.1_g006320 Hydrangea macrophylla HOM05D006768 ORTHO05D008436 1.1e-42 176.4 104 85.6
CAN.G2.37 Capsicum annuum HOM05D006768 ORTHO05D008436 1.6e-41 172.6 101 84.2
CsaV3_6G003570 Cucumis sativus L. HOM05D006768 ORTHO05D008436 2.1e-41 172.2 96 88.5
Gorai.005G090800 Gossypium raimondii HOM05D006768 ORTHO05D008436 1.0e-40 169.9 102 83.3
PGSC0003DMG400014092 Solanum tuberosum HOM05D006768 ORTHO05D008436 1.0e-40 169.9 101 82.2
Sabra02G0068000 Salix brachista HOM05D006768 ORTHO05D008436 1.3e-40 169.5 95 86.3
Aqoxy6G00156 Aquilegia oxysepala HOM05D006768 ORTHO05D008436 6.7e-40 167.2 101 81.2
Gohir.A02G074000 Gossypium hirsutum HOM05D006768 ORTHO05D008436 6.7e-40 167.2 102 82.4
Nitab4.5_0005357g0030 Nicotiana tabacum HOM05D006768 ORTHO05D008436 8.7e-40 166.8 96 85.4
MSTRG.25394 Avicennia marina HOM05D006768 ORTHO05D008436 2.5e-39 165.2 102 83.3
CiPaw.06G026900 Carya illinoinensis HOM05D006768 ORTHO05D008436 2.5e-39 165.2 107 79.4
vmacro00812 Vaccinium macrocarpon HOM05D006768 ORTHO05D008436 4.3e-39 164.5 103 83.5
Gorai.009G243700 Gossypium raimondii HOM05D006768 ORTHO05D008436 5.7e-39 164.1 97 81.4
PGR044G1209 Punica granatum HOM05D006768 ORTHO05D008436 7.4e-39 163.7 102 81.4
CSS0001196 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 1.3e-38 162.9 103 82.5
CSS0006116 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 1.3e-38 162.9 102 81.4
Ciclev10002911m.g Citrus clementina HOM05D006768 ORTHO05D008436 2.1e-38 162.2 107 77.6
SalBow7G0914 Salvia bowleyana HOM05D006768 ORTHO05D008436 2.1e-38 162.2 95 82.1
SalBow7G4665 Salvia bowleyana HOM05D006768 ORTHO05D008436 2.1e-38 162.2 95 82.1
TWI56G0584 Tripterygium wilfordii HOM05D006768 ORTHO05D008436 6.3e-38 160.6 104 78.8
EL10Ac1g00013 Beta vulgaris HOM05D006768 ORTHO05D008436 5.3e-37 157.5 106 75.5
HanXRQChr08g0223691 Helianthus annuus HOM05D006768 ORTHO05D008436 6.9e-37 157.1 101 79.2
Cc10_g11060 Coffea canephora HOM05D006768 ORTHO05D008436 1.2e-36 156.4 96 81.2
Migut.C01157 Erythranthe guttata HOM05D006768 ORTHO05D008436 1.2e-36 156.4 103 79.6
TAR625G0411 Trochodendron aralioides HOM05D006768 ORTHO05D008436 1.5e-36 156.0 101 78.2
Lsat_1_v5_gn_4_25061 Lactuca sativa HOM05D006768 ORTHO05D008436 5.9e-36 154.1 100 76.0
Sabra05G0131800 Salix brachista HOM05D006768 ORTHO05D008436 1.7e-35 152.5 84 85.7
Dinv27347 Davidia involucrata HOM05D006768 ORTHO05D008436 2.2e-35 152.1 94 80.9
GSVIVG01008909001 Vitis vinifera HOM05D006768 ORTHO05D008436 2.2e-35 152.1 110 73.6
TAR376G1039 Trochodendron aralioides HOM05D000018 ORTHO05D001920 2.9e-35 151.8 91 83.5
arahy.Tifrunner.gnm1.ann1.BFT67J Arachis hypogaea HOM05D006768 ORTHO05D008436 5.0e-35 151.0 112 72.3
arahy.Tifrunner.gnm1.ann1.V4QE5E Arachis hypogaea HOM05D006768 ORTHO05D008436 5.0e-35 151.0 112 72.3
FvH4_2g26460 Fragaria vesca HOM05D006768 ORTHO05D008436 5.0e-35 151.0 102 78.4
RcHm_v2.0_Chr6g0295131 Rosa chinensis HOM05D006768 ORTHO05D008436 5.0e-35 151.0 102 78.4
FAN24G3387 Fragaria x ananassa HOM05D006768 ORTHO05D008436 2.5e-34 148.7 102 77.5
Hma1.2p1_0073F.1_g038410 Hydrangea macrophylla HOM05D006768 ORTHO05D008436 3.2e-34 148.3 101 75.2
MD08G1168400 Malus domestica HOM05D006768 ORTHO05D008436 4.2e-34 147.9 99 77.8
Prupe.1G502600 Prunus persica HOM05D006768 ORTHO05D008436 5.5e-34 147.5 102 77.5
RhsimUnG0095400 Rhododendron simsii HOM05D006768 ORTHO05D008436 9.3e-34 146.7 95 80.0
Haze_00489 Corylus avellana HOM05D006768 ORTHO05D008436 1.2e-33 146.4 84 89.3
Atru.chr13.1393 Acer truncatum HOM05D006768 ORTHO05D008436 3.5e-33 144.8 105 75.2
ECA234G1078 Erigeron canadensis HOM05D006768 ORTHO05D008436 3.5e-33 144.8 105 71.4
unitig_21.g20584 Utricularia gibba HOM05D006768 ORTHO05D008436 6.1e-33 144.1 101 70.3
ECA233G5727 Erigeron canadensis HOM05D006768 ORTHO05D008436 1.0e-32 143.3 100 73.0
FAN15G1404 Fragaria x ananassa HOM05D006768 ORTHO05D008436 3.9e-32 141.4 97 77.3
Psat2g079320 Pisum sativum HOM05D006768 ORTHO05D008436 3.9e-32 141.4 107 73.8
AUR62004718 Chenopodium quinoa HOM05D006768 ORTHO05D008436 6.7e-32 140.6 107 70.1
TWI12G0503 Tripterygium wilfordii HOM05D006768 ORTHO05D008436 6.7e-32 140.6 105 71.4
TPR.G8510 Trifolium pratense HOM05D006768 ORTHO05D008436 1.9e-31 139.0 109 68.8
HanXRQChr16g0527071 Helianthus annuus HOM05D006768 ORTHO05D008436 3.3e-31 138.3 100 70.0
QL09p036660 Quercus lobata HOM05D006768 ORTHO05D008436 5.7e-31 137.5 106 68.9
CANSAT25G0473 Cannabis sativa HOM05D006768 ORTHO05D008436 1.3e-30 136.3 114 66.7
Eucgr.F04346 Eucalyptus grandis HOM05D006768 ORTHO05D008436 1.3e-30 136.3 86 80.2
Lalb_Chr04g0253331 Lupinus albus HOM05D006768 ORTHO05D008436 1.3e-30 136.3 113 67.3
MBI06_g02573_MAGBIO Magnolia biondii HOM05D006768 ORTHO05D008436 1.3e-30 136.3 94 74.5
Hund27041 Selenicereus undatus HOM05D006768 ORTHO05D008436 1.4e-29 132.9 109 66.1
Glyma.14G163200 Glycine max HOM05D006768 ORTHO05D008436 2.4e-29 132.1 111 68.5
Lj1g0025240 Lotus japonicus HOM05D006768 ORTHO05D008436 3.1e-29 131.7 116 64.7
Glyma.13G082200 Glycine max HOM05D006768 ORTHO05D008436 4.1e-29 131.3 111 66.7
Medtr5g059100 Medicago truncatula HOM05D006768 ORTHO05D008436 4.1e-29 131.3 108 71.3
Phvul.008G165800 Phaseolus vulgaris HOM05D006768 ORTHO05D008436 4.1e-29 131.3 114 66.7
SGA_v2.0_scaffold24G10479 Striga asiatica HOM05D006768 ORTHO05D008436 4.1e-29 131.3 100 65.0
BcaB01g02871 Brassica carinata HOM05D006768 ORTHO05D008436 1.5e-28 129.4 105 66.7
PSO170G4432 Papaver somniferum HOM05D006768 ORTHO05D008436 1.5e-28 129.4 103 68.9
PSO528G0064 Papaver somniferum HOM05D006768 ORTHO05D008436 1.5e-28 129.4 103 68.9
THA.LOC104817125 Tarenaya hassleriana HOM05D006768 ORTHO05D008436 2.6e-28 128.6 109 67.0
Thhalv10029535m.g Eutrema salsugineum HOM05D006768 ORTHO05D008436 3.4e-28 128.3 107 64.5
Sc23g0000800 Simmondsia chinensis HOM05D006768 ORTHO05D008436 1.3e-27 126.3 89 75.3
BcaC01g04777 Brassica carinata HOM05D006768 ORTHO05D008436 1.1e-26 123.2 113 62.8
BolC3t15699H Brassica oleracea HOM05D006768 ORTHO05D008436 1.1e-26 123.2 113 62.8
BraA03t12013Z Brassica rapa HOM05D006768 ORTHO05D008436 1.4e-26 122.9 114 62.3
CDE04G1345 Ceratophyllum demersum HOM05D006768 ORTHO05D008436 2.5e-26 122.1 101 58.4
Os03g0263700 Oryza sativa ssp. japonica HOM05D006768 ORTHO05D008436 3.2e-26 121.7 109 62.4
Sp6g09840 Schrenkiella parvula HOM05D006768 ORTHO05D008436 3.2e-26 121.7 115 61.7
Zm00001eb398080 Zea mays HOM05D006768 ORTHO05D008436 3.2e-26 121.7 113 56.6
CARHR259330 Cardamine hirsuta HOM05D006768 ORTHO05D008436 4.2e-26 121.3 111 59.5
HPP92_011177 Vanilla planifolia HOM05D006768 ORTHO05D008436 4.2e-26 121.3 102 64.7
VMungo0647G1658 Vigna mungo HOM05D006768 ORTHO05D008436 2.7e-25 118.6 107 62.6
CDE08G1444 Ceratophyllum demersum HOM05D006768 ORTHO05D008436 7.9e-25 117.1 105 59.0
FAN20G0213 Fragaria x ananassa HOM05D000048 ORTHO05D004674 3.0e-24 115.2 89 70.8
A03p28000 Brassica napus HOM05D006768 ORTHO05D008436 5.1e-24 114.4 107 61.7
C03p33820 Brassica napus HOM05D006768 ORTHO05D008436 5.1e-24 114.4 107 61.7
CSS0018251 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 5.1e-24 114.4 86 73.3
Zm00001eb011610 Zea mays HOM05D006768 ORTHO05D008436 5.1e-24 114.4 112 56.2
Carub.0006s2676 Capsella rubella HOM05D006768 ORTHO05D008436 8.8e-24 113.6 115 57.4
AT4G08230 Arabidopsis thaliana HOM05D006768 ORTHO05D008436 2.0e-23 112.5 114 56.1
THA.LOC104806813 Tarenaya hassleriana HOM05D006768 ORTHO05D008436 2.2e-22 109.0 109 56.9
AL6G41870 Arabidopsis lyrata HOM05D006768 ORTHO05D008436 2.8e-22 108.6 113 57.5
Peaxi162Scf00000g61010 Petunia axillaris HOM05D006768 ORTHO05D008436 2.8e-22 108.6 64 85.9
Nitab4.5_0001142g0120 Nicotiana tabacum HOM05D006768 ORTHO05D008436 6.9e-21 104.0 94 60.6
FAN27G1871 Fragaria x ananassa HOM05D000048 ORTHO05D004674 1.3e-19 99.8 78 71.8
SEGI_37020 Sequoiadendron giganteum HOM05D006768 ORTHO05D008436 1.7e-19 99.4 102 53.9
Sabra05G0131600 Salix brachista HOM05D006768 ORTHO05D008436 2.5e-18 95.5 56 83.9
Ca_28007_v3 Cicer arietinum L. HOM05D006768 ORTHO05D008436 2.8e-14 82.0 82 61.0
Aa31LG9G14330 Aethionema arabicum HOM05D006768 ORTHO05D008436 2.4e-13 79.0 86 54.7
AUR62023633 Chenopodium quinoa HOM05D006768 ORTHO05D008436 2.4e-13 79.0 69 65.2
Mapoly0043s0020 Marchantia polymorpha HOM05D006768 ORTHO05D008436 2.9e-11 72.0 117 41.0
Pp3c13_12030 Physcomitrium patens HOM05D006768 ORTHO05D008436 3.8e-11 71.6 102 43.1
AagrBONN_evm.TU.Sc2ySwM_344.1603 Anthoceros agrestis HOM05D006768 ORTHO05D008436 4.7e-09 64.7 102 40.2
Nn1g08704 Nelumbo nucifera HOM05D006768 ORTHO05D008436 1.0e-08 63.5 50 68.0


User provided reference genes

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