Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1964.1 994 100.0
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1686.0 1006 85.1
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1602.4 1007 80.9
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1599.7 1005 80.7
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1571.6 1003 79.4
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1567.7 1012 79.3
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1565.8 1007 78.5
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1564.7 1008 79.3
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1555.8 1009 77.8
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1555.0 1021 78.5
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1553.1 1004 79.3
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1537.7 1007 76.5
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1530.8 1010 77.2
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1523.1 1002 76.8
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1521.9 1007 76.2
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1515.0 1032 74.5
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1512.3 1013 75.6
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1508.8 1011 76.7
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1505.0 1004 76.3
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1503.0 1032 74.0
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1500.7 1011 75.1
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1498.4 1009 75.6
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1496.5 964 79.1
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1495.3 1043 73.2
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1494.9 1025 74.1
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1494.2 1005 75.9
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1494.2 1016 75.7
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1491.1 1001 76.0
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1487.6 1013 74.7
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1485.3 1013 74.6
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1485.3 1013 74.6
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1476.5 1017 74.0
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1475.3 1017 74.8
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1474.1 996 74.6
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1473.0 1007 75.6
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1468.8 1002 75.0
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1467.2 1003 74.7
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1464.9 1007 74.8
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1462.2 1005 73.2
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1458.7 1013 74.4
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1455.3 1008 73.6
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1452.2 1001 72.9
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1451.0 1000 73.3
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1450.6 996 73.5
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1446.8 997 73.2
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1442.6 1007 73.5
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1441.8 1038 71.1
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1438.3 1007 73.3
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1431.0 1053 70.0
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1429.8 1007 72.4
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1428.7 1006 72.7
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1427.5 1005 73.2
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1426.8 1035 71.0
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1425.2 1006 71.9
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1425.2 979 74.2
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1425.2 1011 72.6
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1424.1 1007 73.0
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1423.7 1008 72.1
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1422.1 1004 71.8
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1421.8 1004 71.8
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1421.8 1004 71.7
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1421.8 1028 71.1
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1421.0 995 72.7
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1420.6 925 78.7
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1420.6 1006 72.3
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1420.6 1007 72.1
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1419.1 1005 72.2
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1418.3 1003 72.3
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1416.7 1013 71.5
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1416.7 1004 71.5
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1411.7 1013 72.8
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1408.3 967 74.6
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1407.1 969 74.6
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1401.0 1002 71.1
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1395.6 1081 68.3
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1394.4 1027 71.2
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1392.9 998 71.5
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1379.4 996 71.6
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1359.0 1015 68.3
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1359.0 999 68.9
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1344.7 1014 69.0
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1343.2 976 71.3
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1342.8 1012 68.6
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1337.4 998 69.4
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1335.5 1108 64.8
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1335.1 1020 67.9
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1330.5 1013 68.5
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1318.9 1000 68.4
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1316.2 1016 67.1
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1315.8 1000 68.7
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1305.8 992 68.2
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1303.1 1001 68.3
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1302.0 1043 66.3
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1297.3 1010 67.4
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1289.6 1027 65.6
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1288.9 1010 67.2
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1288.5 1023 66.5
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1283.9 993 67.9
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1283.9 955 69.6
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1281.2 976 67.5
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1268.4 940 69.0
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1244.2 1030 63.7
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1241.9 1003 64.9
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1236.1 857 75.1
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1231.5 1139 58.5
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1231.1 915 70.3
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1225.3 1035 63.4
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1224.2 1005 65.1
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1220.3 998 65.1
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1213.4 1171 56.5
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1208.0 1009 64.4
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1208.0 989 63.1
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1191.8 1007 61.8
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1178.3 1013 62.7
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1169.5 1008 59.7
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1154.0 976 64.9
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1135.6 893 66.6
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1132.1 927 62.5
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1125.5 811 72.1
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1114.8 858 68.6
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 6.5e-305 1050.8 931 60.4
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 3.1e-283 978.8 1029 52.1
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 4.2e-280 968.4 869 60.2
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 7.8e-274 947.6 777 66.0
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 2.1e-271 939.5 1044 50.2
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 9.5e-256 887.5 624 74.0
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 4.0e-254 882.1 619 74.6
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 5.2e-254 881.7 967 49.8
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 5.3e-238 828.6 1017 46.4
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 7.6e-237 824.7 1008 46.4
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 3.8e-236 822.4 640 68.3
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 2.1e-231 806.6 615 67.0
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.3e-220 770.8 864 46.5
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 1.2e-218 764.2 1228 40.6
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 1.4e-195 687.6 389 90.2
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 6.1e-186 655.6 391 83.1
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 1.5e-179 634.4 360 85.8
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 1.2e-154 551.6 435 68.0
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 1.4e-150 538.1 469 63.8
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 9.2e-150 535.4 566 51.9
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 5.4e-142 509.6 529 54.8
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 6.4e-111 406.4 238 85.7
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 6.9e-105 386.3 280 70.7
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 2.2e-103 381.3 252 76.6
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 1.8e-100 371.7 205 82.9
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 8.4e-95 352.8 239 74.9
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 9.7e-83 312.8 839 29.4
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 2.4e-81 308.1 215 73.5
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 1.4e-76 292.4 162 85.2
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 2.9e-71 274.6 150 84.7
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 6.1e-61 240.4 173 67.1
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 2.2e-58 231.9 238 58.0
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 1.8e-52 212.2 147 76.9
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 3.4e-51 208.0 225 54.2
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 1.2e-48 199.5 484 31.2
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 5.9e-48 197.2 114 80.7
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 3.2e-41 174.9 150 58.0
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.7e-40 171.8 90 82.2
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 3.1e-36 158.3 215 45.6
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 1.4e-33 149.4 109 69.7
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 6.0e-32 144.1 129 58.9
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.2e-29 136.3 113 59.3
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 8.1e-29 133.7 77 77.9
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 1.5e-27 129.4 120 59.2
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 6.0e-24 117.5 96 60.4
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 3.0e-23 115.2 81 69.1
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 4.1e-17 94.7 79 59.5
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 4.1e-17 94.7 79 59.5
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 4.1e-17 94.7 79 59.5
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 2.1e-16 92.4 81 59.3
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 1.3e-15 89.7 65 58.5
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.5e-11 76.3 46 78.3
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 2.6e-11 75.5 50 70.0
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 9.3e-09 67.0 65 52.3
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 1.2e-08 66.6 79 49.4
BcaB07g32539 Brassica carinata HOM05D001026 ORTHO05D092453 2.7e-08 65.5 71 56.3


User provided reference genes

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