Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G061000 Manihot esculenta HOM05D006274 ORTHO05D007782 1.3e-97 359.8 184 100.0
TWI56G1401 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 1.3e-73 280.0 192 76.0
QL09p017221 Quercus lobata HOM05D006274 ORTHO05D007782 4.1e-72 275.0 195 77.9
SalBow6G3082 Salvia bowleyana HOM05D006274 ORTHO05D007782 1.2e-71 273.5 182 76.9
Thecc.08G068200 Theobroma cacao HOM05D006274 ORTHO05D007782 1.2e-71 273.5 185 76.8
Potri.002G103700 Populus trichocarpa HOM05D006274 ORTHO05D007782 2.1e-71 272.7 194 74.2
CiPaw.07G167900 Carya illinoinensis HOM05D006274 ORTHO05D007782 6.0e-71 271.2 193 74.1
Haze_22342 Corylus avellana HOM05D006274 ORTHO05D007782 1.7e-70 269.6 180 76.1
PGR031G0701 Punica granatum HOM05D006274 ORTHO05D007782 1.7e-70 269.6 179 77.1
Cfa013698 Carpinus fangiana HOM05D006274 ORTHO05D007782 3.0e-70 268.9 180 76.1
MSTRG.19530 Avicennia marina HOM05D006274 ORTHO05D007782 8.6e-70 267.3 183 73.2
Duzib116G0317 Durio zibethinus HOM05D006274 ORTHO05D007782 1.5e-69 266.5 193 74.1
Sed0009042 Sechium edule HOM05D006274 ORTHO05D007782 7.3e-69 264.2 187 74.9
Cc10_g15630 Coffea canephora HOM05D006274 ORTHO05D007782 6.2e-68 261.2 182 74.2
Migut.J00587 Erythranthe guttata HOM05D006274 ORTHO05D007782 1.4e-67 260.0 181 74.0
Ciclev10002605m.g Citrus clementina HOM05D006274 ORTHO05D007782 1.8e-67 259.6 190 74.2
TAR381G0542 Trochodendron aralioides HOM05D006274 ORTHO05D007782 1.8e-67 259.6 191 71.7
Aa31LG9G13640 Aethionema arabicum HOM05D006274 ORTHO05D007782 3.1e-67 258.8 188 74.5
Oeu024592.1 Olea europaea HOM05D006274 ORTHO05D007782 1.5e-66 256.5 180 72.2
C04p15430 Brassica napus HOM05D006274 ORTHO05D007782 2.6e-66 255.8 175 73.7
CsaV3_2G030110 Cucumis sativus L. HOM05D006274 ORTHO05D007782 4.4e-66 255.0 187 72.2
BcaB02g10587 Brassica carinata HOM05D006274 ORTHO05D007782 5.8e-66 254.6 188 70.7
SGA_v2.0_scaffold10G05208 Striga asiatica HOM05D006274 ORTHO05D007782 5.8e-66 254.6 182 72.0
Glyma.06G094500 Glycine max HOM05D006274 ORTHO05D007782 9.9e-66 253.8 184 72.3
BolC4t23114H Brassica oleracea HOM05D006274 ORTHO05D007782 1.3e-65 253.4 176 74.4
Hund27007 Selenicereus undatus HOM05D006274 ORTHO05D007782 1.3e-65 253.4 185 72.4
Nn5g29933 Nelumbo nucifera HOM05D006274 ORTHO05D007782 2.9e-65 252.3 194 68.6
Thhalv10017289m.g Eutrema salsugineum HOM05D006274 ORTHO05D007782 3.8e-65 251.9 175 75.4
BcaC02g11449 Brassica carinata HOM05D006274 ORTHO05D007782 4.9e-65 251.5 176 73.9
BraA05t20127Z Brassica rapa HOM05D006274 ORTHO05D007782 4.9e-65 251.5 175 73.1
CSS0028463 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 4.9e-65 251.5 186 69.9
CSS0045542 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 4.9e-65 251.5 186 69.9
Carub.0004s1538 Capsella rubella HOM05D006274 ORTHO05D007782 6.4e-65 251.1 184 72.8
A05p11860 Brassica napus HOM05D006274 ORTHO05D007782 8.4e-65 250.8 176 73.3
AL4G29430 Arabidopsis lyrata HOM05D006274 ORTHO05D007782 2.4e-64 249.2 185 70.8
AT2G33740 Arabidopsis thaliana HOM05D006274 ORTHO05D007782 5.4e-64 248.1 187 71.1
ClCG08G011520 Citrullus lanatus HOM05D006274 ORTHO05D007782 7.1e-64 247.7 211 64.9
Sc01g0001050 Simmondsia chinensis HOM05D006274 ORTHO05D007782 7.1e-64 247.7 191 68.6
Gohir.D06G032400 Gossypium hirsutum HOM05D006274 ORTHO05D007782 2.7e-63 245.7 185 70.3
MD08G1193500 Malus domestica HOM05D006274 ORTHO05D007782 2.7e-63 245.7 193 67.4
PGSC0003DMG400012912 Solanum tuberosum HOM05D006274 ORTHO05D007782 4.6e-63 245.0 178 70.8
THA.LOC104814210 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 4.6e-63 245.0 194 66.0
MBI02_g18284_MAGBIO Magnolia biondii HOM05D006274 ORTHO05D007782 1.0e-62 243.8 192 68.2
Dinv44839 Davidia involucrata HOM05D006274 ORTHO05D007782 1.3e-62 243.4 189 69.3
Gorai.010G035700 Gossypium raimondii HOM05D006274 ORTHO05D007782 1.3e-62 243.4 185 69.7
Actinidia19642 Actinidia chinensis HOM05D006274 ORTHO05D007782 1.7e-62 243.0 183 69.4
Solyc04g076050.4 Solanum lycopersicum HOM05D006274 ORTHO05D007782 1.7e-62 243.0 175 70.9
Glyma.04G092700 Glycine max HOM05D006274 ORTHO05D007782 3.0e-62 242.3 184 68.5
Hma1.2p1_0010F.1_g006970 Hydrangea macrophylla HOM05D006274 ORTHO05D007782 3.0e-62 242.3 183 69.4
EL10Ac1g01111 Beta vulgaris HOM05D006274 ORTHO05D007782 3.9e-62 241.9 178 72.5
CARHR127760 Cardamine hirsuta HOM05D006274 ORTHO05D007782 5.1e-62 241.5 187 70.1
MD15G1382000 Malus domestica HOM05D006274 ORTHO05D007782 5.1e-62 241.5 191 66.5
Sopen00g007030 Solanum pennellii HOM05D006274 ORTHO05D007782 1.5e-61 240.0 176 69.9
Sopen00g007710 Solanum pennellii HOM05D006274 ORTHO05D007782 1.5e-61 240.0 176 69.9
Gorai.009G231100 Gossypium raimondii HOM05D006274 ORTHO05D007782 1.9e-61 239.6 187 70.6
Gohir.A05G218200 Gossypium hirsutum HOM05D006274 ORTHO05D007782 3.3e-61 238.8 188 69.7
Sp4g16090 Schrenkiella parvula HOM05D006274 ORTHO05D007782 1.3e-60 236.9 175 72.0
Dinv42635 Davidia involucrata HOM05D006274 ORTHO05D007782 1.6e-60 236.5 182 70.9
Eucgr.F02129 Eucalyptus grandis HOM05D006274 ORTHO05D007782 6.2e-60 234.6 201 63.7
VMungo1309G0647 Vigna mungo HOM05D006274 ORTHO05D007782 6.2e-60 234.6 194 66.0
Lalb_Chr08g0242401 Lupinus albus HOM05D006274 ORTHO05D007782 1.1e-59 233.8 182 67.6
Nitab4.5_0010618g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 1.1e-59 233.8 178 69.7
Sabra02G0081200 Salix brachista HOM05D006274 ORTHO05D007782 1.1e-59 233.8 232 58.2
FvH4_5g35790 Fragaria vesca HOM05D006274 ORTHO05D007782 1.8e-59 233.0 182 68.7
GSVIVG01009140001 Vitis vinifera HOM05D006274 ORTHO05D007782 1.8e-59 233.0 161 74.5
Prupe.1G528000 Prunus persica HOM05D006274 ORTHO05D007782 3.1e-59 232.3 179 67.6
CDE10G0432 Ceratophyllum demersum HOM05D006274 ORTHO05D007782 4.0e-59 231.9 168 69.6
MELO3C011069.2 Cucumis melo HOM05D006274 ORTHO05D007782 4.0e-59 231.9 205 63.9
RcHm_v2.0_Chr7g0237451 Rosa chinensis HOM05D006274 ORTHO05D007782 4.0e-59 231.9 184 65.8
vmacro04670 Vaccinium macrocarpon HOM05D006274 ORTHO05D007782 4.0e-59 231.9 193 64.8
THA.LOC104820685 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 5.3e-59 231.5 185 68.6
Phvul.009G143300 Phaseolus vulgaris HOM05D006274 ORTHO05D007782 9.0e-59 230.7 195 65.1
ECA232G3909 Erigeron canadensis HOM05D006274 ORTHO05D007782 1.5e-58 229.9 179 68.7
FAN04G0860 Fragaria x ananassa HOM05D006274 ORTHO05D007782 2.6e-58 229.2 182 68.1
FAN18G0017 Fragaria x ananassa HOM05D006274 ORTHO05D007782 5.8e-58 228.0 182 67.0
Lsat_1_v5_gn_9_74940 Lactuca sativa HOM05D006274 ORTHO05D007782 5.8e-58 228.0 176 69.3
unitig_26.g9169 Utricularia gibba HOM05D006274 ORTHO05D007782 9.9e-58 227.3 172 68.6
Ca_22436_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 2.2e-57 226.1 187 66.8
Lj1g0015671 Lotus japonicus HOM05D006274 ORTHO05D007782 2.9e-57 225.7 188 64.4
TPR.G26025 Trifolium pratense HOM05D006274 ORTHO05D007782 2.9e-57 225.7 182 65.9
Medtr3g100630 Medicago truncatula HOM05D006274 ORTHO05D007782 3.8e-57 225.3 187 64.7
Gohir.A06G032628 Gossypium hirsutum HOM05D006274 ORTHO05D007782 4.2e-56 221.9 168 71.4
HanXRQChr09g0249401 Helianthus annuus HOM05D006274 ORTHO05D007782 6.0e-55 218.0 175 67.4
Hund16871 Selenicereus undatus HOM05D006274 ORTHO05D007782 3.9e-54 215.3 179 66.5
Gohir.D05G223833 Gossypium hirsutum HOM05D006274 ORTHO05D007782 8.7e-54 214.2 187 66.3
Cpa.g.sc309.7 Carica papaya HOM05D006274 ORTHO05D007782 3.3e-53 212.2 189 63.0
PSO210G3104 Papaver somniferum HOM05D006274 ORTHO05D007782 1.6e-52 209.9 180 63.3
TWI12G0161 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 2.1e-52 209.5 122 82.8
Peaxi162Scf00281g00415 Petunia axillaris HOM05D006274 ORTHO05D007782 2.8e-52 209.1 172 66.3
ATR0022G028 Amborella trichopoda HOM05D006274 ORTHO05D007782 6.2e-52 208.0 182 61.5
Aqoxy5G01327 Aquilegia oxysepala HOM05D006274 ORTHO05D007782 1.1e-51 207.2 184 61.4
PSO170G6492 Papaver somniferum HOM05D006274 ORTHO05D007782 3.4e-50 202.2 175 62.9
Zm00001eb006540 Zea mays HOM05D006274 ORTHO05D007782 3.4e-50 202.2 163 63.8
Nitab4.5_0001507g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 9.9e-50 200.7 177 61.6
Nn1g05513 Nelumbo nucifera HOM05D006274 ORTHO05D007782 2.9e-49 199.1 175 63.4
Ca_15989_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 4.9e-49 198.4 156 67.3
AUR62019013 Chenopodium quinoa HOM05D006274 ORTHO05D007782 5.4e-48 194.9 113 82.3
DCAR_012863 Daucus carota HOM05D006274 ORTHO05D007782 7.1e-48 194.5 113 81.4
MSTRG.6044 Avicennia marina HOM05D006274 ORTHO05D007782 1.2e-47 193.7 113 82.3
AUR62027854 Chenopodium quinoa HOM05D006274 ORTHO05D007782 1.6e-47 193.4 113 80.5
Os03g0186950 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 2.1e-47 193.0 166 63.3
Sopen00g004300 Solanum pennellii HOM05D006274 ORTHO05D007782 5.1e-46 188.3 112 80.4
arahy.Tifrunner.gnm1.ann1.44X20L Arachis hypogaea HOM05D006274 ORTHO05D007782 6.7e-46 188.0 158 66.5
arahy.Tifrunner.gnm1.ann1.SMA5HD Arachis hypogaea HOM05D006274 ORTHO05D007782 6.7e-46 188.0 143 70.6
Actinidia29612 Actinidia chinensis HOM05D006274 ORTHO05D007782 1.9e-45 186.4 170 61.8
Os10g0378300 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 2.5e-45 186.0 112 79.5
CAN.G1658.2 Capsicum annuum HOM05D006274 ORTHO05D007782 2.8e-44 182.6 118 77.1
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 6.9e-43 177.9 145 63.4
Atru.chr13.1045 Acer truncatum HOM05D006274 ORTHO05D007782 1.3e-38 163.7 99 82.8
CANSAT64G0910 Cannabis sativa HOM05D006274 ORTHO05D007782 8.7e-38 161.0 136 64.0
FAN13G2708 Fragaria x ananassa HOM05D006274 ORTHO05D007782 2.1e-36 156.4 92 79.3
FAN08G3216 Fragaria x ananassa HOM05D006274 ORTHO05D007782 1.8e-35 153.3 92 78.3
Sed0010188 Sechium edule HOM05D006274 ORTHO05D007782 1.8e-35 153.3 92 80.4
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 4.5e-34 148.7 88 79.5
Mapoly0011s0077 Marchantia polymorpha HOM05D006274 ORTHO05D007782 9.3e-32 141.0 126 55.6
SMO119G0339 Selaginella moellendorffii HOM05D006274 ORTHO05D007782 9.3e-32 141.0 110 60.9
Psat5g045880 Pisum sativum HOM05D006274 ORTHO05D007782 1.8e-30 136.7 139 59.7
Rhsim07G0210300 Rhododendron simsii HOM05D006274 ORTHO05D007782 9.7e-29 131.0 70 87.1
SEGI_33866 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 1.6e-28 130.2 108 56.5
SEGI_16140 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 8.2e-28 127.9 90 68.9
CBR_g39263 Chara braunii HOM05D002374 ORTHO05D003594 5.3e-27 125.2 101 54.5
PRCOL_00002052 Prasinoderma coloniale HOM05D006274 ORTHO05D007782 1.5e-26 123.6 94 60.6
Cre02.g082350 Chlamydomonas reinhardtii HOM05D006274 ORTHO05D007782 2.0e-26 123.2 97 59.8
EL10Ac9g22466 Beta vulgaris HOM05D006274 ORTHO05D007782 5.9e-26 121.7 70 78.6
AagrBONN_evm.TU.Sc2ySwM_228.3755 Anthoceros agrestis HOM05D006274 ORTHO05D007782 3.0e-22 109.4 101 55.4
Pp3c21_2600 Physcomitrium patens HOM05D006274 ORTHO05D007782 4.3e-21 105.5 116 47.4
CBR_g7959 Chara braunii HOM05D006274 ORTHO05D007782 9.1e-19 97.8 92 53.3
Ca_28793_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 4.7e-07 58.9 85 31.8


User provided reference genes

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