Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 7.7e-47 190.3 105 100.0
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 1.4e-19 99.8 104 59.6
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 5.2e-19 97.8 101 58.4
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 1.5e-18 96.3 78 66.7
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 2.0e-18 95.9 92 60.9
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 2.0e-18 95.9 88 60.2
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 2.6e-18 95.5 84 63.1
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 9.8e-18 93.6 104 56.7
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 9.8e-18 93.6 104 56.7
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 9.8e-18 93.6 101 52.5
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 1.7e-17 92.8 103 56.3
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 2.2e-17 92.4 81 61.7
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 2.8e-17 92.0 74 64.9
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 3.7e-17 91.7 70 70.0
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 4.8e-17 91.3 71 69.0
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 4.8e-17 91.3 82 61.0
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 6.3e-17 90.9 69 69.6
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 8.3e-17 90.5 73 64.4
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 1.8e-16 89.4 85 60.0
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 2.4e-16 89.0 71 63.4
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 2.4e-16 89.0 72 62.5
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 3.1e-16 88.6 80 60.0
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 3.1e-16 88.6 66 68.2
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 4.1e-16 88.2 81 60.5
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 4.1e-16 88.2 78 62.8
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 4.1e-16 88.2 81 60.5
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 5.4e-16 87.8 78 62.8
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 7.0e-16 87.4 81 60.5
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 9.1e-16 87.0 81 60.5
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 9.1e-16 87.0 81 59.3
Oeu040885.1 Olea europaea HOM05D007802 ORTHO05D009879 1.2e-15 86.7 96 57.3
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 1.6e-15 86.3 75 62.7
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 1.6e-15 86.3 81 59.3
Gohir.A05G216600 Gossypium hirsutum HOM05D007802 ORTHO05D009879 1.6e-15 86.3 98 53.1
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 3.5e-15 85.1 84 58.3
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 3.5e-15 85.1 78 61.5
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 4.5e-15 84.7 78 59.0
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 4.5e-15 84.7 69 65.2
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 5.9e-15 84.3 68 66.2
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 5.9e-15 84.3 82 58.5
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 5.9e-15 84.3 82 58.5
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 1.0e-14 83.6 78 57.7
TWI56G1155 Tripterygium wilfordii HOM05D007802 ORTHO05D009879 1.0e-14 83.6 79 59.5
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 2.2e-14 82.4 69 63.8
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 2.9e-14 82.0 83 55.4
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 1.1e-13 80.1 82 56.1
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 1.5e-13 79.7 83 59.0
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 1.5e-13 79.7 100 52.0
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 1.9e-13 79.3 82 54.9
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 1.9e-13 79.3 98 49.0
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 4.2e-13 78.2 100 51.0
COL.COLO4_35287 Corchorus olitorius HOM05D007802 ORTHO05D009879 7.2e-13 77.4 104 47.1
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 7.2e-13 77.4 69 59.4
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 7.2e-13 77.4 81 54.3
Psat2g064360 Pisum sativum HOM05D007802 ORTHO05D009879 7.2e-13 77.4 84 53.6
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 1.2e-12 76.6 78 57.7
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 1.6e-12 76.3 69 59.4
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.6e-12 76.3 73 54.8
SalBow7G0598 Salvia bowleyana HOM05D007802 ORTHO05D009879 2.1e-12 75.9 71 56.3
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 3.6e-12 75.1 69 56.5
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 4.7e-12 74.7 65 60.0
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 8.0e-12 73.9 83 54.2
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 8.0e-12 73.9 109 44.0
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 8.0e-12 73.9 109 44.0
PGR042G2061 Punica granatum HOM05D007802 ORTHO05D009879 8.0e-12 73.9 95 49.5
Nitab4.5_0001601g0070 Nicotiana tabacum HOM05D007802 ORTHO05D009879 1.4e-11 73.2 68 55.9
Sed0007651 Sechium edule HOM05D007802 ORTHO05D009879 1.4e-11 73.2 98 50.0
arahy.Tifrunner.gnm1.ann1.J1FBU0 Arachis hypogaea HOM05D007802 ORTHO05D009879 3.0e-11 72.0 75 54.7
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 8.8e-11 70.5 72 55.6
ATR0767G120 Amborella trichopoda HOM05D007802 ORTHO05D009879 1.2e-10 70.1 73 54.8
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 1.5e-10 69.7 71 53.5
Nitab4.5_0003852g0060 Nicotiana tabacum HOM05D007802 ORTHO05D009879 2.0e-10 69.3 68 54.4
Aqoxy6G00664 Aquilegia oxysepala HOM05D007802 ORTHO05D009879 5.7e-10 67.8 107 40.2
Solyc08g016415.1 Solanum lycopersicum HOM05D007802 ORTHO05D009879 5.7e-10 67.8 69 52.2
Sopen08g006790 Solanum pennellii HOM05D007802 ORTHO05D009879 9.8e-10 67.0 69 52.2
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 2.2e-09 65.9 99 46.5
AUR62014370 Chenopodium quinoa HOM05D007802 ORTHO05D009879 2.8e-09 65.5 68 52.9
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 1.8e-08 62.8 93 46.2
Glyma.14G183300 Glycine max HOM05D007802 ORTHO05D009879 5.4e-08 61.2 45 66.7
DCAR_019323 Daucus carota HOM05D007802 ORTHO05D009879 7.0e-08 60.8 86 43.0
BcaC02g07465 Brassica carinata HOM05D007802 ORTHO05D009879 5.9e-07 57.8 63 54.0
Os06g0651200 Oryza sativa ssp. japonica HOM05D007802 ORTHO05D009879 5.9e-07 57.8 72 44.4
SEGI_04889 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 2.9e-06 55.5 66 47.0
SEGI_40405 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 6.6e-06 54.3 66 47.0
Zm00001eb388760 Zea mays HOM05D007802 ORTHO05D009879 8.6e-06 53.9 54 55.6


User provided reference genes

Program Settings