Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 6.7e-229 797.0 394 100.0
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 4.7e-190 667.9 395 85.6
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 5.0e-184 647.9 397 82.1
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 5.8e-180 634.4 395 80.0
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 7.0e-178 627.5 395 79.2
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 2.0e-177 625.9 397 79.8
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 2.7e-177 625.5 397 79.8
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 2.7e-177 625.5 396 79.0
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.6e-177 624.8 395 77.7
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 4.6e-177 624.8 395 77.7
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 1.0e-176 623.6 391 79.5
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 5.0e-176 621.3 387 80.9
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.3e-175 618.2 395 77.0
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 5.6e-175 617.8 411 76.9
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 5.6e-175 617.8 394 77.7
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 6.2e-174 614.4 394 77.2
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 1.8e-173 612.8 395 78.7
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.8e-173 612.8 398 79.1
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 4.0e-173 611.7 395 76.2
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 5.2e-173 611.3 422 74.9
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 1.5e-172 609.8 395 75.7
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 2.2e-171 605.9 389 78.1
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 2.2e-171 605.9 398 78.1
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 1.1e-170 603.6 395 75.2
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 1.4e-170 603.2 396 76.8
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 2.4e-170 602.4 412 75.2
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 2.4e-170 602.4 394 75.4
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 4.1e-170 601.7 386 77.2
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 5.4e-170 601.3 395 75.2
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 7.1e-170 600.9 395 75.4
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 9.2e-170 600.5 394 75.6
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 9.2e-170 600.5 412 76.0
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 2.1e-169 599.4 402 76.4
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 2.3e-168 595.9 396 77.3
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.5e-167 593.2 392 78.3
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 7.3e-167 590.9 396 74.7
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 1.2e-166 590.1 397 75.1
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 2.3e-165 585.9 396 74.5
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 3.4e-164 582.0 396 74.7
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 7.6e-164 580.9 422 69.9
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 7.6e-164 580.9 397 72.3
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 9.9e-164 580.5 396 74.7
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 9.9e-164 580.5 395 74.2
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 3.8e-163 578.6 390 74.6
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.4e-162 576.6 395 73.7
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 5.4e-162 574.7 440 68.4
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 1.3e-160 570.1 395 73.2
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 3.0e-160 568.9 395 72.2
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 8.6e-160 567.4 393 71.2
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 3.3e-159 565.5 397 73.6
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 7.3e-159 564.3 395 72.4
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 6.2e-158 561.2 397 70.3
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 8.1e-158 560.8 393 69.7
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.4e-157 560.1 423 68.8
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 1.8e-157 559.7 411 71.8
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 2.4e-157 559.3 393 69.5
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 5.2e-157 558.1 393 70.5
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 1.2e-156 557.0 401 73.1
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 2.0e-156 556.2 393 69.7
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 3.4e-156 555.4 397 70.0
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 1.3e-155 553.5 387 72.9
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 6.4e-155 551.2 397 71.0
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 1.1e-154 550.4 387 72.4
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 1.4e-154 550.1 396 70.7
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 1.4e-154 550.1 401 69.8
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 2.4e-154 549.3 390 69.2
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 5.4e-154 548.1 401 69.6
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 9.3e-154 547.4 356 76.7
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 1.6e-153 546.6 397 69.8
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 6.0e-153 544.7 397 68.3
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 7.8e-153 544.3 386 69.2
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 1.0e-152 543.9 397 68.8
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 6.6e-152 541.2 397 67.8
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 6.6e-152 541.2 398 68.3
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 2.1e-150 536.2 394 68.3
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 1.1e-149 533.9 398 68.6
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 5.3e-149 531.6 399 70.2
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 2.0e-148 529.6 399 68.9
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 3.4e-148 528.9 395 68.6
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 5.8e-148 528.1 395 68.9
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 7.6e-148 527.7 395 68.4
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 2.4e-146 522.7 390 70.3
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 5.4e-146 521.5 400 68.2
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.0e-144 517.3 395 67.8
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 3.0e-144 515.8 390 69.2
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 6.7e-144 514.6 401 66.6
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 3.7e-142 508.8 384 66.4
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 3.7e-142 508.8 393 64.6
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 4.8e-142 508.4 406 66.0
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 3.8e-139 498.8 396 64.4
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 2.7e-137 492.7 409 63.3
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 1.4e-133 480.3 391 63.4
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 9.0e-133 477.6 311 78.5
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.9e-130 469.9 430 58.8
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 9.3e-130 467.6 392 62.2
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 1.1e-127 460.7 393 59.3
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 5.7e-127 458.4 375 64.3
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.1e-125 454.1 389 62.5
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 3.1e-125 452.6 389 62.5
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.7e-123 446.8 390 60.3
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 9.3e-122 441.0 269 80.7
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 7.4e-119 431.4 393 58.3
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.3e-118 430.6 413 57.9
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 7.7e-116 421.4 387 59.7
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 1.7e-115 420.2 398 57.8
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 2.7e-113 412.9 396 58.1
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 3.1e-109 399.4 444 52.0
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 2.4e-101 373.2 307 62.9
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 9.1e-101 371.3 304 63.2
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 2.9e-99 366.3 395 50.6
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.6e-97 360.5 426 50.2
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 7.7e-92 341.7 391 48.1
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 5.2e-88 328.9 390 46.9
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 8.6e-83 311.6 294 56.5
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 7.2e-82 308.5 379 45.6
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 2.8e-81 306.6 417 42.7
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 1.8e-72 277.3 236 57.6
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 5.2e-72 275.8 428 43.0
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 2.4e-69 266.9 442 41.4
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 1.1e-58 231.5 249 51.0
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 2.3e-56 223.8 155 68.4
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 7.5e-55 218.8 155 75.5
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.6e-42 176.0 109 80.7
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.6e-41 174.5 109 79.8
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.8e-41 173.7 109 80.7
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.0e-39 167.5 109 78.0
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 4.9e-38 162.9 116 75.9
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 1.3e-33 148.3 86 82.6
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 2.4e-32 144.1 126 60.3
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 3.2e-29 133.7 96 77.1
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 1.0e-27 128.6 93 65.6
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 2.0e-23 114.4 124 52.4
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 3.4e-23 113.6 67 85.1
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 4.2e-21 106.7 79 62.0
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 1.1e-16 92.0 100 47.0
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 4.9e-14 83.2 55 69.1
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.4e-13 81.6 50 80.0
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 2.5e-13 80.9 81 58.0
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 1.6e-12 78.2 335 26.0
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 1.8e-11 74.7 67 56.7
Phvul.009G072333 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 5.7e-10 69.7 69 44.9


User provided reference genes

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