Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G048800 Manihot esculenta HOM05D007433 ORTHO05D009199 7.3e-59 230.3 114 100.0
Manes.05G183000 Manihot esculenta HOM05D007433 ORTHO05D009199 4.6e-45 184.5 112 78.6
Potri.014G013600 Populus trichocarpa HOM05D007433 ORTHO05D009199 4.1e-38 161.4 113 76.1
Potri.002G116200 Populus trichocarpa HOM05D007433 ORTHO05D009199 2.3e-36 155.6 112 72.3
Thecc.08G085300 Theobroma cacao HOM05D007433 ORTHO05D009199 2.3e-36 155.6 113 74.3
Hma1.2p1_1170F.1_g263410 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 1.2e-34 149.8 103 72.8
Cfa013749 Carpinus fangiana HOM05D007433 ORTHO05D009199 8.1e-34 147.1 111 69.4
Haze_06413 Corylus avellana HOM05D007433 ORTHO05D009199 1.8e-33 146.0 111 67.6
GSVIVG01009308001 Vitis vinifera HOM05D007433 ORTHO05D009199 5.2e-33 144.4 104 70.2
Dinv44935 Davidia involucrata HOM05D007433 ORTHO05D009199 1.5e-32 142.9 105 72.4
QL12p038428 Quercus lobata HOM05D007433 ORTHO05D009199 4.4e-32 141.4 107 70.1
vmacro04593 Vaccinium macrocarpon HOM05D007433 ORTHO05D009199 4.9e-31 137.9 101 69.3
Sabra02G0091500 Salix brachista HOM05D007433 ORTHO05D009199 1.4e-30 136.3 89 78.7
Rhsim07G0217700 Rhododendron simsii HOM05D007433 ORTHO05D009199 2.4e-30 135.6 108 70.4
CiPaw.07G172700 Carya illinoinensis HOM05D007433 ORTHO05D009199 4.1e-30 134.8 116 63.8
Atru.chr13.862 Acer truncatum HOM05D007433 ORTHO05D009199 9.2e-30 133.7 109 64.2
TAR376G0199 Trochodendron aralioides HOM05D007433 ORTHO05D009199 1.2e-29 133.3 104 66.3
Actinidia29630 Actinidia chinensis HOM05D001492 ORTHO05D001400 2.1e-29 132.5 103 67.0
COL.COLO4_28471 Corchorus olitorius HOM05D007433 ORTHO05D009199 2.1e-29 132.5 112 68.8
Actinidia19585 Actinidia chinensis HOM05D002375 ORTHO05D002457 3.5e-29 131.7 98 69.4
VMungo1309G0469 Vigna mungo HOM05D007433 ORTHO05D009199 7.8e-29 130.6 106 65.1
Cpa.g.sc142.56 Carica papaya HOM05D007433 ORTHO05D009199 1.3e-28 129.8 116 66.4
TPR.G33670 Trifolium pratense HOM05D007433 ORTHO05D009199 1.3e-28 129.8 112 62.5
TAR628G1336 Trochodendron aralioides HOM05D007433 ORTHO05D009199 1.3e-28 129.8 105 61.9
Dinv39208 Davidia involucrata HOM05D007433 ORTHO05D009199 2.3e-28 129.0 91 75.8
CiPaw.08G051700 Carya illinoinensis HOM05D007433 ORTHO05D009199 3.0e-28 128.6 107 63.6
Gohir.A02G080400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 3.9e-28 128.3 107 69.2
Gohir.D02G088300 Gossypium hirsutum HOM05D007433 ORTHO05D009199 3.9e-28 128.3 107 69.2
Gorai.005G098900 Gossypium raimondii HOM05D007433 ORTHO05D009199 3.9e-28 128.3 107 69.2
ClCG05G026590 Citrullus lanatus HOM05D007433 ORTHO05D009199 8.6e-28 127.1 106 67.0
MELO3C016834.2 Cucumis melo HOM05D007433 ORTHO05D009199 8.6e-28 127.1 106 67.0
Medtr3g103330 Medicago truncatula HOM05D007433 ORTHO05D009199 8.6e-28 127.1 104 64.4
Phvul.009G073600 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 8.6e-28 127.1 106 63.2
Sed0005155 Sechium edule HOM05D007433 ORTHO05D009199 8.6e-28 127.1 106 67.0
Glyma.06G048300 Glycine max HOM05D007433 ORTHO05D009199 4.3e-27 124.8 105 62.9
Lj1g0004253 Lotus japonicus HOM05D007433 ORTHO05D009199 9.6e-27 123.6 118 60.2
Gorai.010G026800 Gossypium raimondii HOM05D007433 ORTHO05D009199 2.8e-26 122.1 112 62.5
Gohir.D06G022200 Gossypium hirsutum HOM05D007433 ORTHO05D009199 3.6e-26 121.7 111 64.0
Gohir.A06G025100 Gossypium hirsutum HOM05D007433 ORTHO05D009199 8.1e-26 120.6 109 63.3
Psat5g037160 Pisum sativum HOM05D007433 ORTHO05D009199 8.1e-26 120.6 110 60.9
Prupe.1G419900 Prunus persica HOM05D007433 ORTHO05D009199 1.4e-25 119.8 106 60.4
CANSAT25G0221 Cannabis sativa HOM05D007433 ORTHO05D009199 3.1e-25 118.6 111 58.6
Peaxi162Scf00340g00061 Petunia axillaris HOM05D007433 ORTHO05D009199 3.1e-25 118.6 108 61.1
MD15G1066100 Malus domestica HOM05D007433 ORTHO05D009199 5.2e-25 117.9 103 58.3
Aqoxy6G02471 Aquilegia oxysepala HOM05D007433 ORTHO05D009199 6.9e-25 117.5 113 57.5
Glyma.04G047400 Glycine max HOM05D007433 ORTHO05D009199 6.9e-25 117.5 98 64.3
Nn5g30654 Nelumbo nucifera HOM05D007433 ORTHO05D009199 1.2e-24 116.7 101 61.4
Eucgr.F00094 Eucalyptus grandis HOM05D007433 ORTHO05D009199 1.5e-24 116.3 96 62.5
TAR381G0154 Trochodendron aralioides HOM05D007433 ORTHO05D009199 2.6e-24 115.5 107 60.7
Cc10_g07560 Coffea canephora HOM05D007433 ORTHO05D009199 3.4e-24 115.2 110 61.8
ECA247G0789 Erigeron canadensis HOM05D007433 ORTHO05D009199 1.7e-23 112.8 115 53.9
Gorai.009G221600 Gossypium raimondii HOM05D007433 ORTHO05D009199 1.7e-23 112.8 99 61.6
Gohir.D05G214900 Gossypium hirsutum HOM05D007433 ORTHO05D009199 3.8e-23 111.7 99 60.6
HanXRQChr10g0295351 Helianthus annuus HOM05D007433 ORTHO05D009199 4.9e-23 111.3 112 54.5
Gohir.A05G211600 Gossypium hirsutum HOM05D007433 ORTHO05D009199 6.4e-23 110.9 98 61.2
Lalb_Chr11g0062981 Lupinus albus HOM05D007433 ORTHO05D009199 8.4e-23 110.5 119 52.9
Nitab4.5_0013161g0010 Nicotiana tabacum HOM05D007433 ORTHO05D009199 8.4e-23 110.5 103 59.2
FvH4_2g32740 Fragaria vesca HOM05D007433 ORTHO05D009199 1.9e-22 109.4 111 55.9
FAN24G3110 Fragaria x ananassa HOM05D007433 ORTHO05D009199 1.9e-22 109.4 111 55.9
Lalb_Chr08g0245211 Lupinus albus HOM05D007433 ORTHO05D009199 2.4e-22 109.0 108 58.3
Solyc04g077570.1 Solanum lycopersicum HOM05D007433 ORTHO05D009199 3.2e-22 108.6 100 56.0
RcHm_v2.0_Chr6g0309931 Rosa chinensis HOM05D007433 ORTHO05D009199 5.4e-22 107.8 110 57.3
FAN15G2820 Fragaria x ananassa HOM05D007433 ORTHO05D009199 7.1e-22 107.5 111 55.9
Ciclev10002882m.g Citrus clementina HOM05D007433 ORTHO05D009199 9.3e-22 107.1 112 53.6
Sc02g0008080 Simmondsia chinensis HOM05D007433 ORTHO05D009199 9.3e-22 107.1 99 57.6
CAN.G1239.9 Capsicum annuum HOM05D007433 ORTHO05D009199 1.2e-21 106.7 105 53.3
FAN20G2053 Fragaria x ananassa HOM05D007433 ORTHO05D009199 1.2e-21 106.7 114 57.0
PGSC0003DMG400004914 Solanum tuberosum HOM05D007433 ORTHO05D009199 1.2e-21 106.7 111 53.2
FAN27G2289 Fragaria x ananassa HOM05D007433 ORTHO05D009199 2.7e-21 105.5 111 55.9
MBI16_g32085_MAGBIO Magnolia biondii HOM05D007433 ORTHO05D009199 7.8e-21 104.0 110 54.5
Lsat_1_v5_gn_1_480 Lactuca sativa HOM05D007433 ORTHO05D009199 6.6e-20 100.9 107 53.3
Sopen04g031210 Solanum pennellii HOM05D007433 ORTHO05D009199 6.6e-20 100.9 109 53.2
EL10Ac1g02355 Beta vulgaris HOM05D007433 ORTHO05D009199 5.6e-19 97.8 120 45.8
VMungo0647G2383 Vigna mungo HOM05D007433 ORTHO05D009199 7.3e-19 97.4 109 56.0
Glyma.17G233300 Glycine max HOM05D007433 ORTHO05D009199 9.6e-19 97.1 107 57.0
Ca_15891_v3 Cicer arietinum L. HOM05D007433 ORTHO05D009199 2.8e-18 95.5 109 55.0
CsaV3_4G035230 Cucumis sativus L. HOM05D007433 ORTHO05D009199 3.6e-18 95.1 71 67.6
Oeu014281.1 Olea europaea HOM05D007433 ORTHO05D009199 6.2e-18 94.4 92 60.9
Atru.chr13.863 Acer truncatum HOM05D007433 ORTHO05D009199 1.1e-17 93.6 81 61.7
AUR62035005 Chenopodium quinoa HOM05D007433 ORTHO05D009199 1.8e-17 92.8 107 52.3
Phvul.001G029300 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 4.0e-17 91.7 105 53.3
Nn6g34518 Nelumbo nucifera HOM05D007433 ORTHO05D009199 9.0e-17 90.5 113 51.3
SalBow7G1382 Salvia bowleyana HOM05D007433 ORTHO05D009199 3.2e-14 82.0 82 54.9
Migut.C00395 Erythranthe guttata HOM05D007433 ORTHO05D009199 2.1e-13 79.3 77 58.4
Phvul.011G135200 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 6.0e-13 77.8 75 57.3
DCAR_008860 Daucus carota HOM05D007433 ORTHO05D009199 1.8e-12 76.3 75 54.7
Hma1.2p1_3243F.1_g334320 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 5.6e-11 71.2 104 41.3
Potri.014G007000 Populus trichocarpa HOM05D007433 ORTHO05D009199 1.1e-09 67.0 66 51.5
Manes.13G109500 Manihot esculenta HOM05D007433 ORTHO05D009199 1.4e-09 66.6 65 55.4
SalBow3G4039 Salvia bowleyana HOM05D007433 ORTHO05D009199 9.0e-09 63.9 47 59.6
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 2.0e-08 62.8 49 63.3
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 3.4e-08 62.0 52 55.8
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 9.9e-08 60.5 58 53.4
Zm00001eb217410 Zea mays HOM05D007433 ORTHO05D009199 9.9e-08 60.5 92 42.4
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.3e-07 60.1 62 53.2
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 1.3e-07 60.1 51 54.9
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 1.3e-07 60.1 51 54.9
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 1.3e-07 60.1 51 54.9
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 1.3e-07 60.1 51 54.9
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 1.7e-07 59.7 55 58.2
COL.COLO4_11609 Corchorus olitorius HOM05D007433 ORTHO05D009199 1.7e-07 59.7 51 56.9
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 1.7e-07 59.7 53 58.5
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.7e-07 59.7 47 63.8
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 2.2e-07 59.3 50 56.0
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.2e-07 59.3 48 60.4
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 2.2e-07 59.3 48 62.5
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 2.9e-07 58.9 51 56.9
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 2.9e-07 58.9 59 52.5
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 3.8e-07 58.5 59 52.5
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 3.8e-07 58.5 47 59.6
ATR0797G001 Amborella trichopoda HOM05D007433 ORTHO05D003347 4.9e-07 58.2 73 42.5
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 4.9e-07 58.2 47 59.6
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 4.9e-07 58.2 74 44.6
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 6.4e-07 57.8 47 61.7
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 6.4e-07 57.8 48 60.4
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 6.4e-07 57.8 49 59.2
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 6.4e-07 57.8 50 58.0
Thecc.01G075800 Theobroma cacao HOM05D007433 ORTHO05D009199 6.4e-07 57.8 37 64.9
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 6.4e-07 57.8 49 57.1
Dinv26956 Davidia involucrata HOM05D000754 ORTHO05D000169 8.4e-07 57.4 101 39.6
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 8.4e-07 57.4 47 61.7
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 8.4e-07 57.4 49 59.2
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 8.4e-07 57.4 49 59.2
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.1e-06 57.0 47 59.6
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 1.1e-06 57.0 49 57.1
Zm00001eb029410 Zea mays HOM05D003086 ORTHO05D003347 1.1e-06 57.0 62 51.6
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 1.4e-06 56.6 54 55.6
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 1.4e-06 56.6 49 57.1
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 1.4e-06 56.6 50 58.0
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.9e-06 56.2 47 59.6
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 1.9e-06 56.2 52 53.8
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 1.9e-06 56.2 62 53.2
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 1.9e-06 56.2 52 57.7
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.4e-06 55.8 58 50.0
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 2.4e-06 55.8 47 55.3
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 2.4e-06 55.8 47 57.4
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.4e-06 55.8 47 57.4
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.4e-06 55.8 47 57.4
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.4e-06 55.8 47 57.4
Nitab4.5_0001072g0010 Nicotiana tabacum HOM05D016189 ORTHO05D009199 2.4e-06 55.8 56 48.2
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 2.4e-06 55.8 61 50.8
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 2.4e-06 55.8 41 58.5
Os10g0502100 Oryza sativa ssp. japonica HOM05D003086 ORTHO05D003347 3.2e-06 55.5 52 55.8
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 3.2e-06 55.5 73 45.2
Zm00001eb044240 Zea mays HOM05D028875 ORTHO05D003347 3.2e-06 55.5 49 55.1
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 4.2e-06 55.1 49 57.1
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 4.2e-06 55.1 47 57.4
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 4.2e-06 55.1 47 57.4
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 4.2e-06 55.1 51 54.9
Prupe.6G217400 Prunus persica HOM05D020383 ORTHO05D022607 4.2e-06 55.1 110 36.4
Zm00001eb268340 Zea mays HOM05D028875 ORTHO05D003347 4.2e-06 55.1 51 52.9
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 5.5e-06 54.7 60 53.3
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 5.5e-06 54.7 57 52.6
Cc02_g01250 Coffea canephora HOM05D003086 ORTHO05D003347 5.5e-06 54.7 51 56.9
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 5.5e-06 54.7 49 55.1
Nitab4.5_0000142g0360 Nicotiana tabacum HOM05D016189 ORTHO05D009199 5.5e-06 54.7 49 51.0
Zm00001eb051570 Zea mays HOM05D028875 ORTHO05D003347 5.5e-06 54.7 40 62.5
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 7.1e-06 54.3 69 44.9
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 7.1e-06 54.3 52 53.8
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.1e-06 54.3 46 58.7
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 7.1e-06 54.3 49 55.1
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 7.1e-06 54.3 49 57.1
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 9.3e-06 53.9 60 51.7
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 9.3e-06 53.9 69 44.9
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 9.3e-06 53.9 69 44.9
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 9.3e-06 53.9 54 51.9
Hma1.2p1_0424F.1_g150510 Hydrangea macrophylla HOM05D016189 ORTHO05D009199 9.3e-06 53.9 70 45.7
Nitab4.5_0002780g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 9.3e-06 53.9 50 56.0
Nitab4.5_0007100g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 9.3e-06 53.9 50 56.0
Peaxi162Scf00740g00215 Petunia axillaris HOM05D003086 ORTHO05D003347 9.3e-06 53.9 49 57.1
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 9.3e-06 53.9 59 49.2
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 9.3e-06 53.9 50 54.0
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 9.3e-06 53.9 50 54.0


User provided reference genes

Program Settings