Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 1.3e-243 845.9 419 100.0
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 4.1e-144 515.4 362 72.9
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 3.9e-142 508.8 359 71.3
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 2.8e-140 502.7 365 71.2
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 3.2e-136 489.2 362 71.8
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 7.8e-135 484.6 362 71.5
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 1.5e-130 470.3 349 68.8
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 3.8e-129 465.7 368 69.3
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 2.7e-127 459.5 365 66.8
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 3.3e-125 452.6 352 68.5
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 3.3e-125 452.6 385 64.7
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 2.9e-121 439.5 363 64.2
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 7.1e-120 434.9 381 63.0
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 6.0e-119 431.8 382 63.1
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 7.9e-119 431.4 378 62.7
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.0e-118 431.0 383 62.7
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 1.3e-118 430.6 378 63.8
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.5e-117 426.4 376 63.3
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.6e-116 423.7 383 62.7
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 2.8e-116 422.9 364 67.9
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 1.5e-114 417.2 360 61.9
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 4.5e-114 415.6 361 62.0
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.0e-113 414.5 360 63.9
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 1.7e-113 413.7 353 63.2
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 8.4e-113 411.4 363 65.6
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 1.0e-110 404.4 369 65.0
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 8.7e-110 401.4 380 61.1
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 7.4e-109 398.3 372 60.8
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 1.8e-107 393.7 379 60.9
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 2.4e-107 393.3 365 61.1
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 6.9e-107 391.7 360 59.4
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.0e-106 390.2 373 59.5
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.0e-106 390.2 373 59.5
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 2.9e-105 386.3 370 60.8
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 5.1e-102 375.6 380 60.0
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 6.7e-102 375.2 382 58.6
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 3.7e-100 369.4 383 58.2
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 1.1e-99 367.9 368 59.0
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 6.9e-99 365.2 438 50.2
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 7.7e-98 361.7 393 56.0
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 4.2e-96 355.9 365 57.8
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 5.5e-96 355.5 393 56.0
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 3.6e-95 352.8 336 60.4
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 3.9e-94 349.4 366 53.8
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 6.7e-94 348.6 360 55.8
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 5.7e-93 345.5 393 52.7
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 1.1e-91 341.3 384 53.6
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 6.9e-91 338.6 361 55.1
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 1.2e-90 337.8 366 56.6
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 1.0e-89 334.7 353 54.7
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 3.2e-88 329.7 382 53.1
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 5.2e-86 322.4 382 52.4
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 5.2e-86 322.4 369 51.2
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 6.7e-86 322.0 371 53.6
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 6.7e-86 322.0 360 53.9
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 1.1e-85 321.2 379 53.8
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 2.6e-85 320.1 372 52.2
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 2.6e-85 320.1 368 50.3
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 3.3e-85 319.7 371 51.8
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 4.4e-85 319.3 371 51.8
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 4.4e-85 319.3 444 47.3
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 5.7e-85 318.9 330 56.4
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 1.3e-84 317.8 371 51.8
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 2.8e-84 316.6 372 52.7
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 4.8e-84 315.8 372 51.9
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 4.8e-84 315.8 368 54.3
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 1.4e-83 314.3 362 54.7
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 5.3e-83 312.4 366 49.5
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 3.5e-82 309.7 367 48.5
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 1.3e-81 307.8 368 51.4
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 1.3e-81 307.8 386 49.2
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 1.7e-81 307.4 367 49.3
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 2.2e-81 307.0 387 50.9
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.8e-81 306.2 372 51.9
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.5e-80 304.3 385 49.6
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 7.2e-80 302.0 353 47.0
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 7.2e-80 302.0 370 49.7
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 9.4e-80 301.6 373 47.7
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 9.4e-80 301.6 375 49.9
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 1.6e-79 300.8 370 49.5
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 4.7e-79 299.3 372 49.7
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 3.0e-78 296.6 372 48.9
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 1.2e-77 294.7 367 48.8
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 3.3e-77 293.1 366 49.2
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 3.7e-76 289.7 438 47.9
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 4.8e-76 289.3 367 47.7
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 6.3e-76 288.9 368 48.9
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 3.1e-75 286.6 392 46.7
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 2.0e-74 283.9 357 52.4
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 2.7e-74 283.5 361 50.7
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 7.2e-72 275.4 426 47.2
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 1.5e-69 267.7 366 47.5
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 5.7e-69 265.8 333 49.2
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 1.7e-68 264.2 378 46.8
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 5.0e-65 252.7 366 46.4
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 1.1e-64 251.5 264 54.5
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 3.3e-64 250.0 343 47.8
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 6.8e-62 242.3 399 43.9
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 3.4e-61 240.0 189 66.7
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 9.8e-61 238.4 351 41.9
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 2.4e-59 233.8 298 51.3
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 9.2e-59 231.9 378 43.7
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 8.6e-57 225.3 278 48.9
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 3.3e-56 223.4 352 42.0
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 1.2e-55 221.5 346 42.8
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 2.1e-55 220.7 290 50.3
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 5.2e-54 216.1 367 42.8
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.5e-53 214.5 254 52.0
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 3.4e-53 213.4 374 40.6
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 2.0e-50 204.1 365 40.3
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 6.0e-50 202.6 363 40.2
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 1.3e-49 201.4 333 41.4
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 8.0e-47 192.2 190 53.2
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 7.5e-45 185.7 198 52.0
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 8.3e-44 182.2 190 52.1
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 1.6e-42 177.9 351 35.6
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 1.6e-42 177.9 352 37.8
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 3.0e-41 173.7 352 37.5
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 5.0e-41 172.9 137 56.9
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 5.6e-40 169.5 210 45.7
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 1.4e-38 164.9 351 37.6
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 4.0e-38 163.3 350 36.3
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 5.2e-38 162.9 411 32.8
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 4.4e-37 159.8 242 47.9
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 3.0e-33 147.1 119 68.9
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 3.1e-30 137.1 111 70.3
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 1.7e-28 131.3 183 45.4
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 1.6e-26 124.8 159 48.4
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 7.1e-19 99.4 157 37.6
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.2e-18 98.6 156 37.8
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 1.2e-18 98.6 308 33.8
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 1.6e-18 98.2 170 37.6
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 3.5e-18 97.1 161 32.9
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 2.3e-17 94.4 171 35.7
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 1.1e-16 92.0 160 36.9
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.1e-16 92.0 156 34.0
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 1.9e-16 91.3 349 25.8
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 8.1e-15 85.9 102 43.1
Aqoxy5G03520 Aquilegia oxysepala HOM05D001735 ORTHO05D001640 5.6e-08 63.2 220 26.8
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 1.3e-07 62.0 165 30.3
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 1.3e-07 62.0 165 30.3
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 1.3e-07 62.0 165 30.3
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 1.3e-07 62.0 165 30.3
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 1.3e-07 62.0 165 30.3
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 1.6e-07 61.6 165 29.7
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 3.7e-07 60.5 352 25.6
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 1.4e-06 58.5 350 25.4
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 2.4e-06 57.8 86 45.3
Nn4g22410 Nelumbo nucifera HOM05D001735 ORTHO05D001640 2.4e-06 57.8 153 28.1
CDE09G1341 Ceratophyllum demersum HOM05D001735 ORTHO05D001640 5.3e-06 56.6 156 27.6


User provided reference genes

Program Settings