Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 6.8e-57 223.8 115 100.0
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 1.2e-29 133.3 120 61.7
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 2.8e-26 122.1 108 63.0
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 2.2e-23 112.5 112 55.4
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 6.5e-23 110.9 108 56.5
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 1.1e-22 110.2 109 53.2
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 3.2e-22 108.6 110 55.5
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 3.2e-22 108.6 107 55.1
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 2.7e-21 105.5 145 48.3
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 2.7e-21 105.5 110 56.4
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 3.5e-21 105.1 109 51.4
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 3.5e-21 105.1 109 53.2
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 2.3e-20 102.4 108 55.6
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 2.5e-19 99.0 117 51.3
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 4.3e-19 98.2 118 50.8
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 7.4e-19 97.4 109 53.2
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 7.4e-19 97.4 118 50.0
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 9.7e-19 97.1 112 51.8
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 9.7e-19 97.1 101 54.5
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 2.8e-18 95.5 117 49.6
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 2.8e-18 95.5 145 44.1
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 3.7e-18 95.1 107 50.5
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 4.8e-18 94.7 116 51.7
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 6.3e-18 94.4 108 50.0
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 8.2e-18 94.0 108 49.1
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.1e-17 93.6 109 51.4
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 2.4e-17 92.4 106 49.1
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 6.9e-17 90.9 106 50.0
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 6.9e-17 90.9 106 51.9
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 6.9e-17 90.9 106 51.9
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 9.0e-17 90.5 104 53.8
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 1.2e-16 90.1 110 45.5
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.5e-16 89.7 106 50.0
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 1.5e-16 89.7 122 47.5
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 5.9e-16 87.8 104 49.0
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 5.9e-16 87.8 113 47.8
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 1.0e-15 87.0 104 48.1
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.2e-15 85.9 108 48.1
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 2.9e-15 85.5 114 48.2
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 3.8e-15 85.1 107 46.7
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 3.8e-15 85.1 114 46.5
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.8e-15 85.1 112 48.2
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.8e-15 85.1 114 46.5
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 5.0e-15 84.7 70 61.4
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 8.5e-15 84.0 108 43.5
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 8.5e-15 84.0 121 47.1
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.1e-14 83.6 110 49.1
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.1e-14 83.6 97 49.5
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.4e-14 83.2 112 47.3
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 3.2e-14 82.0 110 48.2
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 4.2e-14 81.6 114 45.6
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 5.5e-14 81.3 110 47.3
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 5.5e-14 81.3 102 45.1
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 7.2e-14 80.9 106 45.3
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 7.2e-14 80.9 105 40.0
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 9.4e-14 80.5 108 47.2
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 9.4e-14 80.5 116 42.2
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 1.2e-13 80.1 109 46.8
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 1.2e-13 80.1 113 43.4
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 1.2e-13 80.1 119 46.2
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 1.6e-13 79.7 105 47.6
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 1.6e-13 79.7 105 47.6
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.6e-13 79.7 108 43.5
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 1.6e-13 79.7 72 58.3
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.7e-13 79.0 112 45.5
Lj3g0011225 Lotus japonicus HOM05D004288 ORTHO05D004997 2.7e-13 79.0 115 43.5
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 2.7e-13 79.0 47 72.3
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 3.6e-13 78.6 114 42.1
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 3.6e-13 78.6 63 63.5
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 3.6e-13 78.6 113 43.4
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 4.6e-13 78.2 131 42.0
Lj1g0008863 Lotus japonicus HOM05D004288 ORTHO05D004997 4.6e-13 78.2 113 45.1
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 6.1e-13 77.8 119 40.3
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 7.9e-13 77.4 116 41.4
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 7.9e-13 77.4 63 61.9
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.0e-12 77.0 63 60.3
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 1.4e-12 76.6 112 46.4
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 1.4e-12 76.6 71 53.5
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 1.8e-12 76.3 69 55.1
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 3.9e-12 75.1 42 81.0
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 3.9e-12 75.1 116 38.8
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 6.7e-12 74.3 118 45.8
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 6.7e-12 74.3 128 39.1
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 8.8e-12 73.9 120 43.3
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 8.8e-12 73.9 115 41.7
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 8.8e-12 73.9 117 43.6
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 1.1e-11 73.6 63 61.9
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 1.1e-11 73.6 63 57.1
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.1e-11 73.6 69 56.5
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 1.5e-11 73.2 127 40.2
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.5e-11 73.2 64 59.4
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 1.5e-11 73.2 46 71.7
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 2.0e-11 72.8 42 76.2
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 2.0e-11 72.8 59 59.3
Ciclev10029597m.g Citrus clementina HOM05D004288 ORTHO05D004997 2.5e-11 72.4 116 43.1
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 2.5e-11 72.4 128 37.5
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 4.3e-11 71.6 111 40.5
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 5.7e-11 71.2 81 46.9
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.3e-10 70.1 75 53.3
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 1.7e-10 69.7 47 68.1
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.2e-10 69.3 62 59.7
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 4.8e-10 68.2 117 41.9
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 4.8e-10 68.2 59 54.2
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 4.8e-10 68.2 105 37.1
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 4.8e-10 68.2 77 46.8
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 4.8e-10 68.2 105 37.1
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 4.8e-10 68.2 87 44.8
Lj6g0004688 Lotus japonicus HOM05D004288 ORTHO05D004997 6.3e-10 67.8 117 41.9
VMungo0647G1883 Vigna mungo HOM05D004288 ORTHO05D004997 6.3e-10 67.8 116 41.4
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 8.2e-10 67.4 105 41.9
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 8.2e-10 67.4 66 54.5
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 8.2e-10 67.4 102 45.1
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 1.1e-09 67.0 48 68.8
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 1.8e-09 66.2 84 48.8
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 1.8e-09 66.2 41 65.9
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 3.1e-09 65.5 52 63.5
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 5.3e-09 64.7 117 39.3
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 5.3e-09 64.7 71 52.1
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 9.1e-09 63.9 39 71.8
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 9.1e-09 63.9 49 59.2
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 9.1e-09 63.9 108 40.7
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 1.2e-08 63.5 112 39.3
ECA246G3669 Erigeron canadensis HOM05D002841 ORTHO05D003158 1.2e-08 63.5 54 59.3
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 2.0e-08 62.8 106 39.6
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 2.0e-08 62.8 59 50.8
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 2.0e-08 62.8 112 33.9
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 2.6e-08 62.4 48 66.7
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 2.6e-08 62.4 122 39.3
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 2.6e-08 62.4 39 71.8
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 3.4e-08 62.0 99 41.4
Aqoxy5G00895 Aquilegia oxysepala HOM05D003189 ORTHO05D003449 4.5e-08 61.6 57 56.1
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 5.9e-08 61.2 53 58.5
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 7.7e-08 60.8 69 49.3
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 1.0e-07 60.5 48 62.5
DCAR_020077 Daucus carota HOM05D004288 ORTHO05D004997 2.2e-07 59.3 48 60.4
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 2.2e-07 59.3 95 38.9
BcaNung02758 Brassica carinata HOM05D004288 ORTHO05D004997 5.0e-07 58.2 40 62.5
BolC9t60183H Brassica oleracea HOM05D004288 ORTHO05D004997 5.0e-07 58.2 40 62.5
AUR62024064 Chenopodium quinoa HOM05D004288 ORTHO05D004997 6.5e-07 57.8 59 50.8
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 6.5e-07 57.8 42 66.7
C09p74500 Brassica napus HOM05D004288 ORTHO05D004997 1.1e-06 57.0 47 59.6
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 1.1e-06 57.0 58 53.4
BcaNung06280 Brassica carinata HOM05D004288 ORTHO05D004997 1.4e-06 56.6 41 61.0
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 1.4e-06 56.6 52 55.8
Nn5g30537 Nelumbo nucifera HOM05D004288 ORTHO05D004997 1.4e-06 56.6 142 35.2
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 1.9e-06 56.2 52 53.8
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 1.9e-06 56.2 52 53.8
BcaB05g21897 Brassica carinata HOM05D004288 ORTHO05D004997 2.5e-06 55.8 52 55.8
AUR62029595 Chenopodium quinoa HOM05D004288 ORTHO05D004997 2.5e-06 55.8 58 50.0
Lalb_Chr11g0062841 Lupinus albus HOM05D004288 ORTHO05D004997 2.5e-06 55.8 110 35.5
SGA_v2.0_scaffold238G43969 Striga asiatica HOM05D004288 ORTHO05D004997 4.2e-06 55.1 115 34.8
BcaNung04465 Brassica carinata HOM05D004288 ORTHO05D004997 5.5e-06 54.7 40 60.0
A10p33580 Brassica napus HOM05D004288 ORTHO05D004997 5.5e-06 54.7 40 60.0
BraA10t45389Z Brassica rapa HOM05D004288 ORTHO05D004997 5.5e-06 54.7 40 60.0
BolC2t06031H Brassica oleracea HOM05D004288 ORTHO05D004997 9.4e-06 53.9 52 51.9
HPP92_013399 Vanilla planifolia HOM05D059585 ORTHO05D004997 9.4e-06 53.9 44 61.4


User provided reference genes

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