Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G044200 Manihot esculenta HOM05D006600 ORTHO05D008446 8.1e-196 686.8 326 100.0
QL12p037547 Quercus lobata HOM05D006600 ORTHO05D008446 5.1e-166 587.8 327 84.1
Sabra14G0012400 Salix brachista HOM05D006600 ORTHO05D008446 5.0e-161 571.2 326 80.7
THA.LOC104807092 Tarenaya hassleriana HOM05D006600 ORTHO05D008446 1.4e-160 569.7 320 83.1
CiPaw.08G048500 Carya illinoinensis HOM05D006600 ORTHO05D008446 9.3e-160 567.0 323 83.0
Medtr3g102800 Medicago truncatula HOM05D006600 ORTHO05D008446 7.9e-159 563.9 322 81.1
TPR.G33718 Trifolium pratense HOM05D006600 ORTHO05D008446 2.3e-158 562.4 320 80.9
Psat5g038240 Pisum sativum HOM05D006600 ORTHO05D008446 3.9e-158 561.6 322 80.7
Glyma.04G044500 Glycine max HOM05D006600 ORTHO05D008446 3.1e-155 552.0 322 79.8
HanXRQChr10g0304021 Helianthus annuus HOM05D006600 ORTHO05D008446 3.8e-153 545.0 323 79.6
PSO675G8764 Papaver somniferum HOM05D006600 ORTHO05D008446 3.8e-153 545.0 328 77.4
Thecc.08G092000 Theobroma cacao HOM05D006600 ORTHO05D008446 3.2e-152 542.0 326 78.8
Ah.15g092540 Amaranthus hybridus HOM05D006600 ORTHO05D008446 9.4e-152 540.4 321 77.9
MBI16_g13383_MAGBIO Magnolia biondii HOM05D006600 ORTHO05D008446 1.2e-151 540.0 323 78.3
Sopen04g031730 Solanum pennellii HOM05D006600 ORTHO05D008446 6.1e-151 537.7 328 75.9
AUR62038783 Chenopodium quinoa HOM05D006600 ORTHO05D008446 6.7e-150 534.3 325 75.7
Solyc04g078120.3 Solanum lycopersicum HOM05D006600 ORTHO05D008446 3.3e-149 531.9 328 75.0
SGA_v2.0_scaffold244G44349 Striga asiatica HOM05D006600 ORTHO05D008446 1.7e-148 529.6 322 77.6
Nitab4.5_0000934g0020 Nicotiana tabacum HOM05D006600 ORTHO05D008446 6.3e-148 527.7 328 75.0
CDE04G0491 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 1.8e-147 526.2 328 74.1
Nitab4.5_0003228g0070 Nicotiana tabacum HOM05D006600 ORTHO05D008446 5.3e-147 524.6 328 75.3
Oeu050861.1 Olea europaea HOM05D006600 ORTHO05D008446 1.2e-146 523.5 322 75.2
Lj4A761T87 Lonicera japonica HOM05D006600 ORTHO05D008446 7.7e-146 520.8 288 83.0
unitig_62.g23648 Utricularia gibba HOM05D006600 ORTHO05D008446 2.9e-145 518.8 321 73.2
BolC3t18247H Brassica oleracea HOM05D006600 ORTHO05D008446 1.4e-144 516.5 323 73.1
AUR62037454 Chenopodium quinoa HOM05D006600 ORTHO05D008446 4.2e-144 515.0 325 74.8
C03p59830 Brassica napus HOM05D006600 ORTHO05D008446 9.4e-144 513.8 323 73.1
BcaB02g09901 Brassica carinata HOM05D006600 ORTHO05D008446 2.1e-143 512.7 323 71.8
BraA06t26199Z Brassica rapa HOM05D006600 ORTHO05D008446 6.1e-143 511.1 323 72.1
CAN.G1054.24 Capsicum annuum HOM05D006600 ORTHO05D008446 7.9e-143 510.8 288 80.9
A06p32700 Brassica napus HOM05D006600 ORTHO05D008446 1.0e-142 510.4 323 72.1
PSO541G2868 Papaver somniferum HOM05D006600 ORTHO05D008446 1.7e-140 503.1 328 72.6
Thhalv10005718m.g Eutrema salsugineum HOM05D006600 ORTHO05D008446 6.3e-140 501.1 323 72.8
Rhsim07G0222000 Rhododendron simsii HOM05D006600 ORTHO05D008446 3.2e-136 488.8 328 71.0
Ca_15912_v3 Cicer arietinum L. HOM05D006600 ORTHO05D008446 4.2e-136 488.4 324 71.9
Cfa013668 Carpinus fangiana HOM05D006600 ORTHO05D008446 9.4e-136 487.3 328 72.0
Atru.chr13.803 Acer truncatum HOM05D006600 ORTHO05D008446 2.7e-135 485.7 326 72.4
COL.COLO4_28538 Corchorus olitorius HOM05D006600 ORTHO05D008446 3.6e-135 485.3 334 71.6
Gorai.009G217900 Gossypium raimondii HOM05D006600 ORTHO05D008446 6.1e-135 484.6 326 72.4
Dinv44978 Davidia involucrata HOM05D006600 ORTHO05D008446 1.8e-134 483.0 328 70.4
arahy.Tifrunner.gnm1.ann1.H62KW4 Arachis hypogaea HOM05D006600 ORTHO05D008446 1.5e-133 479.9 328 70.1
TWI56G0382 Tripterygium wilfordii HOM05D006600 ORTHO05D008446 1.5e-133 479.9 327 71.3
arahy.Tifrunner.gnm1.ann1.UTGV4K Arachis hypogaea HOM05D006600 ORTHO05D008446 2.0e-133 479.6 328 69.8
TAR625G0631 Trochodendron aralioides HOM05D006600 ORTHO05D008446 2.6e-133 479.2 328 70.4
PGSC0003DMG400021533 Solanum tuberosum HOM05D006600 ORTHO05D008446 1.3e-132 476.9 328 68.9
Prupe.1G425800 Prunus persica HOM05D006600 ORTHO05D008446 1.7e-132 476.5 328 70.1
Ciclev10001599m.g Citrus clementina HOM05D006600 ORTHO05D008446 2.2e-132 476.1 326 70.6
Eucgr.F00122 Eucalyptus grandis HOM05D006600 ORTHO05D008446 2.2e-132 476.1 327 69.4
Gohir.A05G207900 Gossypium hirsutum HOM05D006600 ORTHO05D008446 2.2e-132 476.1 326 70.9
AT5G65860 Arabidopsis thaliana HOM05D006600 ORTHO05D008446 2.8e-132 475.7 323 68.4
Zm00001eb214310 Zea mays HOM05D006600 ORTHO05D008446 2.8e-132 475.7 324 66.7
FAN20G2273 Fragaria x ananassa HOM05D006600 ORTHO05D008446 3.7e-132 475.3 322 68.6
GSVIVG01009372001 Vitis vinifera HOM05D006600 ORTHO05D008446 3.7e-132 475.3 252 87.7
Gohir.D05G211400 Gossypium hirsutum HOM05D006600 ORTHO05D008446 4.8e-132 474.9 326 70.9
MSTRG.1040 Avicennia marina HOM05D006600 ORTHO05D008446 1.4e-131 473.4 327 68.5
Actinidia38095 Actinidia chinensis HOM05D006600 ORTHO05D008446 5.3e-131 471.5 327 69.1
CsaV3_2G026260 Cucumis sativus L. HOM05D006600 ORTHO05D008446 5.3e-131 471.5 328 68.6
BcaC01g02830 Brassica carinata HOM05D006600 ORTHO05D008446 9.1e-131 470.7 283 74.9
Lalb_Chr23g0267431 Lupinus albus HOM05D006600 ORTHO05D008446 9.1e-131 470.7 328 68.0
CSS0036700 Camellia sinensis var. sinensis HOM05D006600 ORTHO05D008446 1.2e-130 470.3 328 68.3
PGR083G0558 Punica granatum HOM05D006600 ORTHO05D008446 2.0e-130 469.5 328 68.9
Haze_22302 Corylus avellana HOM05D006600 ORTHO05D008446 3.5e-130 468.8 328 70.7
Lj1g0008642 Lotus japonicus HOM05D006600 ORTHO05D008446 3.5e-130 468.8 326 67.5
Os03g0761200 Oryza sativa ssp. japonica HOM05D006600 ORTHO05D008446 3.5e-130 468.8 324 66.4
HPP92_018760 Vanilla planifolia HOM05D006600 ORTHO05D008446 4.5e-130 468.4 320 67.8
ClCG08G016350 Citrullus lanatus HOM05D006600 ORTHO05D008446 7.7e-130 467.6 328 68.0
Lsat_1_v5_gn_6_112481 Lactuca sativa HOM05D006600 ORTHO05D008446 1.3e-129 466.8 327 68.5
VMungo1309G2568 Vigna mungo HOM05D006600 ORTHO05D008446 1.3e-129 466.8 322 69.3
Phvul.009G070400 Phaseolus vulgaris HOM05D006600 ORTHO05D008446 2.2e-129 466.1 324 69.8
Glyma.06G045000 Glycine max HOM05D006600 ORTHO05D008446 3.8e-129 465.3 322 68.9
MD08G1088100 Malus domestica HOM05D006600 ORTHO05D008446 6.5e-129 464.5 328 68.3
Sed0004073 Sechium edule HOM05D006600 ORTHO05D008446 1.5e-128 463.4 328 68.6
vmacro04585 Vaccinium macrocarpon HOM05D006600 ORTHO05D008446 1.9e-128 463.0 328 68.0
Cc10_g05550 Coffea canephora HOM05D006600 ORTHO05D008446 2.5e-128 462.6 328 67.1
MELO3C010818.2 Cucumis melo HOM05D006600 ORTHO05D008446 1.2e-127 460.3 328 67.4
SalBow7G4697 Salvia bowleyana HOM05D006600 ORTHO05D008446 4.7e-127 458.4 327 66.7
DCAR_020080 Daucus carota HOM05D006600 ORTHO05D008446 1.0e-126 457.2 328 66.5
Peaxi162Scf00081g00125 Petunia axillaris HOM05D006600 ORTHO05D008446 1.4e-126 456.8 328 66.2
CANSAT35G1599 Cannabis sativa HOM05D006600 ORTHO05D008446 2.3e-126 456.1 326 66.9
Hma1.2p1_0923F.1_g236990 Hydrangea macrophylla HOM05D006600 ORTHO05D008446 3.0e-126 455.7 327 67.6
Migut.C00501 Erythranthe guttata HOM05D006600 ORTHO05D008446 4.0e-126 455.3 329 66.3
Aqoxy6G02751 Aquilegia oxysepala HOM05D006600 ORTHO05D008446 1.3e-124 450.3 324 66.7
EL10As7g23812 Beta vulgaris HOM05D006600 ORTHO05D008446 2.8e-124 449.1 369 59.9
Duzib093G2027 Durio zibethinus HOM05D006600 ORTHO05D008446 1.1e-123 447.2 260 81.5
Carub.0008s2674 Capsella rubella HOM05D006600 ORTHO05D008446 2.7e-122 442.6 322 64.3
Cpa.g.sc21.115 Carica papaya HOM05D006600 ORTHO05D008446 4.5e-122 441.8 237 86.5
RcHm_v2.0_Chr6g0309231 Rosa chinensis HOM05D006600 ORTHO05D008446 4.5e-122 441.8 322 65.2
SMO228G0045 Selaginella moellendorffii HOM05D006600 ORTHO05D008446 5.9e-122 441.4 323 62.5
FvH4_2g33350 Fragaria vesca HOM05D006600 ORTHO05D008446 8.6e-121 437.6 322 64.0
FAN15G1504 Fragaria x ananassa HOM05D006600 ORTHO05D008446 8.6e-121 437.6 322 64.3
FAN24G1058 Fragaria x ananassa HOM05D006600 ORTHO05D008446 1.5e-120 436.8 322 64.0
Sp2g28940 Schrenkiella parvula HOM05D006600 ORTHO05D008446 2.1e-119 433.0 323 63.8
CARHR279850 Cardamine hirsuta HOM05D006600 ORTHO05D008446 1.2e-117 427.2 329 61.7
ATR0030G048 Amborella trichopoda HOM05D006600 ORTHO05D008446 2.8e-116 422.5 332 62.0
FAN27G3009 Fragaria x ananassa HOM05D006600 ORTHO05D008446 3.7e-116 422.2 322 61.8
COL.COLO4_28541 Corchorus olitorius HOM05D006600 ORTHO05D008446 2.9e-113 412.5 246 80.5
SEGI_28402 Sequoiadendron giganteum HOM05D006600 ORTHO05D008446 6.6e-113 411.4 315 62.2
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 2.2e-108 396.4 311 61.7
Nn1g04625 Nelumbo nucifera HOM05D006600 ORTHO05D008446 6.8e-102 374.8 328 57.0
Potri.014G019000 Populus trichocarpa HOM05D006600 ORTHO05D008446 2.3e-97 359.8 263 66.5
ECA246G2737 Erigeron canadensis HOM05D006600 ORTHO05D008446 7.3e-96 354.8 263 66.2
AagrBONN_evm.TU.Sc2ySwM_228.1907 Anthoceros agrestis HOM05D006600 ORTHO05D008446 2.0e-93 346.7 237 66.2
Hma1.2p1_0923F.1_g236980 Hydrangea macrophylla HOM05D006600 ORTHO05D008446 3.4e-93 345.9 280 62.9
Mapoly0063s0069 Marchantia polymorpha HOM05D006600 ORTHO05D008446 2.2e-92 343.2 320 52.2
BcaC01g02829 Brassica carinata HOM05D006600 ORTHO05D008446 1.6e-90 337.0 228 69.3
Cre01.g050050 Chlamydomonas reinhardtii HOM05D006600 ORTHO05D008446 3.0e-89 332.8 376 44.7
Sc26g0004110 Simmondsia chinensis HOM05D006600 ORTHO05D008446 6.2e-79 298.5 251 59.0
AL8G43570 Arabidopsis lyrata HOM05D006600 ORTHO05D008446 1.7e-76 290.4 247 57.5
MCO09G534 Micromonas commoda HOM05D006600 ORTHO05D008446 1.4e-67 260.8 326 39.3
Pp3c17_19880 Physcomitrium patens HOM05D006600 ORTHO05D008446 1.0e-65 254.6 247 49.4
MD15G1072900 Malus domestica HOM05D006600 ORTHO05D008446 2.8e-63 246.5 190 64.2
TAR624G0301 Trochodendron aralioides HOM05D006600 ORTHO05D008446 5.8e-61 238.8 138 81.9
CBR_g40512 Chara braunii HOM05D000409 ORTHO05D000184 3.0e-57 226.5 192 55.2
TAR374G0485 Trochodendron aralioides HOM05D000474 ORTHO05D003648 1.2e-53 214.5 126 80.2
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 3.8e-52 209.5 124 75.0
Actinidia08258 Actinidia chinensis HOM05D006600 ORTHO05D008446 9.4e-43 178.3 94 84.0
GSVIVG01038121001 Vitis vinifera HOM05D006600 ORTHO05D008446 2.6e-24 117.1 101 55.4
CBR_g40511 Chara braunii HOM05D000019 ORTHO05D000002 9.7e-24 115.2 150 44.7
Oeu040380.1 Olea europaea HOM05D006600 ORTHO05D008446 7.2e-19 99.0 87 60.9
MBI16_g35586_MAGBIO Magnolia biondii HOM05D006600 ORTHO05D001493 4.4e-16 89.7 59 69.5
Actinidia08259 Actinidia chinensis HOM05D006600 ORTHO05D008446 4.5e-13 79.7 53 67.9
Dinv39240 Davidia involucrata HOM05D006600 ORTHO05D008446 4.0e-09 66.6 95 43.2
Prupe.6G259700 Prunus persica HOM05D037056 ORTHO05D335045 4.1e-06 56.6 43 62.8
Prupe.1G327800 Prunus persica HOM05D037056 ORTHO05D335556 9.1e-06 55.5 43 62.8
Prupe.8G103600 Prunus persica HOM05D037056 ORTHO05D336041 9.1e-06 55.5 43 62.8


User provided reference genes

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